Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

56999395 .. 57002645

Gene Structure 3251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTTGAAACAAGATATGGCGGGAAGCGCTATCGAGAGTTGCAAGAGGAAGCAAGCTTATATAGAGAGGTTGTGGGATGAAAAAGAAGAAGTGTCAAACAAATACAAAAAGTTGAAGACAAAGATGAAGAAGAAGCAAGAAGAGATTAGAAAATGGAGAAACAAATGCAGACGACTAATGATGATAGTGCAAAGGATAGAAAAAGATGAAGATGTTCCTGCTGCTGTTCCTACTCGTGCTACTGCTCCTACAAATGAACCAAGGACAAGATCATCGATAAAGAGAATCAAAGAAATAACCGATCGGAAAGAGAAGCAACTAGAAGGTTTTGAGGTGCGAAACCATCGAAGAAACATAGGAAGAAGAGCAATTAAAGGACTTCACAAACATATTTGTAATACCCGAAAATTCAAATTAAATTCCGATGACCTTTTGGAAATGATTTCGTGGTCATGTGCAAAAGTACGAAGCTTGGAGGAGTTGTGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

163

Amino Acids

19.54

Weight (kDa)

10.07

Isoelectric Point (pI)

77.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	20
AcsI	RAATTY	2 cut(s)	407, 418
AfaI	GTAC	1 cut(s)	465
AfeI	AGCGCT	1 cut(s)	28
AgsI	TTSAA	3 cut(s)	7, 115, 412
AluBI	AGCT	2 cut(s)	56, 471
AluI	AGCT	2 cut(s)	56, 471
Aor51HI	AGCGCT	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	2 cut(s)	407, 418
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	29
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	351
BfaI	CTAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	260
BsaXI	ACNNNNNCTCC	1 cut(s)	467
BseCI	ATCGAT	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	208
Bsh1285I	CGRYCG	1 cut(s)	304
BshVI	ATCGAT	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	269, 301
BspACI	CCGC	1 cut(s)	20
BspDI	ATCGAT	1 cut(s)	275
BspQI	GCTCTTC	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	269, 301
BssSI	CACGAG	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	234
Bst6I	CTCTTC	2 cut(s)	135, 358
BstC8I	GCNNGC	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	2 cut(s)	272, 304
BstMBI	GATC	2 cut(s)	269, 301
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	122
Bsu15I	ATCGAT	1 cut(s)	275
BsuTUI	ATCGAT	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	1 cut(s)	29
ClaI	ATCGAT	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	1 cut(s)	453
CviJI	RGCY	2 cut(s)	56, 471
CviKI_1	RGCY	2 cut(s)	56, 471
CviQI	GTAC	1 cut(s)	464
DpnI	GATC	2 cut(s)	271, 303
DpnII	GATC	2 cut(s)	269, 301
Eam1104I	CTCTTC	2 cut(s)	135, 358
EarI	CTCTTC	2 cut(s)	135, 358
Eco130I	CCWWGG	1 cut(s)	260
Eco47III	AGCGCT	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	1 cut(s)	456
FaiI	YATR	6 cut(s)	17, 60, 62, 356, 390, 454
FatI	CATG	1 cut(s)	452
FauI	CCCGC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	30
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	456
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HindIII	AAGCTT	2 cut(s)	54, 469
HinfI	GANTC	1 cut(s)	285
Hpy188I	TCNGA	2 cut(s)	306, 424
Hpy188III	TCNNGA	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	317
HpyCH4V	TGCA	4 cut(s)	42, 168, 190, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	456
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	269, 301
LguI	GCTCTTC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	1 cut(s)	231
Lsp1109I	GCAGC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	320
MalI	GATC	2 cut(s)	271, 303
MboI	GATC	2 cut(s)	269, 301
MboII	GAAGA	9 cut(s)	98, 127, 139, 142, 152, 221, 360, 372, 375
MluCI	AATT	5 cut(s)	369, 407, 413, 418, 487
MnlI	CCTC	4 cut(s)	39, 60, 325, 469
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	2 cut(s)	372, 416
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	2 cut(s)	269, 301
NlaIII	CATG	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	223
Ple19I	CGATCG	1 cut(s)	304
PvuI	CGATCG	1 cut(s)	304
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	358
SaqAI	TTAA	2 cut(s)	372, 416
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	269, 301
SetI	ASST	6 cut(s)	58, 71, 328, 336, 432, 473
Sse9I	AATT	5 cut(s)	369, 407, 413, 418, 487
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	260
TaqI	TCGA	3 cut(s)	33, 275, 346
TasI	AATT	5 cut(s)	369, 407, 413, 418, 487
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	372, 416
Tru9I	TTAA	2 cut(s)	372, 416
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	93, 140, 222, 270
XapI	RAATTY	2 cut(s)	407, 418
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.