Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Reverse (-)

39357432 .. 39361996

Gene Structure 4565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008797

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGGTTGGTAAGGTGAGAAGAAAAACTCTGGCATGTAGGAAAAAGTTTCCAAGCACAAGATCAAGATTGAAGAGACAAAAGCAGAAAGAGGTGGAACACGACAGGGAAGAAGAGGAAAATGAAGAAAAGGAGGAAGAAGATGAAGAAGAACAAGACGGGGGAGAAGAGGATAATGAAGAAGAGGAGGAGGAAGAAGAAAAGAACGATGGAGCAAGGAACAGAGGCAAAGGCAAGAAACAATCATATTGCCAATACAGGTGCAATATGATTGCCTTCCACGACGTGCTTCATAAAGTGTATGAGCAGCTCAATCGTGAAGAAAAGATGGGATTGAAAGCCGAGTTGAAGAAGACGCCATTTTGGAACTTGACTGAAGCTTATGATAAGGGATTGATGACTAAGAACACAGCTGCAAAATTAGATCGAGAGATGTATAGGTTAGTGCAATGCTACAAGCCGGCTTTGAAGAAATTTAAGTTTGGAAACAAGTTGGCAGAAATAAGTGTATCGGACGTGCAATACATTTTGGGTTTGCCAAACCGAAAATCAGCTATTACGGTGCCAAACCCAATAGATGATCCTAAGAAGTCGACTGATCATCCTCTTGTTCGAAGGTTCTTTCCAAATGACCAAAGGATAAAAAAAGCAAGAATCATGAGATGTATTGATGAGCAGTTAAGGGAAAAAGCTCCGGGGTGGATAGAGAACATGACAAAGTTGCTGCTACTGCATTTGTTCATCACGCTACTGTTTGCCAGCTCGGAGTCAACCTTAGGATGGAGCTTCGTGAAATGCATCACAGATATTGAGACAATGAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

276

Amino Acids

32.47

Weight (kDa)

8.37

Isoelectric Point (pI)

57.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	562
AccI	GTMKAC	1 cut(s)	593
AclWI	GGATC	1 cut(s)	575
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	356
AdeI	CACNNNGTG	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	780
AgsI	TTSAA	4 cut(s)	73, 337, 349, 469
AjiI	CACGTC	2 cut(s)	286, 517
AluBI	AGCT	7 cut(s)	310, 380, 413, 554, 692, 762, 786
AluI	AGCT	7 cut(s)	310, 380, 413, 554, 692, 762, 786
Alw26I	GTCTC	2 cut(s)	70, 806
AlwI	GGATC	1 cut(s)	575
ApeKI	GCWGC	3 cut(s)	307, 413, 724
ApoI	RAATTY	1 cut(s)	473
AsuC2I	CCSGG	1 cut(s)	696
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	613
AxyI	CCTNAGG	1 cut(s)	775
BanI	GGYRCC	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	359
BbvI	GCAGC	3 cut(s)	319, 400, 711
BccI	CCATC	3 cut(s)	203, 322, 774
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	1 cut(s)	696
BcoDI	GTCTC	2 cut(s)	70, 806
BisI	GCNGC	3 cut(s)	308, 414, 725
BlsI	GCNGC	3 cut(s)	309, 415, 726
Bme1390I	CCNGG	1 cut(s)	696
BmgBI	CACGTC	2 cut(s)	286, 517
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	1 cut(s)	696
BmsI	GCATC	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	359
Bpu14I	TTCGAA	1 cut(s)	613
BpuMI	CCSGG	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	1 cut(s)	780
Bse118I	RCCGGY	1 cut(s)	460
Bse21I	CCTNAGG	1 cut(s)	775
Bse3DI	GCAATG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	2 cut(s)	601, 785
BseLI	CCNNNNNNNGG	1 cut(s)	780
BseMI	GCAATG	1 cut(s)	455
BseRI	GAGGAG	2 cut(s)	200, 203
BseXI	GCAGC	3 cut(s)	319, 400, 711
BshNI	GGYRCC	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	461, 695
BslI	CCNNNNNNNGG	1 cut(s)	780
BsmAI	GTCTC	2 cut(s)	70, 806
Bsp119I	TTCGAA	1 cut(s)	613
Bsp143I	GATC	4 cut(s)	62, 424, 580, 598
BspHI	TCATGA	1 cut(s)	657
BspLI	GGNNCC	1 cut(s)	564
BspPI	GGATC	1 cut(s)	575
BspT104I	TTCGAA	1 cut(s)	613
BspT107I	GGYRCC	1 cut(s)	562
BsrDI	GCAATG	1 cut(s)	455
BsrFI	RCCGGY	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	4 cut(s)	62, 424, 580, 598
BssNI	GRCGYC	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	562, 753
Bst6I	CTCTTC	5 cut(s)	68, 108, 162, 177, 815
BstACI	GRCGYC	1 cut(s)	356
BstBI	TTCGAA	1 cut(s)	613
BstC8I	GCNNGC	2 cut(s)	462, 760
BstDEI	CTNAG	3 cut(s)	402, 585, 775
BstF5I	GGATG	2 cut(s)	601, 785
BstKTI	GATC	4 cut(s)	65, 427, 583, 601
BstMAI	GTCTC	2 cut(s)	70, 806
BstMBI	GATC	4 cut(s)	62, 424, 580, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	730
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	694
BstV1I	GCAGC	3 cut(s)	319, 400, 711
BstV2I	GAAGAC	1 cut(s)	359
Bsu36I	CCTNAGG	1 cut(s)	775
BtrI	CACGTC	2 cut(s)	286, 517
BtsCI	GGATG	2 cut(s)	601, 785
Cac8I	GCNNGC	2 cut(s)	462, 760
CciI	TCATGA	1 cut(s)	657
Cfr10I	RCCGGY	1 cut(s)	460
CseI	GACGC	1 cut(s)	364
CviAII	CATG	3 cut(s)	36, 658, 712
DdeI	CTNAG	3 cut(s)	402, 585, 775
DpnI	GATC	4 cut(s)	64, 426, 582, 600
DpnII	GATC	4 cut(s)	62, 424, 580, 598
DraIII	CACNNNGTG	1 cut(s)	286
Eam1104I	CTCTTC	5 cut(s)	68, 108, 162, 177, 815
EarI	CTCTTC	5 cut(s)	68, 108, 162, 177, 815
Eco57I	CTGAAG	1 cut(s)	396
Eco81I	CCTNAGG	1 cut(s)	775
EcoT22I	ATGCAT	1 cut(s)	800
FaeI	CATG	3 cut(s)	39, 661, 715
FaiI	YATR	9 cut(s)	37, 247, 269, 294, 303, 384, 438, 659, 713
FatI	CATG	3 cut(s)	35, 657, 711
FbaI	TGATCA	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	593
Fnu4HI	GCNGC	3 cut(s)	308, 414, 725
FokI	GGATG	2 cut(s)	588, 792
Fsp4HI	GCNGC	3 cut(s)	308, 414, 725
GluI	GCNGC	3 cut(s)	308, 414, 725
HapII	CCGG	2 cut(s)	461, 695
HgaI	GACGC	1 cut(s)	364
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	3 cut(s)	39, 661, 715
HincII	GTYRAC	2 cut(s)	594, 771
HindII	GTYRAC	2 cut(s)	594, 771
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	2 cut(s)	654, 767
HpaII	CCGG	2 cut(s)	461, 695
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	594, 771
Hpy188I	TCNGA	2 cut(s)	514, 766
Hpy188III	TCNNGA	5 cut(s)	66, 317, 428, 658, 790
Hpy8I	GTNNAC	2 cut(s)	594, 771
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	286, 609
HpyCH4III	ACNGT	2 cut(s)	562, 753
HpyCH4IV	ACGT	2 cut(s)	285, 516
HpyCH4V	TGCA	6 cut(s)	264, 416, 448, 520, 733, 798
HpyF10VI	GCNNNNNNNGC	1 cut(s)	730
HpyF3I	CTNAG	3 cut(s)	402, 585, 775
HpySE526I	ACGT	2 cut(s)	285, 516
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	3 cut(s)	39, 661, 715
KroI	GCCGGC	1 cut(s)	460
KroNI	GCCGGC	1 cut(s)	462
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	4 cut(s)	62, 424, 580, 598
LmnI	GCTCC	3 cut(s)	212, 697, 783
LpnPI	CCDG	6 cut(s)	17, 91, 244, 474, 708, 772
Lsp1109I	GCAGC	3 cut(s)	319, 400, 711
LweI	GCATC	1 cut(s)	807
MaeII	ACGT	2 cut(s)	285, 516
MalI	GATC	4 cut(s)	64, 426, 582, 600
MboI	GATC	4 cut(s)	62, 424, 580, 598
MluCI	AATT	2 cut(s)	419, 473
MlyI	GAGTC	1 cut(s)	776
MnlI	CCTC	9 cut(s)	85, 109, 127, 163, 178, 181, 184, 218, 615
Mph1103I	ATGCAT	1 cut(s)	800
MroNI	GCCGGC	1 cut(s)	460
MseI	TTAA	2 cut(s)	477, 680
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	2 cut(s)	461, 695
MspR9I	CCNGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	730
NaeI	GCCGGC	1 cut(s)	462
NciI	CCSGG	1 cut(s)	696
NdeII	GATC	4 cut(s)	62, 424, 580, 598
NgoMIV	GCCGGC	1 cut(s)	460
NlaIII	CATG	3 cut(s)	39, 661, 715
NlaIV	GGNNCC	1 cut(s)	564
NmeAIII	GCCGAG	1 cut(s)	367
NsiI	ATGCAT	1 cut(s)	800
NspI	RCATGY	1 cut(s)	39
NspV	TTCGAA	1 cut(s)	613
PagI	TCATGA	1 cut(s)	657
PdiI	GCCGGC	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	654
PkrI	GCNGC	3 cut(s)	309, 415, 726
PleI	GAGTC	1 cut(s)	775
PpsI	GAGTC	1 cut(s)	775
PspN4I	GGNNCC	1 cut(s)	564
PvuII	CAGCTG	1 cut(s)	413
SalI	GTCGAC	1 cut(s)	592
SaqAI	TTAA	2 cut(s)	477, 680
SatI	GCNGC	3 cut(s)	308, 414, 725
Sau3AI	GATC	4 cut(s)	62, 424, 580, 598
SchI	GAGTC	1 cut(s)	776
ScrFI	CCNGG	1 cut(s)	696
SfaNI	GCATC	1 cut(s)	807
SfuI	TTCGAA	1 cut(s)	613
Sse9I	AATT	2 cut(s)	419, 473
StyD4I	CCNGG	1 cut(s)	694
TaaI	ACNGT	2 cut(s)	562, 753
TaiI	ACGT	2 cut(s)	288, 519
TaqI	TCGA	3 cut(s)	427, 593, 613
TasI	AATT	2 cut(s)	419, 473
TfiI	GAWTC	1 cut(s)	654
Tru1I	TTAA	2 cut(s)	477, 680
Tru9I	TTAA	2 cut(s)	477, 680
TseI	GCWGC	3 cut(s)	307, 413, 724
TspDTI	ATGAA	5 cut(s)	138, 159, 192, 281, 730
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	593
Zsp2I	ATGCAT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.