Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

7348984 .. 7349768

Gene Structure 785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07821.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTGTACTCCGGAAGAACTTGAACAGTGGATAAAGCAGATGGAAAAGGAGGCCCTAATATATAACGGAATTGAGTATCAAAGCAGTGAAGACAAAGACGTTAACACTGTGGAGCACCGGCAGGATAGGTCTGCAATAGACACCTGCACCTCCTGCAAGAGGAATTTTGATTACATAGAACAACTATGTGAAGAAAAAGAAGAAGTGACCAAAAAATATAAGCAGTTGAAGGCAAAGCTGAAGAAGAAGGAAGAACATATTAAAAAGTTAAGGATAAAGTGCAGACAACTATGGCTACTGCAAAAGGGTTTAGAGGGTGCTAGGAGTGAGAAAGACACTGAGGGTGAAAAAGGTGGAGCTGGGAGTGAAAAAATTGTCGCTATAGAAGCTGCAGAGAGTGTGGCTAAGGTTGTTACTGAGAAGGAAATTTGTCGTTCCAAATGTGCAACTACACAAGAAGCTGAGAAGGGTGCAGCTGCAAAAGATGACAAAGTAGCTGAAACTACCACAACAAAGGCCACAGAAAAGGGCAAAGTTGAAAATGAAGCTCAACCTGCTACTTCCCCAAGGACGCGTTCAATAGTTAAGAGGATCAAAGGAAGGAGGGACCGAAAAGAGAAGAAAATGGAAGATTACGAGGTGCAGAGACTCTTGAAAAAACTAAGGAATGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

226

Amino Acids

25.83

Weight (kDa)

9.05

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	152
Acc36I	ACCTGC	2 cut(s)	152, 562
AccII	CGCG	1 cut(s)	574
AccIII	TCCGGA	1 cut(s)	10
AclWI	GGATC	1 cut(s)	599
AcsI	RAATTY	2 cut(s)	163, 426
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	159
AflIII	ACRYGT	1 cut(s)	572
AgsI	TTSAA	5 cut(s)	23, 229, 539, 579, 655
AjuI	GAANNNNNNNTTGG	2 cut(s)	559, 591
AluBI	AGCT	7 cut(s)	238, 359, 389, 461, 476, 497, 548
AluI	AGCT	7 cut(s)	238, 359, 389, 461, 476, 497, 548
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	640
AlwI	GGATC	1 cut(s)	599
Aor13HI	TCCGGA	1 cut(s)	10
AoxI	GGCC	2 cut(s)	51, 516
ApeKI	GCWGC	3 cut(s)	389, 473, 476
ApoI	RAATTY	2 cut(s)	163, 426
AspS9I	GGNCC	2 cut(s)	52, 607
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	376, 463, 485
BccI	CCATC	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	2 cut(s)	381, 390
BfuAI	ACCTGC	2 cut(s)	152, 562
BisI	GCNGC	3 cut(s)	390, 474, 477
BlsI	GCNGC	3 cut(s)	391, 475, 478
Bme18I	GGWCC	1 cut(s)	607
BmgT120I	GGNCC	2 cut(s)	52, 607
BmiI	GGNNCC	1 cut(s)	608
BpiI	GAAGAC	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	566
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse118I	RCCGGY	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	566
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMII	CTCAG	3 cut(s)	330, 408, 453
BseXI	GCAGC	3 cut(s)	376, 463, 485
BseYI	CCCAGC	1 cut(s)	359
BsgI	GTGCAG	4 cut(s)	130, 301, 492, 662
Bsh1236I	CGCG	1 cut(s)	574
BshFI	GGCC	2 cut(s)	53, 518
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	11, 118
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	640
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	2 cut(s)	53, 518
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	591
BspANI	GGCC	2 cut(s)	53, 518
BspCNI	CTCAG	3 cut(s)	331, 409, 454
BspEI	TCCGGA	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	574
BspLI	GGNNCC	1 cut(s)	608
BspMAI	CTGCAG	1 cut(s)	394
BspMI	ACCTGC	2 cut(s)	152, 562
BspPI	GGATC	1 cut(s)	599
BsrFI	RCCGGY	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	1 cut(s)	591
BssT1I	CCWWGG	1 cut(s)	566
Bst4CI	ACNGT	2 cut(s)	27, 109
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstDEI	CTNAG	5 cut(s)	339, 405, 417, 462, 662
BstENI	CCTNNNNNAGG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	574
BstKTI	GATC	1 cut(s)	594
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	1 cut(s)	591
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 386, 554
BstSFI	CTRYAG	2 cut(s)	381, 390
BstUI	CGCG	1 cut(s)	574
BstV1I	GCAGC	3 cut(s)	376, 463, 485
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	53, 518
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	4 cut(s)	32, 91, 105, 336
BveI	ACCTGC	2 cut(s)	152, 562
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	52, 607
CseI	GACGC	1 cut(s)	580
Csp6I	GTAC	1 cut(s)	6
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	5 cut(s)	339, 405, 417, 462, 662
DpnI	GATC	1 cut(s)	593
DpnII	GATC	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	157
EcoO109I	RGGNCCY	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	566
FaiI	YATR	8 cut(s)	61, 63, 176, 187, 219, 258, 292, 383
FaqI	GGGAC	1 cut(s)	620
Fnu4HI	GCNGC	3 cut(s)	390, 474, 477
Fsp4HI	GCNGC	3 cut(s)	390, 474, 477
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	3 cut(s)	390, 474, 477
GsaI	CCCAGC	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	53, 518
HapII	CCGG	2 cut(s)	11, 118
HgaI	GACGC	1 cut(s)	580
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	648
HpaI	GTTAAC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	11, 118
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	6, 103
Hpy188III	TCNNGA	2 cut(s)	11, 652
Hpy8I	GTNNAC	2 cut(s)	6, 103
HpyAV	CCTTC	5 cut(s)	223, 241, 415, 460, 594
HpyCH4III	ACNGT	2 cut(s)	27, 109
HpyCH4IV	ACGT	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 386, 554
HpyF3I	CTNAG	5 cut(s)	339, 405, 417, 462, 662
HpySE526I	ACGT	1 cut(s)	99
Kpn2I	TCCGGA	1 cut(s)	10
KspAI	GTTAAC	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	591
LmnI	GCTCC	2 cut(s)	112, 356
LpnPI	CCDG	7 cut(s)	24, 107, 131, 157, 166, 345, 567
Lsp1109I	GCAGC	3 cut(s)	376, 463, 485
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	205, 412
MalI	GATC	1 cut(s)	593
MboI	GATC	1 cut(s)	591
MboII	GAAGA	9 cut(s)	26, 101, 203, 212, 253, 256, 263, 631, 641
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	4 cut(s)	69, 163, 372, 426
MluI	ACGCGT	1 cut(s)	572
MlyI	GAGTC	1 cut(s)	642
MnlI	CCTC	8 cut(s)	43, 153, 160, 307, 334, 582, 597, 631
MroI	TCCGGA	1 cut(s)	10
MseI	TTAA	4 cut(s)	102, 261, 269, 585
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	2 cut(s)	11, 118
MvnI	CGCG	1 cut(s)	574
MwoI	GCNNNNNNNGC	3 cut(s)	153, 386, 554
NdeII	GATC	1 cut(s)	591
NlaIV	GGNNCC	1 cut(s)	608
NmuCI	GTSAC	1 cut(s)	205
PaqCI	CACCTGC	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	391, 475, 478
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
PspFI	CCCAGC	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	608
PspPI	GGNCC	2 cut(s)	52, 607
PstI	CTGCAG	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SaqAI	TTAA	4 cut(s)	102, 261, 269, 585
SatI	GCNGC	3 cut(s)	390, 474, 477
Sau3AI	GATC	1 cut(s)	591
Sau96I	GGNCC	2 cut(s)	52, 607
SchI	GAGTC	1 cut(s)	642
SduI	GDGCHC	1 cut(s)	117
SfcI	CTRYAG	2 cut(s)	381, 390
SinI	GGWCC	1 cut(s)	607
Sse9I	AATT	4 cut(s)	69, 163, 372, 426
SspMI	CTAG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	2 cut(s)	27, 109
TaiI	ACGT	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	624
TasI	AATT	4 cut(s)	69, 163, 372, 426
TatI	WGTACW	1 cut(s)	5
Tru1I	TTAA	4 cut(s)	102, 261, 269, 585
Tru9I	TTAA	4 cut(s)	102, 261, 269, 585
TscAI	CASTG	4 cut(s)	32, 91, 112, 343
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	3 cut(s)	389, 473, 476
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	558
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	4 cut(s)	32, 91, 112, 343
VpaK11BI	GGWCC	1 cut(s)	607
XagI	CCTNNNNNAGG	1 cut(s)	157
XapI	RAATTY	2 cut(s)	163, 426
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.