FvH4_6g03891

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
2095065 .. 2095658
594 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03891.t1

Sequence Viewer

Length: 426 bp
ATGACACCGTGCTGCGTCAAGTGGTCTCTCCCTTTGTTTATGAAAAAGATGGAGAAACTGCAAGTGCATGAAATCGATCTTGATATTGCAGAGGAGTTCGAGCCAAAGTCAAAGGATAAAGAAGAGAGTGATGATGATTTTACAGACTATCCACACAAGTATGCTTCTCCAAAGCAAAAAGGGCAGAAAAGACGTCGAGAAGAAGAAACAAATCAGAAAGGAGCATCATCGAGTCATGCTACTGCTGTGGCTGGAAAGCAGCACGATAATGGGAAAGAAACCAAGAAGCAGACGACTAAGGTGGGAAAGAAGAAAGAAGAGAGGAAGAACTTGAAGGGTGCTACTACACAAGCTGAGAAGGAAGATTGGACGACCAGACAGTGTAGTAGCCGGAAGATTGGACGACCACACAATGTAGTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.19

Weight (kDa)

9.27

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 196
AcyI GRCGYC 1 cut(s) 193
AgsI TTSAA 1 cut(s) 334
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 12, 259
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 30
BisI GCNGC 2 cut(s) 13, 260
BlsI GCNGC 2 cut(s) 14, 261
BmsI GCATC 1 cut(s) 233
Bsa29I ATCGAT 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 30
BseCI ATCGAT 1 cut(s) 75
BseMII CTCAG 1 cut(s) 345
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 271
BshVI ATCGAT 1 cut(s) 75
BsiSI CCGG 1 cut(s) 391
BsmAI GTCTC 1 cut(s) 30
Bso31I GGTCTC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 346
BspDI ATCGAT 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 30
BssMI GATC 1 cut(s) 76
BssNI GRCGYC 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 9, 381
Bst6I CTCTTC 2 cut(s) 117, 312
BstACI GRCGYC 1 cut(s) 193
BstDEI CTNAG 2 cut(s) 297, 354
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 271
Bsu15I ATCGAT 1 cut(s) 75
BsuTUI ATCGAT 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 386
ClaI ATCGAT 1 cut(s) 75
CseI GACGC 1 cut(s) 4
CviAII CATG 3 cut(s) 68, 236, 423
CviJI RGCY 4 cut(s) 103, 251, 353, 390
CviKI_1 RGCY 4 cut(s) 103, 251, 353, 390
DdeI CTNAG 2 cut(s) 297, 354
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 117, 312
EarI CTCTTC 2 cut(s) 117, 312
Eco31I GGTCTC 1 cut(s) 30
FaeI CATG 3 cut(s) 71, 239, 426
FaiI YATR 5 cut(s) 41, 69, 162, 237, 424
FatI CATG 3 cut(s) 67, 235, 422
Fnu4HI GCNGC 2 cut(s) 13, 260
Fsp4HI GCNGC 2 cut(s) 13, 260
GluI GCNGC 2 cut(s) 13, 260
HapII CCGG 1 cut(s) 391
HgaI GACGC 1 cut(s) 4
Hin1I GRCGYC 1 cut(s) 193
Hin1II CATG 3 cut(s) 71, 239, 426
HinfI GANTC 1 cut(s) 232
HpaII CCGG 1 cut(s) 391
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 2 cut(s) 80, 197
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 2 cut(s) 328, 352
HpyCH4III ACNGT 2 cut(s) 9, 381
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 61, 67, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 2 cut(s) 297, 354
HpySE526I ACGT 1 cut(s) 193
Hsp92I GRCGYC 1 cut(s) 193
Hsp92II CATG 3 cut(s) 71, 239, 426
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 3 cut(s) 237, 388, 404
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 1 cut(s) 233
MaeII ACGT 1 cut(s) 193
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 8 cut(s) 134, 212, 215, 322, 329, 337, 374, 406
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 2 cut(s) 85, 315
MslI CAYNNNNRTG 2 cut(s) 159, 267
MspI CCGG 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 1 cut(s) 76
NlaIII CATG 3 cut(s) 71, 239, 426
PkrI GCNGC 2 cut(s) 14, 261
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
RseI CAYNNNNRTG 2 cut(s) 159, 267
SatI GCNGC 2 cut(s) 13, 260
Sau3AI GATC 1 cut(s) 76
SchI GAGTC 1 cut(s) 241
SetI ASST 3 cut(s) 196, 303, 355
SfaNI GCATC 1 cut(s) 233
SmiMI CAYNNNNRTG 2 cut(s) 159, 267
TaaI ACNGT 2 cut(s) 9, 381
TaiI ACGT 1 cut(s) 196
TaqI TCGA 4 cut(s) 75, 99, 196, 230
TscAI CASTG 1 cut(s) 386
TseI GCWGC 2 cut(s) 12, 259
TspDTI ATGAA 2 cut(s) 56, 84
TspRI CASTG 1 cut(s) 386
ZraI GACGTC 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.