Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Reverse (-)

1860154 .. 1861545

Gene Structure 1392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03093.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAAGTTCAGAAAGAGAAAGTAGGTGTTGCGGTGAGAAGAAACAAGATCGAAAAGAAAGCCAAAGTCACTGCAAAGAAATCAAACAAAAACAAAAAGAAGGATGCTGCTGAAGAAGTTCAAGAGGATGTTGACGACCATTTTATGGAGATAGCTACTGAACAAGTTCAAGAGGGTTCTACTGAACAAGTTCAAGAGGATGCTGCTGAAGAAGTTCAAGAGGATGTTACCGACCAATTTATGGAGAAAGCTACTGAACAAGTTCAAGAGGGTGTTATTGTACTATTTCAAAAGGGTGCTACTGAACAAGTTCAAGAGGAAACTAAATACTTGACATTAGAAGATTGGATGAGTTTGAAGATGCAATCTATGAAAGAAAATGCCGCAGAGACAGAAAGAATCATGAGGAAGTTTTTCTATCAGGATAGGGATGGAGAAACTGAGACACCTGCATCTCCTGCAAGAGGAATTGATTACATAGAACGGCTTTGTGAAGAAAAAGAAGAAGTGACCAAAAAATACAAGAAGTTGAAGGCAAAGCTGAAGAAGAAGGAAGAACATATTAAAAAGTTAAAGATAAAGTGCAGACAACTTTGGCTACTGCAAAAGGGTTTAGAGGGTGCTGGGAGTGAGAAAGACATTGAGGGTGAAAAAGGTGGAGCTAGGAGTGAAAAAATTGTTGCTCTAGAAGCTGAAGAGAGTGTGGCTAAGGTTGCTACTGAGAAGGAATTTTGTCGTTCCAAATGTGGTTCTTGCTCAGAATGTGCAACTGCACAAGAAGCTGAGAAGGGTGAAACTGCAAAAGATGACAAAGTAGCTGAAACTGCCACAGCAAAGGCCATAGAAAAGGGCAAAGTTGAAAATGAAGCTCAACCTGCTACTTCCCCAAGGACGCGTTCAATAGTCAAGAGGATCAAAGAAAGAAAGGACCAAAAAGAGAAGAAACTGGAAGATTACGAGGTGCAGAGACTCGAAAAAAAACCAAGGAATGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

333

Amino Acids

37.87

Weight (kDa)

6.12

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	457
Acc36I	ACCTGC	2 cut(s)	457, 883
AccB7I	CCANNNNNTGG	3 cut(s)	145, 241, 989
AccII	CGCG	1 cut(s)	895
AciI	CCGC	2 cut(s)	32, 384
AclWI	GGATC	1 cut(s)	920
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	4 cut(s)	132, 228, 563, 714
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	4 cut(s)	145, 241, 464, 989
AflIII	ACRYGT	1 cut(s)	893
AjuI	GAANNNNNNNTTGG	2 cut(s)	880, 912
AluBI	AGCT	8 cut(s)	155, 251, 541, 662, 692, 782, 818, 869
AluI	AGCT	8 cut(s)	155, 251, 541, 662, 692, 782, 818, 869
Alw26I	GTCTC	3 cut(s)	383, 437, 961
AlwI	GGATC	1 cut(s)	920
AoxI	GGCC	1 cut(s)	837
ApeKI	GCWGC	2 cut(s)	107, 203
ApoI	RAATTY	1 cut(s)	728
Asp700I	GAANNNNTTC	7 cut(s)	117, 165, 189, 213, 261, 309, 413
AspS9I	GGNCC	1 cut(s)	928
AsuHPI	GGTGA	3 cut(s)	46, 659, 803
AvaII	GGWCC	1 cut(s)	928
BbvI	GCAGC	2 cut(s)	94, 190
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	1 cut(s)	500
BcoDI	GTCTC	3 cut(s)	383, 437, 961
BfaI	CTAG	2 cut(s)	663, 686
BfuAI	ACCTGC	2 cut(s)	457, 883
BisI	GCNGC	3 cut(s)	108, 204, 384
BlsI	GCNGC	3 cut(s)	109, 205, 385
Bme18I	GGWCC	1 cut(s)	928
BmgT120I	GGNCC	1 cut(s)	928
BmsI	GCATC	4 cut(s)	94, 190, 351, 461
Bpu10I	CCTNAGC	1 cut(s)	708
BsaJI	CCNNGG	2 cut(s)	887, 983
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 241, 464, 989
Bse1I	ACTGG	1 cut(s)	951
BseDI	CCNNGG	2 cut(s)	887, 983
BseGI	GGATG	6 cut(s)	109, 133, 205, 229, 354, 436
BseLI	CCNNNNNNNGG	4 cut(s)	145, 241, 464, 989
BseMII	CTCAG	4 cut(s)	432, 711, 771, 774
BseNI	ACTGG	1 cut(s)	951
BseXI	GCAGC	2 cut(s)	94, 190
BseYI	CCCAGC	1 cut(s)	623
BsgI	GTGCAG	3 cut(s)	604, 756, 983
Bsh1236I	CGCG	1 cut(s)	895
BshFI	GGCC	1 cut(s)	839
BslI	CCNNNNNNNGG	4 cut(s)	145, 241, 464, 989
BsmAI	GTCTC	3 cut(s)	383, 437, 961
BsnI	GGCC	1 cut(s)	839
Bsp143I	GATC	2 cut(s)	48, 912
BspACI	CCGC	2 cut(s)	32, 384
BspANI	GGCC	1 cut(s)	839
BspCNI	CTCAG	4 cut(s)	433, 712, 770, 775
BspFNI	CGCG	1 cut(s)	895
BspHI	TCATGA	1 cut(s)	402
BspMI	ACCTGC	2 cut(s)	457, 883
BspPI	GGATC	1 cut(s)	920
BsrI	ACTGG	1 cut(s)	951
BssECI	CCNNGG	2 cut(s)	887, 983
BssMI	GATC	2 cut(s)	48, 912
BssT1I	CCWWGG	2 cut(s)	887, 983
Bst6I	CTCTTC	1 cut(s)	690
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstDEI	CTNAG	5 cut(s)	441, 708, 720, 757, 783
BstENI	CCTNNNNNAGG	1 cut(s)	462
BstF5I	GGATG	6 cut(s)	109, 133, 205, 229, 354, 436
BstFNI	CGCG	1 cut(s)	895
BstKTI	GATC	2 cut(s)	51, 915
BstMAI	GTCTC	3 cut(s)	383, 437, 961
BstMBI	GATC	2 cut(s)	48, 912
BstMWI	GCNNNNNNNGC	6 cut(s)	458, 689, 713, 779, 824, 875
BstUI	CGCG	1 cut(s)	895
BstV1I	GCAGC	2 cut(s)	94, 190
BsuRI	GGCC	1 cut(s)	839
BtsCI	GGATG	6 cut(s)	109, 133, 205, 229, 354, 436
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
BveI	ACCTGC	2 cut(s)	457, 883
CciI	TCATGA	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	928
CseI	GACGC	1 cut(s)	901
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	1 cut(s)	403
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	5 cut(s)	441, 708, 720, 757, 783
DpnI	GATC	2 cut(s)	50, 914
DpnII	GATC	2 cut(s)	48, 912
Eam1104I	CTCTTC	1 cut(s)	690
EarI	CTCTTC	1 cut(s)	690
Eco130I	CCWWGG	2 cut(s)	887, 983
Eco47I	GGWCC	1 cut(s)	928
Eco57I	CTGAAG	4 cut(s)	132, 228, 563, 714
EcoNI	CCTNNNNNAGG	1 cut(s)	462
EcoT14I	CCWWGG	2 cut(s)	887, 983
ErhI	CCWWGG	2 cut(s)	887, 983
FaeI	CATG	1 cut(s)	406
FaiI	YATR	7 cut(s)	146, 242, 371, 404, 479, 561, 842
FatI	CATG	1 cut(s)	402
Fnu4HI	GCNGC	3 cut(s)	108, 204, 384
FokI	GGATG	6 cut(s)	116, 140, 212, 236, 361, 443
Fsp4HI	GCNGC	3 cut(s)	108, 204, 384
FspBI	CTAG	2 cut(s)	663, 686
GluI	GCNGC	3 cut(s)	108, 204, 384
GsaI	CCCAGC	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	839
HgaI	GACGC	1 cut(s)	901
Hin1II	CATG	1 cut(s)	406
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	399, 969
HphI	GGTGA	3 cut(s)	46, 659, 803
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	12, 760
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	5 cut(s)	94, 526, 544, 718, 781
HpyF10VI	GCNNNNNNNGC	6 cut(s)	458, 689, 713, 779, 824, 875
HpyF3I	CTNAG	5 cut(s)	441, 708, 720, 757, 783
Hsp92II	CATG	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	48, 912
LmnI	GCTCC	1 cut(s)	659
LpnPI	CCDG	6 cut(s)	407, 462, 471, 609, 888, 932
Lsp1109I	GCAGC	2 cut(s)	94, 190
LweI	GCATC	4 cut(s)	94, 190, 351, 461
MaeI	CTAG	2 cut(s)	663, 686
MaeIII	GTNAC	3 cut(s)	67, 226, 508
MalI	GATC	2 cut(s)	50, 914
MboI	GATC	2 cut(s)	48, 912
MluCI	AATT	4 cut(s)	236, 468, 675, 728
MluI	ACGCGT	1 cut(s)	893
MlyI	GAGTC	1 cut(s)	963
MroXI	GAANNNNTTC	7 cut(s)	117, 165, 189, 213, 261, 309, 413
MseI	TTAA	2 cut(s)	564, 572
MvnI	CGCG	1 cut(s)	895
MwoI	GCNNNNNNNGC	6 cut(s)	458, 689, 713, 779, 824, 875
NdeII	GATC	2 cut(s)	48, 912
NlaIII	CATG	1 cut(s)	406
NmuCI	GTSAC	2 cut(s)	67, 508
PagI	TCATGA	1 cut(s)	402
PaqCI	CACCTGC	1 cut(s)	457
PdmI	GAANNNNTTC	7 cut(s)	117, 165, 189, 213, 261, 309, 413
PfeI	GAWTC	1 cut(s)	399
PflMI	CCANNNNNTGG	3 cut(s)	145, 241, 989
PkrI	GCNGC	3 cut(s)	109, 205, 385
PleI	GAGTC	1 cut(s)	963
PpsI	GAGTC	1 cut(s)	963
PspFI	CCCAGC	1 cut(s)	623
PspPI	GGNCC	1 cut(s)	928
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	564, 572
SatI	GCNGC	3 cut(s)	108, 204, 384
Sau3AI	GATC	2 cut(s)	48, 912
Sau96I	GGNCC	1 cut(s)	928
SchI	GAGTC	1 cut(s)	963
SfaNI	GCATC	4 cut(s)	94, 190, 351, 461
SinI	GGWCC	1 cut(s)	928
Sse9I	AATT	4 cut(s)	236, 468, 675, 728
SsiI	CCGC	2 cut(s)	32, 384
SspMI	CTAG	2 cut(s)	663, 686
StyI	CCWWGG	2 cut(s)	887, 983
TaqI	TCGA	2 cut(s)	51, 972
TasI	AATT	4 cut(s)	236, 468, 675, 728
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	2 cut(s)	564, 572
Tru9I	TTAA	2 cut(s)	564, 572
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	67, 508
TseI	GCWGC	2 cut(s)	107, 203
Tsp45I	GTSAC	2 cut(s)	67, 508
TspDTI	ATGAA	2 cut(s)	386, 879
TspRI	CASTG	1 cut(s)	76
Van91I	CCANNNNNTGG	3 cut(s)	145, 241, 989
VpaK11BI	GGWCC	1 cut(s)	928
XagI	CCTNNNNNAGG	1 cut(s)	462
XapI	RAATTY	1 cut(s)	728
XbaI	TCTAGA	1 cut(s)	685
XmnI	GAANNNNTTC	7 cut(s)	117, 165, 189, 213, 261, 309, 413
XspI	CTAG	2 cut(s)	663, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.