Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

20404425 .. 20406114

Gene Structure 1690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017721

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGACAAAATTGCTGCTACTGCATTTGTTCATCACGCTACTGTTTGCAAGCTCGGGGTCAACCTTAGGATGGAGCTTCGTGAAATGCATCACGGATATTGAGACAATGAAGAGATATAATTGGGCACGAGCTGTTAGAGACTATTTGCTATTGTGTTTGCAAGCTGCTACAAAGGGAAAAGCAAGGCAAATCAGTGGATGTGTAACATTAATCCCGTATTGGATATCCGAGAGGAGTACTATGCTTGTTGAAATTAAAGGCAGAGAAGCAATGACTCCAGGGTGCGTCAAGTGGAGTCTCCCTCAATTTACAAAAGAATTGCAGAAAATGCAAGTTGATGAAATAAAGATTGATAATGCAGTTGCCGACAACTATAGAAGCAAACATGGCAAGGAAAACAGCGACGATGACTTTGAGAACCCTCCATCAAAGCATGCTGCTACTGCACAAGCAAAGGGGCAGAAAAGACAAAGAGAAGAAAAGAAGGCCACAGTAGCTGCCAAAAAACTAGCCAAAAAGCGGGTGGCAGAAAAGAGAGCAAAAAGTAAAGAAAATAAGATCTCGAATGAGGCCAATGATGTTGAAAGGAACAAAAAAGCTGCTACTGAGGATCTAACCCTGAAAAATATTATAGAAGAGATTGTGAATGAAGCTGCAAGGAATGAAAAAGTTGCTACTGAGGCTGATGAAGCTGCAAGGAACAACAAAGCTGCTACTGAGGCTGGTGCAAATATTGCGGATCAAATCTTGAGAAACATTGTCGAAGAGATTGTGAATGAAGAGTACAAGAGCAGGAATGATCCAGCTTGGTTCAAGGAATGGGAAGACTTGTTGCCGAGTGAGTATGACGAATTTGGCTATCCAAGCACTGATGAAGAACAGATCAACACAGTGGAGCATTGGCAAGATGTAGCAATGTTGAAACAAGATATGGAGGGAAGTGCTATCGAGAGCTGCAAGAGGAAGCAAGCTTATATAGAGAGATTGTGGGATGAAAAAGAAGAAGTGTCAAAAAAATACAAAAAGTTGAAGAAAAAGATGAAGAAGAAGCAAGAAGAGATTAGAAAATGGAGAAACAAATGCAAACAACTAATGATGATAGTGCAAAGGATAGAAAAAGATGAAGAGGCCAATGAAGATGCTGCTCCTCCCCCTCCTACTGTTCCTGCTCATGCTACTGCTCCTACAAATGAACCAAGGACACGATCAGCGATAAAGAGAATCAAAGAAAGAACCGATCAGAAAGAGAAGCAACTAGAAGGTTTTGAGGTGCAGAAACCATCGAAGAAACAGAGGAAGAAGAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

437

Amino Acids

50.23

Weight (kDa)

9.15

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	520, 737
AclWI	GGATC	3 cut(s)	618, 747, 794
AcsI	RAATTY	1 cut(s)	851
AfaI	GTAC	2 cut(s)	238, 785
AfiI	CCNNNNNNNGG	2 cut(s)	69, 519
AgsI	TTSAA	5 cut(s)	251, 584, 814, 922, 1030
AjnI	CCWGG	1 cut(s)	277
Alw26I	GTCTC	3 cut(s)	95, 132, 302
AlwI	GGATC	3 cut(s)	618, 747, 794
AlwNI	CAGNNNCTG	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	52
AoxI	GGCC	3 cut(s)	486, 570, 1128
ApoI	RAATTY	1 cut(s)	851
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AseI	ATTAAT	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	52
AxyI	CCTNAGG	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	831
BbvI	GCAGC	9 cut(s)	151, 424, 484, 586, 640, 679, 697, 941, 1129
BccI	CCATC	3 cut(s)	63, 433, 1288
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	3 cut(s)	95, 132, 302
BfaI	CTAG	2 cut(s)	509, 1256
BfmI	CTRYAG	1 cut(s)	373
BglII	AGATCT	1 cut(s)	558
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	2 cut(s)	96, 1129
BpiI	GAAGAC	1 cut(s)	831
BplI	GAGNNNNNCTC	2 cut(s)	286, 318
BpmI	CTGGAG	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	769
BsaJI	CCNNGG	2 cut(s)	278, 1196
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 519
Bse21I	CCTNAGG	1 cut(s)	64
Bse3DI	GCAATG	2 cut(s)	276, 921
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	278, 1196
BseGI	GGATG	3 cut(s)	74, 203, 997
BseLI	CCNNNNNNNGG	2 cut(s)	69, 519
BseMI	GCAATG	2 cut(s)	276, 921
BseMII	CTCAG	3 cut(s)	597, 669, 708
BseRI	GAGGAG	2 cut(s)	247, 1137
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	9 cut(s)	151, 424, 484, 586, 640, 679, 697, 941, 1129
BsgI	GTGCAG	2 cut(s)	429, 1292
BshFI	GGCC	3 cut(s)	488, 572, 1130
BsiHKCI	CYCGRG	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	69, 519
BsmAI	GTCTC	3 cut(s)	95, 132, 302
BsnI	GGCC	3 cut(s)	488, 572, 1130
BsoBI	CYCGRG	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	7 cut(s)	558, 610, 739, 799, 882, 1205, 1237
BspACI	CCGC	2 cut(s)	520, 737
BspANI	GGCC	3 cut(s)	488, 572, 1130
BspCNI	CTCAG	3 cut(s)	598, 670, 709
BspPI	GGATC	3 cut(s)	618, 747, 794
BspQI	GCTCTTC	1 cut(s)	1295
BsrDI	GCAATG	2 cut(s)	276, 921
BssECI	CCNNGG	2 cut(s)	278, 1196
BssMI	GATC	7 cut(s)	558, 610, 739, 799, 882, 1205, 1237
BssSI	CACGAG	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	1196
Bst2BI	CACGAG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	4 cut(s)	42, 493, 892, 1162
Bst6I	CTCTTC	7 cut(s)	104, 630, 759, 774, 1050, 1119, 1295
BstAPI	GCANNNNNTGC	2 cut(s)	328, 734
BstC8I	GCNNGC	4 cut(s)	49, 162, 435, 969
BstDEI	CTNAG	4 cut(s)	64, 606, 678, 717
BstF5I	GGATG	3 cut(s)	74, 203, 997
BstKTI	GATC	7 cut(s)	561, 613, 742, 802, 885, 1208, 1240
BstMAI	GTCTC	3 cut(s)	95, 132, 302
BstMBI	GATC	7 cut(s)	558, 610, 739, 799, 882, 1205, 1237
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	373
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	9 cut(s)	151, 424, 484, 586, 640, 679, 697, 941, 1129
BstV2I	GAAGAC	1 cut(s)	831
BstX2I	RGATCY	2 cut(s)	558, 610
BstYI	RGATCY	2 cut(s)	558, 610
Bsu36I	CCTNAGG	1 cut(s)	64
BsuRI	GGCC	3 cut(s)	488, 572, 1130
BtsCI	GGATG	3 cut(s)	74, 203, 997
BtsIMutI	CAGTG	3 cut(s)	199, 867, 897
Cac8I	GCNNGC	4 cut(s)	49, 162, 435, 969
CaiI	CAGNNNCTG	1 cut(s)	497
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	237, 784
CviAII	CATG	3 cut(s)	386, 434, 1172
CviQI	GTAC	2 cut(s)	237, 784
DdeI	CTNAG	4 cut(s)	64, 606, 678, 717
DpnI	GATC	7 cut(s)	560, 612, 741, 801, 884, 1207, 1239
DpnII	GATC	7 cut(s)	558, 610, 739, 799, 882, 1205, 1237
Eam1104I	CTCTTC	7 cut(s)	104, 630, 759, 774, 1050, 1119, 1295
EarI	CTCTTC	7 cut(s)	104, 630, 759, 774, 1050, 1119, 1295
Eco130I	CCWWGG	1 cut(s)	1196
Eco32I	GATATC	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	277
EcoRV	GATATC	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	1196
EcoT22I	ATGCAT	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	1196
FaeI	CATG	3 cut(s)	389, 437, 1175
FatI	CATG	3 cut(s)	385, 433, 1171
FauI	CCCGC	1 cut(s)	513
FokI	GGATG	3 cut(s)	81, 210, 1004
FspBI	CTAG	2 cut(s)	509, 1256
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	488, 572, 1130
HgaI	GACGC	1 cut(s)	274
Hin1II	CATG	3 cut(s)	389, 437, 1175
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	969
HinfI	GANTC	3 cut(s)	274, 295, 1221
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	2 cut(s)	229, 1242
Hpy188III	TCNNGA	4 cut(s)	79, 562, 748, 949
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	2 cut(s)	478, 1253
HpyCH4III	ACNGT	4 cut(s)	42, 493, 892, 1162
HpyF3I	CTNAG	4 cut(s)	64, 606, 678, 717
Hsp92II	CATG	3 cut(s)	389, 437, 1175
Kzo9I	GATC	7 cut(s)	558, 610, 739, 799, 882, 1205, 1237
LguI	GCTCTTC	1 cut(s)	1295
LmnI	GCTCC	4 cut(s)	72, 895, 1150, 1186
LpnPI	CCDG	7 cut(s)	264, 291, 632, 708, 778, 816, 1179
Lsp1109I	GCAGC	9 cut(s)	151, 424, 484, 586, 640, 679, 697, 941, 1129
LweI	GCATC	2 cut(s)	96, 1129
MaeI	CTAG	2 cut(s)	509, 1256
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	7 cut(s)	560, 612, 741, 801, 884, 1207, 1239
MboI	GATC	7 cut(s)	558, 610, 739, 799, 882, 1205, 1237
MflI	RGATCY	2 cut(s)	558, 610
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	7 cut(s)	8, 118, 252, 305, 317, 851, 1306
MlyI	GAGTC	2 cut(s)	268, 304
Mph1103I	ATGCAT	1 cut(s)	89
MseI	TTAA	3 cut(s)	209, 255, 1309
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
NdeII	GATC	7 cut(s)	558, 610, 739, 799, 882, 1205, 1237
NlaIII	CATG	3 cut(s)	389, 437, 1175
NmeAIII	GCCGAG	1 cut(s)	861
NsiI	ATGCAT	1 cut(s)	89
NspI	RCATGY	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	1295
PfeI	GAWTC	1 cut(s)	1221
PleI	GAGTC	2 cut(s)	268, 303
PpsI	GAGTC	2 cut(s)	268, 303
PshBI	ATTAAT	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	558, 610
RsaI	GTAC	2 cut(s)	238, 785
RsaNI	GTAC	2 cut(s)	237, 784
SapI	GCTCTTC	1 cut(s)	1295
SaqAI	TTAA	3 cut(s)	209, 255, 1309
Sau3AI	GATC	7 cut(s)	558, 610, 739, 799, 882, 1205, 1237
ScaI	AGTACT	1 cut(s)	238
SchI	GAGTC	2 cut(s)	268, 304
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	2 cut(s)	96, 1129
SfcI	CTRYAG	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	748
SmoI	CTYRAG	1 cut(s)	748
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	7 cut(s)	8, 118, 252, 305, 317, 851, 1306
SsiI	CCGC	2 cut(s)	520, 737
SspI	AATATT	2 cut(s)	628, 733
SspMI	CTAG	2 cut(s)	509, 1256
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	1196
TaaI	ACNGT	4 cut(s)	42, 493, 892, 1162
TaqI	TCGA	4 cut(s)	563, 762, 948, 1283
TasI	AATT	7 cut(s)	8, 118, 252, 305, 317, 851, 1306
TatI	WGTACW	2 cut(s)	236, 783
TfiI	GAWTC	1 cut(s)	1221
Tru1I	TTAA	3 cut(s)	209, 255, 1309
Tru9I	TTAA	3 cut(s)	209, 255, 1309
TscAI	CASTG	3 cut(s)	199, 874, 897
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	3 cut(s)	199, 874, 897
VspI	ATTAAT	1 cut(s)	209
XapI	RAATTY	1 cut(s)	851
XceI	RCATGY	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XspI	CTAG	2 cut(s)	509, 1256
ZrmI	AGTACT	1 cut(s)	238
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.