Rmu_co8439143.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8439143.1
OG0000914
Physical Location & Seq
Reverse (-)
2 .. 1020
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8439143.1_g000001.1.cds

Sequence Viewer

Length: 501 bp
ctggcatgtaggaaaaagtttccaatcacaagagcaagattgaagagacagaagcagaaagaggtggaacaagatagggaagaagaggaaaatgaagaaaaggaggaagaagatgaagaagaacaagataggggagaagaggataatcaagaagaggaggaggaagaagaagagaacgatggagcaaggaacaaaggcaaaggccagaaacaatcatattgccaatacaagtgcaatatgattgcctttcacgacgtgcttcataaagtgtataagcagctcaatcgtgaagaaaagatgggattgaaagccaagttgaagaagacgccattttggaacttgattgaagcttatgataagggattgacgactaagaacacagctgcaaaatcagatcaagagatgcataggacccgccccggatttcaccctgaaatccgtggtggccctgcggggcccaccttagaagaaattctaccaaaaatttggcggaacttcccc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

19.8

Weight (kDa)

5.48

Isoelectric Point (pI)

81.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 415, 452, 490
AcsI RAATTY 2 cut(s) 471, 483
AcyI GRCGYC 1 cut(s) 326
AdeI CACNNNGTG 1 cut(s) 256
AgsI TTSAA 4 cut(s) 43, 307, 319, 347
AjiI CACGTC 1 cut(s) 256
AluBI AGCT 3 cut(s) 280, 350, 383
AluI AGCT 3 cut(s) 280, 350, 383
Alw26I GTCTC 1 cut(s) 40
AoxI GGCC 3 cut(s) 202, 445, 455
ApaI GGGCCC 1 cut(s) 459
ApeKI GCWGC 2 cut(s) 277, 383
ApoI RAATTY 2 cut(s) 471, 483
Asp700I GAANNNNTTC 1 cut(s) 471
AspS9I GGNCC 4 cut(s) 411, 446, 455, 456
AsuC2I CCSGG 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 419
AvaII GGWCC 1 cut(s) 411
BaeGI GKGCMC 1 cut(s) 459
BanII GRGCYC 1 cut(s) 459
BarI GAAGNNNNNNTAC 2 cut(s) 459, 491
BbsI GAAGAC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 289, 370
BccI CCATC 2 cut(s) 173, 292
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BcnI CCSGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 40
BisI GCNGC 2 cut(s) 278, 384
BlsI GCNGC 2 cut(s) 279, 385
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 1 cut(s) 411
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 4 cut(s) 411, 446, 455, 456
BmiI GGNNCC 3 cut(s) 413, 456, 457
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 329
BpuMI CCSGG 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 418, 439
BseDI CCNNGG 2 cut(s) 418, 439
BseRI GAGGAG 2 cut(s) 170, 173
BseSI GKGCMC 1 cut(s) 459
BseXI GCAGC 2 cut(s) 289, 370
BshFI GGCC 3 cut(s) 204, 447, 457
BsiSI CCGG 1 cut(s) 420
BsmAI GTCTC 1 cut(s) 40
BsnI GGCC 3 cut(s) 204, 447, 457
Bsp120I GGGCCC 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 1 cut(s) 394
BspACI CCGC 3 cut(s) 415, 452, 490
BspANI GGCC 3 cut(s) 204, 447, 457
BspLI GGNNCC 3 cut(s) 413, 456, 457
BssECI CCNNGG 2 cut(s) 418, 439
BssMI GATC 1 cut(s) 394
BssNI GRCGYC 1 cut(s) 326
Bst6I CTCTTC 5 cut(s) 38, 78, 132, 147, 165
BstACI GRCGYC 1 cut(s) 326
BstDEI CTNAG 2 cut(s) 372, 463
BstDSI CCRYGG 1 cut(s) 439
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 394
BstNSI RCATGY 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 459
BstV1I GCAGC 2 cut(s) 289, 370
BstV2I GAAGAC 1 cut(s) 329
BstXI CCANNNNNNTGG 1 cut(s) 486
BsuRI GGCC 3 cut(s) 204, 447, 457
BtgI CCRYGG 1 cut(s) 439
BtrI CACGTC 1 cut(s) 256
Cfr13I GGNCC 4 cut(s) 411, 446, 455, 456
CseI GACGC 1 cut(s) 334
CviAII CATG 1 cut(s) 6
CviJI RGCY 7 cut(s) 204, 280, 311, 350, 383, 447, 457
CviKI_1 RGCY 7 cut(s) 204, 280, 311, 350, 383, 447, 457
DdeI CTNAG 2 cut(s) 372, 463
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
DraIII CACNNNGTG 1 cut(s) 256
Eam1104I CTCTTC 5 cut(s) 38, 78, 132, 147, 165
EarI CTCTTC 5 cut(s) 38, 78, 132, 147, 165
Eco24I GRGCYC 1 cut(s) 459
Eco47I GGWCC 1 cut(s) 411
EcoO109I RGGNCCY 2 cut(s) 411, 455
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 459
FaeI CATG 1 cut(s) 9
FaiI YATR 7 cut(s) 7, 217, 239, 264, 273, 354, 408
FatI CATG 1 cut(s) 5
FauI CCCGC 2 cut(s) 422, 445
Fnu4HI GCNGC 2 cut(s) 278, 384
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 2 cut(s) 278, 384
GluI GCNGC 2 cut(s) 278, 384
HaeIII GGCC 3 cut(s) 204, 447, 457
HapII CCGG 1 cut(s) 420
HgaI GACGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 326
Hin1II CATG 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 348
HpaII CCGG 1 cut(s) 420
HphI GGTGA 1 cut(s) 419
Hpy188I TCNGA 1 cut(s) 394
Hpy188III TCNNGA 4 cut(s) 149, 251, 287, 398
Hpy99I CGWCG 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 234, 386, 406
HpyF3I CTNAG 2 cut(s) 372, 463
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 326
Hsp92II CATG 1 cut(s) 9
Kzo9I GATC 1 cut(s) 394
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 4 cut(s) 218, 433, 444, 462
Lsp1109I GCAGC 2 cut(s) 289, 370
LweI GCATC 1 cut(s) 393
MaeII ACGT 1 cut(s) 255
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 2 cut(s) 471, 483
MnlI CCTC 7 cut(s) 55, 79, 97, 133, 148, 151, 154
Mph1103I ATGCAT 1 cut(s) 408
MroXI GAANNNNTTC 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 420
NciI CCSGG 1 cut(s) 420
NdeII GATC 1 cut(s) 394
NlaIII CATG 1 cut(s) 9
NlaIV GGNNCC 3 cut(s) 413, 456, 457
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 1 cut(s) 9
PdmI GAANNNNTTC 1 cut(s) 471
PkrI GCNGC 2 cut(s) 279, 385
PpuMI RGGWCCY 1 cut(s) 411
Psp5II RGGWCCY 1 cut(s) 411
PspN4I GGNNCC 3 cut(s) 413, 456, 457
PspOMI GGGCCC 1 cut(s) 455
PspPI GGNCC 4 cut(s) 411, 446, 455, 456
PspPPI RGGWCCY 1 cut(s) 411
PvuII CAGCTG 1 cut(s) 383
SatI GCNGC 2 cut(s) 278, 384
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 4 cut(s) 411, 446, 455, 456
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 1 cut(s) 459
SetI ASST 6 cut(s) 66, 258, 282, 352, 385, 464
SfaNI GCATC 1 cut(s) 393
SinI GGWCC 1 cut(s) 411
Sse9I AATT 2 cut(s) 471, 483
SsiI CCGC 3 cut(s) 415, 452, 490
StyD4I CCNGG 1 cut(s) 418
TaiI ACGT 1 cut(s) 258
TasI AATT 2 cut(s) 471, 483
TseI GCWGC 2 cut(s) 277, 383
TspDTI ATGAA 3 cut(s) 108, 129, 251
TspGWI ACGGA 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 411
XapI RAATTY 2 cut(s) 471, 483
XceI RCATGY 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 471
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.