Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002698.1

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Reverse (-)

47424 .. 50284

Gene Structure 2861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002698.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atggaggttggtaaggtgagaagaaaaactctggcatgtaggaaaaagtttccaagcacaagagcaagattgaagagacaaaagcagaaagaggtggaacaagacagggaagaagagaaaaatggcgaagaagaggaggaagaagaagagaacgatggagcaatgaatagaggcaaaggccagaaacaatcatattgccaatacaggtgcaatatgattgccttccatgacatgcttcataaagtgtatgagcagctcaatcgtgaacaaaagatgggattgaaagccgagttgaagaagatgccattttggaacttgattgaagcttatgataagggattgatgactaagaacacagctgcaaaatcagatcgagagatgcataggttagtgcaatgctacaagccgactttcaagaaatttaagtttggaaacaagttggcagaaataagtgtatcggacgtgcaatacattttgggtttgccaaaccgaaaatcagctatcacggcgccaaacccaatagatgatcctaagaagccaactgatcatcctcttgttcgaagtactatgcttgttgaaattaaaggcagagaagcaatgactccagggtgcgtcaagtggagtctccctcaattcacaaaagaattgcagaaaatgccagttgatgaaataaagattaataatgcagttgccgacaacaatagaagcaaaaatggcaaggaaaacagtgacgatgactttgagaaccctccatcaaagcatgctgctactgcacaggcaaaagggcataaaagacaaagagaagaaaagaaggtcacagtagctgccagaaaaccagccaaaaagtgggtggcagaaaagagagcaaaaagtaaagaaaataagatttcgaatgaggatgctactgcaccagctgaaaaggaaaagcgtagaaatgaagaagagacagctgataatgaatcagaaggtttcgaagatgaacatgaagacctgacattaagagattgggtggatatgaacagcatgaattttgcgaaaaagattgatgagaataaaggagaggaatggatgcaaacaaaaaccacaagtggagtaaatgtcaatgatatggatttgggtgcaactgaggaagaagaggtaaataaatttaagtttctcggtttatgcagatcaaacgtatctacaagggtgcgccttggagaattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

402

Amino Acids

46.44

Weight (kDa)

8.82

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	508
AccB7I	CCANNNNNTGG	1 cut(s)	846
AclWI	GGATC	1 cut(s)	521
AcsI	RAATTY	4 cut(s)	419, 1027, 1145, 1202
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	1 cut(s)	565
AfiI	CCNNNNNNNGG	1 cut(s)	846
AgsI	TTSAA	6 cut(s)	73, 283, 295, 323, 415, 578
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	7 cut(s)	256, 326, 359, 500, 824, 914, 950
AluI	AGCT	7 cut(s)	256, 326, 359, 500, 824, 914, 950
Alw26I	GTCTC	3 cut(s)	70, 629, 938
AlwI	GGATC	1 cut(s)	521
AlwNI	CAGNNNCTG	1 cut(s)	824
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	4 cut(s)	253, 359, 764, 824
ApoI	RAATTY	4 cut(s)	419, 1027, 1145, 1202
ArsI	GACNNNNNNTTYG	2 cut(s)	722, 754
AseI	ATTAAT	1 cut(s)	678
AspLEI	GCGC	2 cut(s)	511, 1194
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	3 cut(s)	559, 890, 972
BanI	GGYRCC	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	993
BbvI	GCAGC	4 cut(s)	265, 346, 751, 811
BccI	CCATC	3 cut(s)	149, 268, 760
BceAI	ACGGC	1 cut(s)	522
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	1 cut(s)	606
BclI	TGATCA	1 cut(s)	544
BcoDI	GTCTC	3 cut(s)	70, 629, 938
BfoI	RGCGCY	1 cut(s)	512
BisI	GCNGC	4 cut(s)	254, 360, 765, 825
BlsI	GCNGC	4 cut(s)	255, 361, 766, 826
BmcAI	AGTACT	1 cut(s)	565
Bme1390I	CCNGG	1 cut(s)	606
BmgBI	CACGTC	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	606
BmsI	GCATC	4 cut(s)	291, 369, 889, 1059
BpiI	GAAGAC	1 cut(s)	993
BplI	GAGNNNNNCTC	2 cut(s)	613, 645
BpmI	CTGGAG	1 cut(s)	588
Bpu14I	TTCGAA	3 cut(s)	559, 890, 972
BsaHI	GRCGYC	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	605, 1195
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	1 cut(s)	846
Bse1I	ACTGG	1 cut(s)	659
Bse3DI	GCAATG	3 cut(s)	168, 401, 603
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	605, 1195
BseGI	GGATG	3 cut(s)	547, 904, 1074
BseLI	CCNNNNNNNGG	1 cut(s)	846
BseMI	GCAATG	3 cut(s)	168, 401, 603
BseMII	CTCAG	1 cut(s)	1116
BseNI	ACTGG	1 cut(s)	659
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	4 cut(s)	265, 346, 751, 811
BsgI	GTGCAG	2 cut(s)	756, 891
BshFI	GGCC	1 cut(s)	180
BshNI	GGYRCC	1 cut(s)	508
BslI	CCNNNNNNNGG	1 cut(s)	846
BsmAI	GTCTC	3 cut(s)	70, 629, 938
BsnI	GGCC	1 cut(s)	180
Bsp119I	TTCGAA	3 cut(s)	559, 890, 972
Bsp143I	GATC	4 cut(s)	370, 526, 544, 1169
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	1117
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	521
BspT104I	TTCGAA	3 cut(s)	559, 890, 972
BspT107I	GGYRCC	1 cut(s)	508
BsrDI	GCAATG	3 cut(s)	168, 401, 603
BsrI	ACTGG	1 cut(s)	659
BssECI	CCNNGG	2 cut(s)	605, 1195
BssMI	GATC	4 cut(s)	370, 526, 544, 1169
BssNI	GRCGYC	1 cut(s)	509
BssT1I	CCWWGG	1 cut(s)	1195
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	2 cut(s)	728, 820
Bst6I	CTCTTC	6 cut(s)	68, 108, 126, 141, 936, 1128
BstACI	GRCGYC	1 cut(s)	509
BstAPI	GCANNNNNTGC	1 cut(s)	655
BstBI	TTCGAA	3 cut(s)	559, 890, 972
BstC8I	GCNNGC	1 cut(s)	762
BstDEI	CTNAG	3 cut(s)	348, 531, 1125
BstF5I	GGATG	3 cut(s)	547, 904, 1074
BstH2I	RGCGCY	1 cut(s)	512
BstHHI	GCGC	2 cut(s)	511, 1194
BstKTI	GATC	4 cut(s)	373, 529, 547, 1172
BstMAI	GTCTC	3 cut(s)	70, 629, 938
BstMBI	GATC	4 cut(s)	370, 526, 544, 1169
BstMWI	GCNNNNNNNGC	4 cut(s)	506, 655, 714, 770
BstNI	CCWGG	1 cut(s)	606
BstNSI	RCATGY	3 cut(s)	39, 235, 764
BstSCI	CCNGG	1 cut(s)	604
BstV1I	GCAGC	4 cut(s)	265, 346, 751, 811
BstV2I	GAAGAC	1 cut(s)	993
BsuRI	GGCC	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	3 cut(s)	547, 904, 1074
BtsIMutI	CAGTG	1 cut(s)	733
Cac8I	GCNNGC	1 cut(s)	762
CaiI	CAGNNNCTG	1 cut(s)	824
CfoI	GCGC	2 cut(s)	511, 1194
CseI	GACGC	1 cut(s)	601
Csp6I	GTAC	1 cut(s)	564
CviAII	CATG	6 cut(s)	36, 227, 232, 761, 983, 1024
CviQI	GTAC	1 cut(s)	564
DdeI	CTNAG	3 cut(s)	348, 531, 1125
DinI	GGCGCC	1 cut(s)	510
DpnI	GATC	4 cut(s)	372, 528, 546, 1171
DpnII	GATC	4 cut(s)	370, 526, 544, 1169
Eam1104I	CTCTTC	6 cut(s)	68, 108, 126, 141, 936, 1128
EarI	CTCTTC	6 cut(s)	68, 108, 126, 141, 936, 1128
Eco130I	CCWWGG	1 cut(s)	1195
EcoRII	CCWGG	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	1195
EcoT22I	ATGCAT	1 cut(s)	384
EgeI	GGCGCC	1 cut(s)	510
EheI	GGCGCC	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	1195
FaeI	CATG	6 cut(s)	39, 230, 235, 764, 986, 1027
FatI	CATG	6 cut(s)	35, 226, 231, 760, 982, 1023
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	4 cut(s)	254, 360, 765, 825
FokI	GGATG	3 cut(s)	534, 911, 1081
Fsp4HI	GCNGC	4 cut(s)	254, 360, 765, 825
GlaI	GCGC	2 cut(s)	510, 1193
GluI	GCNGC	4 cut(s)	254, 360, 765, 825
GsuI	CTGGAG	1 cut(s)	588
HaeII	RGCGCY	1 cut(s)	512
HaeIII	GGCC	1 cut(s)	180
HgaI	GACGC	1 cut(s)	601
HhaI	GCGC	2 cut(s)	511, 1194
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	6 cut(s)	39, 230, 235, 764, 986, 1027
Hin6I	GCGC	2 cut(s)	509, 1192
HinP1I	GCGC	2 cut(s)	509, 1192
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	3 cut(s)	601, 622, 959
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	3 cut(s)	370, 460, 964
Hpy188III	TCNNGA	3 cut(s)	263, 374, 415
Hpy8I	GTNNAC	1 cut(s)	266
HpyAV	CCTTC	3 cut(s)	232, 805, 959
HpyCH4III	ACNGT	2 cut(s)	728, 820
HpyCH4IV	ACGT	2 cut(s)	462, 1176
HpyF10VI	GCNNNNNNNGC	4 cut(s)	506, 655, 714, 770
HpyF3I	CTNAG	3 cut(s)	348, 531, 1125
HpySE526I	ACGT	2 cut(s)	462, 1176
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	6 cut(s)	39, 230, 235, 764, 986, 1027
HspAI	GCGC	2 cut(s)	509, 1192
KasI	GGCGCC	1 cut(s)	508
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	4 cut(s)	370, 526, 544, 1169
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	4 cut(s)	265, 346, 751, 811
LweI	GCATC	4 cut(s)	291, 369, 889, 1059
MaeII	ACGT	2 cut(s)	462, 1176
MaeIII	GTNAC	2 cut(s)	728, 814
MalI	GATC	4 cut(s)	372, 528, 546, 1171
MboI	GATC	4 cut(s)	370, 526, 544, 1169
MluCI	AATT	7 cut(s)	419, 579, 632, 644, 1027, 1145, 1202
Mly113I	GGCGCC	1 cut(s)	509
MlyI	GAGTC	2 cut(s)	595, 631
Mph1103I	ATGCAT	1 cut(s)	384
MseI	TTAA	5 cut(s)	423, 582, 678, 998, 1149
MspA1I	CMGCKG	3 cut(s)	359, 914, 950
MspR9I	CCNGG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	4 cut(s)	506, 655, 714, 770
NarI	GGCGCC	1 cut(s)	509
NdeII	GATC	4 cut(s)	370, 526, 544, 1169
NlaIII	CATG	6 cut(s)	39, 230, 235, 764, 986, 1027
NlaIV	GGNNCC	1 cut(s)	510
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	2 cut(s)	728, 814
NsiI	ATGCAT	1 cut(s)	384
NspI	RCATGY	3 cut(s)	39, 235, 764
NspV	TTCGAA	3 cut(s)	559, 890, 972
PaeI	GCATGC	1 cut(s)	764
PfeI	GAWTC	1 cut(s)	959
PflMI	CCANNNNNTGG	1 cut(s)	846
PkrI	GCNGC	4 cut(s)	255, 361, 766, 826
PleI	GAGTC	2 cut(s)	595, 630
PluTI	GGCGCC	1 cut(s)	512
PpsI	GAGTC	2 cut(s)	595, 630
PshBI	ATTAAT	1 cut(s)	678
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	1 cut(s)	510
PstNI	CAGNNNCTG	1 cut(s)	824
PvuII	CAGCTG	3 cut(s)	359, 914, 950
RsaI	GTAC	1 cut(s)	565
RsaNI	GTAC	1 cut(s)	564
SaqAI	TTAA	5 cut(s)	423, 582, 678, 998, 1149
SatI	GCNGC	4 cut(s)	254, 360, 765, 825
Sau3AI	GATC	4 cut(s)	370, 526, 544, 1169
ScaI	AGTACT	1 cut(s)	565
SchI	GAGTC	2 cut(s)	595, 631
ScrFI	CCNGG	1 cut(s)	606
SfaNI	GCATC	4 cut(s)	291, 369, 889, 1059
SfoI	GGCGCC	1 cut(s)	510
SfuI	TTCGAA	3 cut(s)	559, 890, 972
SphI	GCATGC	1 cut(s)	764
Sse9I	AATT	7 cut(s)	419, 579, 632, 644, 1027, 1145, 1202
SspDI	GGCGCC	1 cut(s)	508
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	1 cut(s)	1195
TaaI	ACNGT	2 cut(s)	728, 820
TaiI	ACGT	2 cut(s)	465, 1179
TaqI	TCGA	4 cut(s)	373, 559, 890, 972
TasI	AATT	7 cut(s)	419, 579, 632, 644, 1027, 1145, 1202
TatI	WGTACW	1 cut(s)	563
TfiI	GAWTC	1 cut(s)	959
Tru1I	TTAA	5 cut(s)	423, 582, 678, 998, 1149
Tru9I	TTAA	5 cut(s)	423, 582, 678, 998, 1149
TscAI	CASTG	1 cut(s)	733
TseFI	GTSAC	2 cut(s)	728, 814
TseI	GCWGC	4 cut(s)	253, 359, 764, 824
Tsp45I	GTSAC	2 cut(s)	728, 814
TspDTI	ATGAA	9 cut(s)	179, 227, 681, 951, 972, 993, 999, 1031, 1040
TspRI	CASTG	1 cut(s)	733
Van91I	CCANNNNNTGG	1 cut(s)	846
VspI	ATTAAT	1 cut(s)	678
XapI	RAATTY	4 cut(s)	419, 1027, 1145, 1202
XceI	RCATGY	3 cut(s)	39, 235, 764
XcmI	CCANNNNNNNNNTGG	2 cut(s)	843, 847
ZrmI	AGTACT	1 cut(s)	565
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.