Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Reverse (-)

61474090 .. 61476396

Gene Structure 2307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTTGAAACAAGATATGGCAGGAAGCGCTATCGAGAGCTGCAAGAGGAAGCAAGCTTATATAGAGAGGTTGTGGGATGAAAAAGAAGAAGTGTCAAACAAATACAAAAAGTTGAAGACAAAGATGAAGAAGAAGCAAGAAGAGATTAGAAAATGGAGAAACAAATGCAGACAACTAATGATGATAGTGCAAAGTGTAGAAAAAGATGAAGAGGCCAATGAAGATGCTACTGTTGCTGCTCCTGCAGCTGTTCCTGCTCATGCTACTGCTCCTACAAATGAACCAAGGACACGATCAGCGATAAAGAGAATCAAAGAAAGAACTGATCGGAAAGAGAAGCAACTAGAAGGTTTTGAGGTGCAGAAACCATCGAAGAAACAGAGGAAGAAGAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

132

Amino Acids

15.47

Weight (kDa)

9.88

Isoelectric Point (pI)

68.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfeI	AGCGCT	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	7, 115
AluBI	AGCT	3 cut(s)	39, 56, 248
AluI	AGCT	3 cut(s)	39, 56, 248
Aor51HI	AGCGCT	1 cut(s)	28
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	3 cut(s)	39, 236, 245
AspLEI	GCGC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	26, 223, 257
BccI	CCATC	1 cut(s)	376
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	3 cut(s)	40, 237, 246
BlsI	GCNGC	3 cut(s)	41, 238, 247
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	1 cut(s)	82
BseXI	GCAGC	3 cut(s)	26, 223, 257
BsgI	GTGCAG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	215
Bsp143I	GATC	2 cut(s)	293, 325
BspANI	GGCC	1 cut(s)	215
BspMAI	CTGCAG	1 cut(s)	247
BspQI	GCTCTTC	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	2 cut(s)	293, 325
BssT1I	CCWWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	3 cut(s)	135, 204, 383
BstC8I	GCNNGC	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	2 cut(s)	296, 328
BstMBI	GATC	2 cut(s)	293, 325
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 233, 242, 245, 254
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	3 cut(s)	26, 223, 257
BstV2I	GAAGAC	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	1 cut(s)	29
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	4 cut(s)	39, 56, 215, 248
CviKI_1	RGCY	4 cut(s)	39, 56, 215, 248
DpnI	GATC	2 cut(s)	295, 327
DpnII	GATC	2 cut(s)	293, 325
Eam1104I	CTCTTC	3 cut(s)	135, 204, 383
EarI	CTCTTC	3 cut(s)	135, 204, 383
Eco130I	CCWWGG	1 cut(s)	284
Eco47III	AGCGCT	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	1 cut(s)	263
FaiI	YATR	4 cut(s)	17, 60, 62, 261
FatI	CATG	1 cut(s)	259
Fnu4HI	GCNGC	3 cut(s)	40, 237, 246
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	40, 237, 246
FspBI	CTAG	1 cut(s)	344
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	3 cut(s)	40, 237, 246
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	1 cut(s)	309
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	42, 168, 190, 245, 361
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 233, 242, 245, 254
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	293, 325
LguI	GCTCTTC	1 cut(s)	383
LmnI	GCTCC	2 cut(s)	244, 274
LpnPI	CCDG	3 cut(s)	6, 255, 267
Lsp1109I	GCAGC	3 cut(s)	26, 223, 257
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	344
MalI	GATC	2 cut(s)	295, 327
MboI	GATC	2 cut(s)	293, 325
MboII	GAAGA	9 cut(s)	98, 127, 139, 142, 152, 221, 233, 385, 397
MluCI	AATT	1 cut(s)	394
MnlI	CCTC	5 cut(s)	39, 60, 205, 349, 375
MseI	TTAA	1 cut(s)	397
MspA1I	CMGCKG	1 cut(s)	248
MwoI	GCNNNNNNNGC	5 cut(s)	26, 233, 242, 245, 254
NdeII	GATC	2 cut(s)	293, 325
NlaIII	CATG	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	309
PkrI	GCNGC	3 cut(s)	41, 238, 247
PstI	CTGCAG	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	248
SapI	GCTCTTC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	397
SatI	GCNGC	3 cut(s)	40, 237, 246
Sau3AI	GATC	2 cut(s)	293, 325
SetI	ASST	6 cut(s)	41, 58, 71, 250, 352, 360
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	243
Sse9I	AATT	1 cut(s)	394
SspMI	CTAG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	33, 371
TasI	AATT	1 cut(s)	394
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	397
Tru9I	TTAA	1 cut(s)	397
TseI	GCWGC	3 cut(s)	39, 236, 245
TspDTI	ATGAA	5 cut(s)	93, 140, 222, 234, 294
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.