Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

51953849 .. 51956697

Gene Structure 2849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG292700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTGACTATAGTGGTGGCTTGAGTGCTAACAAGGCTGCTGGGCAAGAAGAAGAGAACAATATGGCGTCGTTTCCTGAAAAGATTGATAATGCAGTTACCGACAACAATAGAAGCAAACATGGCGAGGAAAACAGTGACGATGACTTTGAGAACCCTCCATCAAAGCATGCTGCTACTGCACAGGCAAAAGGGCAGAAAAGACAAGGAGAAGAAAAGAAGGCCACGGTAGCTACCAAAAAACCAGCCAAAAAGCGGGTGGCAGAAAAGAGAGCAAAAAGTAAAGAAAATAAGATCTCGAATGAGGATGCTACTGCACCAGCTAAAAAGGAAAAGTGTAGAAATGAAGAAGAGACAGCTGATGATGAATCAGAAGGTTTCGAAGATGAACATGAAGACATGACATTAAGAGATTGGGTGGATATGAACAGCATGAATTTTGCGAAAAAGATGGATGAGAATAGAGGAGAGGAAGGGATGCAAAAAAAAGCCACAAGTAGAGTAAATGTCAATGATATGGATTTGGATGCAACTGAGGAAGAAGAGGTAAATAAATTTAAGTTTTTCCGGTTTATGCAGATTTCTTTTGGTCTACTTCACTTTGGATCTTTACCTTGTTTTGATATAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.67

Weight (kDa)

4.98

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	592
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	1 cut(s)	613
AcsI	RAATTY	2 cut(s)	436, 554
AcyI	GRCGYC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	255
AluBI	AGCT	3 cut(s)	233, 323, 359
AluI	AGCT	3 cut(s)	233, 323, 359
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	613
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	38, 173
ApoI	RAATTY	2 cut(s)	436, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AsuII	TTCGAA	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	25, 160
BccI	CCATC	2 cut(s)	169, 445
BcoDI	GTCTC	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	10
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	2 cut(s)	39, 174
BlsI	GCNGC	2 cut(s)	40, 175
BmsI	GCATC	3 cut(s)	298, 468, 517
BpiI	GAAGAC	1 cut(s)	402
Bpu14I	TTCGAA	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	43
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	4 cut(s)	313, 460, 483, 532
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	525
BseRI	GAGGAG	1 cut(s)	480
BseXI	GCAGC	2 cut(s)	25, 160
BseYI	CCCAGC	1 cut(s)	41
BsgI	GTGCAG	2 cut(s)	165, 300
BshFI	GGCC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	568
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	294, 605
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	526
BspPI	GGATC	1 cut(s)	613
BspT104I	TTCGAA	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	2 cut(s)	294, 605
BssNI	GRCGYC	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	137, 229
Bst6I	CTCTTC	3 cut(s)	48, 345, 537
BstACI	GRCGYC	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	534
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	4 cut(s)	313, 460, 483, 532
BstKTI	GATC	2 cut(s)	297, 608
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	2 cut(s)	294, 605
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 123, 179, 230
BstNSI	RCATGY	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	25, 160
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	2 cut(s)	294, 605
BstYI	RGATCY	2 cut(s)	294, 605
BsuRI	GGCC	1 cut(s)	224
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	4 cut(s)	313, 460, 483, 532
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	171
CseI	GACGC	1 cut(s)	57
CviAII	CATG	5 cut(s)	122, 170, 392, 400, 433
CviJI	RGCY	9 cut(s)	5, 21, 38, 224, 233, 248, 323, 359, 491
CviKI_1	RGCY	9 cut(s)	5, 21, 38, 224, 233, 248, 323, 359, 491
DdeI	CTNAG	1 cut(s)	534
DpnI	GATC	2 cut(s)	296, 607
DpnII	GATC	2 cut(s)	294, 605
Eam1104I	CTCTTC	3 cut(s)	48, 345, 537
EarI	CTCTTC	3 cut(s)	48, 345, 537
FaeI	CATG	5 cut(s)	125, 173, 395, 403, 436
FatI	CATG	5 cut(s)	121, 169, 391, 399, 432
FauI	CCCGC	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	39, 174
FokI	GGATG	4 cut(s)	320, 467, 490, 539
Fsp4HI	GCNGC	2 cut(s)	39, 174
GluI	GCNGC	2 cut(s)	39, 174
GsaI	CCCAGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	1 cut(s)	568
HgaI	GACGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	5 cut(s)	125, 173, 395, 403, 436
HinfI	GANTC	1 cut(s)	368
HpaII	CCGG	1 cut(s)	568
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	2 cut(s)	77, 298
Hpy8I	GTNNAC	1 cut(s)	593
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	214, 368, 467
HpyCH4III	ACNGT	2 cut(s)	137, 229
HpyCH4V	TGCA	6 cut(s)	95, 182, 317, 481, 530, 577
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 123, 179, 230
HpyF3I	CTNAG	1 cut(s)	534
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	5 cut(s)	125, 173, 395, 403, 436
Kzo9I	GATC	2 cut(s)	294, 605
LpnPI	CCDG	6 cut(s)	27, 90, 170, 258, 333, 581
Lsp1109I	GCAGC	2 cut(s)	25, 160
LweI	GCATC	3 cut(s)	298, 468, 517
MaeIII	GTNAC	2 cut(s)	97, 137
MalI	GATC	2 cut(s)	296, 607
MboI	GATC	2 cut(s)	294, 605
MboII	GAAGA	9 cut(s)	62, 65, 224, 359, 362, 395, 407, 551, 554
MflI	RGATCY	2 cut(s)	294, 605
MluCI	AATT	2 cut(s)	436, 554
MnlI	CCTC	7 cut(s)	121, 168, 298, 458, 463, 529, 538
MseI	TTAA	2 cut(s)	407, 558
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	1 cut(s)	568
MwoI	GCNNNNNNNGC	4 cut(s)	35, 123, 179, 230
NdeII	GATC	2 cut(s)	294, 605
NlaIII	CATG	5 cut(s)	125, 173, 395, 403, 436
NmuCI	GTSAC	1 cut(s)	137
NspI	RCATGY	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	381
PaeI	GCATGC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	40, 175
PspFI	CCCAGC	1 cut(s)	41
PsuI	RGATCY	2 cut(s)	294, 605
PvuII	CAGCTG	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	407, 558
SatI	GCNGC	2 cut(s)	39, 174
Sau3AI	GATC	2 cut(s)	294, 605
SetI	ASST	6 cut(s)	235, 325, 361, 379, 549, 616
SfaNI	GCATC	3 cut(s)	298, 468, 517
SfcI	CTRYAG	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SphI	GCATGC	1 cut(s)	173
Sse9I	AATT	2 cut(s)	436, 554
SsiI	CCGC	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	137, 229
TaqI	TCGA	2 cut(s)	299, 381
TasI	AATT	2 cut(s)	436, 554
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	407, 558
Tru9I	TTAA	2 cut(s)	407, 558
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	2 cut(s)	38, 173
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	6 cut(s)	360, 381, 402, 408, 440, 449
TspRI	CASTG	1 cut(s)	142
XapI	RAATTY	2 cut(s)	436, 554
XceI	RCATGY	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.