Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 2 cut(s) | 115, 127 |
| AluBI | AGCT | 3 cut(s) | 39, 56, 145 |
| AluI | AGCT | 3 cut(s) | 39, 56, 145 |
| AoxI | GGCC | 1 cut(s) | 213 |
| ApeKI | GCWGC | 2 cut(s) | 39, 245 |
| AspS9I | GGNCC | 1 cut(s) | 214 |
| AsuHPI | GGTGA | 1 cut(s) | 310 |
| BbsI | GAAGAC | 1 cut(s) | 122 |
| BbvI | GCAGC | 2 cut(s) | 26, 232 |
| BccI | CCATC | 1 cut(s) | 376 |
| BfaI | CTAG | 1 cut(s) | 344 |
| BisI | GCNGC | 2 cut(s) | 40, 246 |
| BlsI | GCNGC | 2 cut(s) | 41, 247 |
| BmgT120I | GGNCC | 1 cut(s) | 214 |
| BpiI | GAAGAC | 1 cut(s) | 122 |
| BsaJI | CCNNGG | 1 cut(s) | 284 |
| BseDI | CCNNGG | 1 cut(s) | 284 |
| BseGI | GGATG | 1 cut(s) | 82 |
| BseXI | GCAGC | 2 cut(s) | 26, 232 |
| BsgI | GTGCAG | 1 cut(s) | 380 |
| Bsh1285I | CGRYCG | 2 cut(s) | 296, 328 |
| BshFI | GGCC | 1 cut(s) | 215 |
| BsiEI | CGRYCG | 2 cut(s) | 296, 328 |
| BsnI | GGCC | 1 cut(s) | 215 |
| Bsp143I | GATC | 2 cut(s) | 293, 325 |
| BspANI | GGCC | 1 cut(s) | 215 |
| BspQI | GCTCTTC | 2 cut(s) | 135, 383 |
| BssECI | CCNNGG | 1 cut(s) | 284 |
| BssMI | GATC | 2 cut(s) | 293, 325 |
| BssT1I | CCWWGG | 1 cut(s) | 284 |
| Bst6I | CTCTTC | 3 cut(s) | 135, 204, 383 |
| BstC8I | GCNNGC | 1 cut(s) | 54 |
| BstDEI | CTNAG | 1 cut(s) | 146 |
| BstF5I | GGATG | 1 cut(s) | 82 |
| BstKTI | GATC | 2 cut(s) | 296, 328 |
| BstMBI | GATC | 2 cut(s) | 293, 325 |
| BstMCI | CGRYCG | 2 cut(s) | 296, 328 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 142, 245, 254 |
| BstV1I | GCAGC | 2 cut(s) | 26, 232 |
| BstV2I | GAAGAC | 1 cut(s) | 122 |
| BsuRI | GGCC | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 82 |
| Cac8I | GCNNGC | 1 cut(s) | 54 |
| Cfr13I | GGNCC | 1 cut(s) | 214 |
| CviAII | CATG | 1 cut(s) | 260 |
| CviJI | RGCY | 4 cut(s) | 39, 56, 145, 215 |
| CviKI_1 | RGCY | 4 cut(s) | 39, 56, 145, 215 |
| DdeI | CTNAG | 1 cut(s) | 146 |
| DpnI | GATC | 2 cut(s) | 295, 327 |
| DpnII | GATC | 2 cut(s) | 293, 325 |
| Eam1104I | CTCTTC | 3 cut(s) | 135, 204, 383 |
| EarI | CTCTTC | 3 cut(s) | 135, 204, 383 |
| Eco130I | CCWWGG | 1 cut(s) | 284 |
| EcoO109I | RGGNCCY | 1 cut(s) | 214 |
| EcoT14I | CCWWGG | 1 cut(s) | 284 |
| ErhI | CCWWGG | 1 cut(s) | 284 |
| FaeI | CATG | 1 cut(s) | 263 |
| FaiI | YATR | 4 cut(s) | 17, 60, 62, 261 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 129, 161 |
| FatI | CATG | 1 cut(s) | 259 |
| Fnu4HI | GCNGC | 2 cut(s) | 40, 246 |
| FokI | GGATG | 1 cut(s) | 89 |
| Fsp4HI | GCNGC | 2 cut(s) | 40, 246 |
| FspBI | CTAG | 1 cut(s) | 344 |
| GluI | GCNGC | 2 cut(s) | 40, 246 |
| HaeIII | GGCC | 1 cut(s) | 215 |
| Hin1II | CATG | 1 cut(s) | 263 |
| HindIII | AAGCTT | 1 cut(s) | 54 |
| HinfI | GANTC | 1 cut(s) | 309 |
| HphI | GGTGA | 1 cut(s) | 310 |
| Hpy188III | TCNNGA | 1 cut(s) | 34 |
| HpyAV | CCTTC | 1 cut(s) | 341 |
| HpyCH4V | TGCA | 4 cut(s) | 42, 168, 190, 361 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 142, 245, 254 |
| HpyF3I | CTNAG | 1 cut(s) | 146 |
| Hsp92II | CATG | 1 cut(s) | 263 |
| Kzo9I | GATC | 2 cut(s) | 293, 325 |
| LguI | GCTCTTC | 2 cut(s) | 135, 383 |
| LmnI | GCTCC | 2 cut(s) | 244, 274 |
| LpnPI | CCDG | 3 cut(s) | 230, 255, 267 |
| Lsp1109I | GCAGC | 2 cut(s) | 26, 232 |
| MaeI | CTAG | 1 cut(s) | 344 |
| MalI | GATC | 2 cut(s) | 295, 327 |
| MboI | GATC | 2 cut(s) | 293, 325 |
| MboII | GAAGA | 8 cut(s) | 98, 127, 139, 142, 152, 221, 385, 397 |
| MluCI | AATT | 1 cut(s) | 394 |
| MmeI | TCCRAC | 1 cut(s) | 296 |
| MnlI | CCTC | 5 cut(s) | 39, 205, 233, 349, 375 |
| MseI | TTAA | 1 cut(s) | 397 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 142, 245, 254 |
| NdeII | GATC | 2 cut(s) | 293, 325 |
| NlaIII | CATG | 1 cut(s) | 263 |
| PciSI | GCTCTTC | 2 cut(s) | 135, 383 |
| PfeI | GAWTC | 1 cut(s) | 309 |
| PkrI | GCNGC | 2 cut(s) | 41, 247 |
| Ple19I | CGATCG | 2 cut(s) | 296, 328 |
| PspPI | GGNCC | 1 cut(s) | 214 |
| PvuI | CGATCG | 2 cut(s) | 296, 328 |
| SapI | GCTCTTC | 2 cut(s) | 135, 383 |
| SaqAI | TTAA | 1 cut(s) | 397 |
| SatI | GCNGC | 2 cut(s) | 40, 246 |
| Sau3AI | GATC | 2 cut(s) | 293, 325 |
| Sau96I | GGNCC | 1 cut(s) | 214 |
| SetI | ASST | 5 cut(s) | 41, 58, 147, 352, 360 |
| Sse9I | AATT | 1 cut(s) | 394 |
| SspMI | CTAG | 1 cut(s) | 344 |
| StyI | CCWWGG | 1 cut(s) | 284 |
| TaqI | TCGA | 3 cut(s) | 33, 328, 371 |
| TasI | AATT | 1 cut(s) | 394 |
| TfiI | GAWTC | 1 cut(s) | 309 |
| Tru1I | TTAA | 1 cut(s) | 397 |
| Tru9I | TTAA | 1 cut(s) | 397 |
| TseI | GCWGC | 2 cut(s) | 39, 245 |
| TspDTI | ATGAA | 3 cut(s) | 93, 222, 294 |
| XspI | CTAG | 1 cut(s) | 344 |