Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001136.1

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

49422 .. 51455

Gene Structure 2034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001136.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atggatatgatggctggttttggtggagatggagatcttgtggtattcacatactcacatttcgagtggattcagtgttttgtggtgataagaaaaactctggaatgtaggaaaaagtttccaagcacaagagtaagattgaagagacaaaagcagaaagaggtggaacaagacagggaagaagaggaaaatgaagaagaagaggaggaagaagaagagaacgatggagcaatgaacagaggcaaaggccagaaacaatcatattgccaatacaggtgcaatatgattgccttccacgacgtgcttcataaagtgtatgagcagatcaatcgtgaagaaaatatgggattgaaagccgagttgaagaagacgccattttggaacttgattgaagcttatgataagggattgatgactaagaacatagctgcaaaatcagatcgagagatgcataggttagttcaatgctacaagccggctttgaagaaatttaagtttggaaacaagttggcagaaataagtgtaacggacgtgcaatacattttgggtttgccaaaccgaaaatcagctatcacgggaaaaagctccggggtggatagagaacatgacaaagttgctgctactacatttgttcgtcacgctactgtttgcaagctcagggcaaccttaggatggagcttcgtgaaatgcatcacggatattgagacaatgaagagatataattgggcacaagctgttagagactatttgctattctgtttgcaatctgctacaaagggaaaagcaaggcaaatcagtggatgtgtaacattaatcccctattggatatccgagaggagtactatgcttgttgaaattaaaggcagagaagcaatgactccagggtgcgtcaagtggagtctccctcaattcacaaaagaattgcagaaaatgcaagttgatgaaatagaggcgatggatatgctactgtctgctactatatatgcttatgctactgtgcaatatgctactaacttgaaaaatattttattgcagattgataatgtagttgccgacaacaatagaagcaaacatggcaaggaaaacagtgatgatgactttgagaaccctccatcaaagcatgctgctattgcacaggcaaaggggcagaaaagacaaagagaagaaaagaaggccacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

393

Amino Acids

45.33

Weight (kDa)

8.71

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	488
AcyI	GRCGYC	1 cut(s)	371
AdeI	CACNNNGTG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	841
AfiI	CCNNNNNNNGG	1 cut(s)	672
AgsI	TTSAA	8 cut(s)	142, 352, 364, 392, 464, 484, 854, 1018
AjiI	CACGTC	2 cut(s)	301, 532
AjnI	CCWGG	1 cut(s)	880
AluBI	AGCT	7 cut(s)	395, 428, 569, 585, 655, 678, 734
AluI	AGCT	7 cut(s)	395, 428, 569, 585, 655, 678, 734
Alw26I	GTCTC	4 cut(s)	139, 698, 735, 905
AoxI	GGCC	2 cut(s)	247, 1173
ApeKI	GCWGC	3 cut(s)	428, 617, 1124
ApoI	RAATTY	1 cut(s)	488
AseI	ATTAAT	1 cut(s)	812
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	1 cut(s)	97
AxyI	CCTNAGG	1 cut(s)	667
BaeGI	GKGCMC	1 cut(s)	730
BbsI	GAAGAC	1 cut(s)	374
BbvI	GCAGC	3 cut(s)	415, 604, 1111
BccI	CCATC	6 cut(s)	4, 23, 218, 666, 949, 1120
BcgI	CGANNNNNNTGC	4 cut(s)	311, 345, 943, 977
BciT130I	CCWGG	1 cut(s)	882
BcnI	CCSGG	1 cut(s)	589
BcoDI	GTCTC	4 cut(s)	139, 698, 735, 905
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	3 cut(s)	429, 618, 1125
BlsI	GCNGC	3 cut(s)	430, 619, 1126
BmcAI	AGTACT	1 cut(s)	841
Bme1390I	CCNGG	2 cut(s)	589, 882
BmgBI	CACGTC	2 cut(s)	301, 532
BmrFI	CCNGG	2 cut(s)	589, 882
BmsI	GCATC	2 cut(s)	438, 699
BpiI	GAAGAC	1 cut(s)	374
BplI	GAGNNNNNCTC	2 cut(s)	889, 921
BpmI	CTGGAG	1 cut(s)	864
Bpu10I	CCTNAGC	1 cut(s)	656
BpuMI	CCSGG	1 cut(s)	589
BsaBI	GATNNNNATC	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	588, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	672
Bse118I	RCCGGY	1 cut(s)	475
Bse21I	CCTNAGG	1 cut(s)	667
Bse3DI	GCAATG	2 cut(s)	237, 879
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	882
BseDI	CCNNGG	2 cut(s)	588, 881
BseGI	GGATG	2 cut(s)	677, 806
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	672
BseMI	GCAATG	2 cut(s)	237, 879
BseMII	CTCAG	1 cut(s)	670
BseRI	GAGGAG	2 cut(s)	218, 850
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	3 cut(s)	415, 604, 1111
BshFI	GGCC	2 cut(s)	249, 1175
BsiSI	CCGG	2 cut(s)	476, 588
BslI	CCNNNNNNNGG	1 cut(s)	672
BsmAI	GTCTC	4 cut(s)	139, 698, 735, 905
BsnI	GGCC	2 cut(s)	249, 1175
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	3 cut(s)	34, 324, 439
BspANI	GGCC	2 cut(s)	249, 1175
BspCNI	CTCAG	1 cut(s)	669
BsrDI	GCAATG	2 cut(s)	237, 879
BsrFI	RCCGGY	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	588, 881
BssMI	GATC	3 cut(s)	34, 324, 439
BssNI	GRCGYC	1 cut(s)	371
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	4 cut(s)	646, 969, 997, 1088
Bst6I	CTCTTC	5 cut(s)	137, 177, 195, 210, 707
BstACI	GRCGYC	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	931
BstC8I	GCNNGC	3 cut(s)	477, 653, 1122
BstDEI	CTNAG	3 cut(s)	417, 656, 667
BstF5I	GGATG	2 cut(s)	677, 806
BstKTI	GATC	3 cut(s)	37, 327, 442
BstMAI	GTCTC	4 cut(s)	139, 698, 735, 905
BstMBI	GATC	3 cut(s)	34, 324, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	931, 1074, 1130
BstNI	CCWGG	1 cut(s)	882
BstNSI	RCATGY	1 cut(s)	1124
BstSCI	CCNGG	2 cut(s)	587, 880
BstSLI	GKGCMC	1 cut(s)	730
BstV1I	GCAGC	3 cut(s)	415, 604, 1111
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
Bsu36I	CCTNAGG	1 cut(s)	667
BsuRI	GGCC	2 cut(s)	249, 1175
BtgZI	GCGATG	1 cut(s)	968
BtrI	CACGTC	2 cut(s)	301, 532
BtsCI	GGATG	2 cut(s)	677, 806
BtsIMutI	CAGTG	3 cut(s)	80, 802, 1093
Cac8I	GCNNGC	3 cut(s)	477, 653, 1122
Cfr10I	RCCGGY	1 cut(s)	475
CseI	GACGC	2 cut(s)	379, 877
Csp6I	GTAC	1 cut(s)	840
CviAII	CATG	3 cut(s)	605, 1073, 1121
CviQI	GTAC	1 cut(s)	840
DdeI	CTNAG	3 cut(s)	417, 656, 667
DpnI	GATC	3 cut(s)	36, 326, 441
DpnII	GATC	3 cut(s)	34, 324, 439
DraIII	CACNNNGTG	1 cut(s)	301
Eam1104I	CTCTTC	5 cut(s)	137, 177, 195, 210, 707
EarI	CTCTTC	5 cut(s)	137, 177, 195, 210, 707
Eco32I	GATATC	1 cut(s)	828
Eco81I	CCTNAGG	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	880
EcoRV	GATATC	1 cut(s)	828
EcoT22I	ATGCAT	2 cut(s)	453, 692
FaeI	CATG	3 cut(s)	608, 1076, 1124
FatI	CATG	3 cut(s)	604, 1072, 1120
Fnu4HI	GCNGC	3 cut(s)	429, 618, 1125
FokI	GGATG	2 cut(s)	684, 813
Fsp4HI	GCNGC	3 cut(s)	429, 618, 1125
GluI	GCNGC	3 cut(s)	429, 618, 1125
GsuI	CTGGAG	1 cut(s)	864
HaeIII	GGCC	2 cut(s)	249, 1175
HapII	CCGG	2 cut(s)	476, 588
HgaI	GACGC	2 cut(s)	379, 877
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	3 cut(s)	608, 1076, 1124
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	3 cut(s)	70, 877, 898
HpaII	CCGG	2 cut(s)	476, 588
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	439, 832
Hpy188III	TCNNGA	4 cut(s)	101, 332, 443, 682
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	301, 1165
HpyCH4III	ACNGT	4 cut(s)	646, 969, 997, 1088
HpyCH4IV	ACGT	2 cut(s)	300, 531
HpyF10VI	GCNNNNNNNGC	3 cut(s)	931, 1074, 1130
HpyF3I	CTNAG	3 cut(s)	417, 656, 667
HpySE526I	ACGT	2 cut(s)	300, 531
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	3 cut(s)	608, 1076, 1124
KroI	GCCGGC	1 cut(s)	475
KroNI	GCCGGC	1 cut(s)	477
Kzo9I	GATC	3 cut(s)	34, 324, 439
LmnI	GCTCC	3 cut(s)	227, 590, 675
Lsp1109I	GCAGC	3 cut(s)	415, 604, 1111
LweI	GCATC	2 cut(s)	438, 699
MaeII	ACGT	2 cut(s)	300, 531
MaeIII	GTNAC	3 cut(s)	523, 635, 805
MalI	GATC	3 cut(s)	36, 326, 441
MboI	GATC	3 cut(s)	34, 324, 439
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	730
MluCI	AATT	5 cut(s)	488, 721, 855, 908, 920
MlyI	GAGTC	2 cut(s)	871, 907
MnlI	CCTC	9 cut(s)	154, 178, 196, 199, 233, 828, 915, 943, 1119
Mph1103I	ATGCAT	2 cut(s)	453, 692
MroNI	GCCGGC	1 cut(s)	475
MseI	TTAA	3 cut(s)	492, 812, 858
MspI	CCGG	2 cut(s)	476, 588
MspR9I	CCNGG	2 cut(s)	589, 882
MvaI	CCWGG	1 cut(s)	882
MwoI	GCNNNNNNNGC	3 cut(s)	931, 1074, 1130
NaeI	GCCGGC	1 cut(s)	477
NciI	CCSGG	1 cut(s)	589
NdeII	GATC	3 cut(s)	34, 324, 439
NgoMIV	GCCGGC	1 cut(s)	475
NlaIII	CATG	3 cut(s)	608, 1076, 1124
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	635
NsiI	ATGCAT	2 cut(s)	453, 692
NspI	RCATGY	1 cut(s)	1124
PaeI	GCATGC	1 cut(s)	1124
PdiI	GCCGGC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	430, 619, 1126
PleI	GAGTC	2 cut(s)	871, 906
PpsI	GAGTC	2 cut(s)	871, 906
PshBI	ATTAAT	1 cut(s)	812
Psp6I	CCWGG	1 cut(s)	880
PspGI	CCWGG	1 cut(s)	880
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	841
RsaNI	GTAC	1 cut(s)	840
SaqAI	TTAA	3 cut(s)	492, 812, 858
SatI	GCNGC	3 cut(s)	429, 618, 1125
Sau3AI	GATC	3 cut(s)	34, 324, 439
ScaI	AGTACT	1 cut(s)	841
SchI	GAGTC	2 cut(s)	871, 907
ScrFI	CCNGG	2 cut(s)	589, 882
SduI	GDGCHC	1 cut(s)	730
SfaNI	GCATC	2 cut(s)	438, 699
SphI	GCATGC	1 cut(s)	1124
Sse9I	AATT	5 cut(s)	488, 721, 855, 908, 920
SspI	AATATT	1 cut(s)	1024
StyD4I	CCNGG	2 cut(s)	587, 880
TaaI	ACNGT	4 cut(s)	646, 969, 997, 1088
TaiI	ACGT	2 cut(s)	303, 534
TaqI	TCGA	2 cut(s)	63, 442
TasI	AATT	5 cut(s)	488, 721, 855, 908, 920
TatI	WGTACW	1 cut(s)	839
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	3 cut(s)	492, 812, 858
Tru9I	TTAA	3 cut(s)	492, 812, 858
TscAI	CASTG	3 cut(s)	80, 802, 1093
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	3 cut(s)	428, 617, 1124
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	5 cut(s)	207, 248, 296, 725, 957
TspGWI	ACGGA	2 cut(s)	542, 710
TspRI	CASTG	3 cut(s)	80, 802, 1093
VspI	ATTAAT	1 cut(s)	812
XapI	RAATTY	1 cut(s)	488
XceI	RCATGY	1 cut(s)	1124
ZrmI	AGTACT	1 cut(s)	841
Zsp2I	ATGCAT	2 cut(s)	453, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.