Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

10645782 .. 10648248

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032068

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCCCAAACCCAAATCAGAAACCCTAAAATCTCCAGCGACGGATCCAAAACGACTGCAAGATCTCCGAAGCAGTAGCACTCAGCTTGAATCTGGCTCCAATGGAGACTCACATTTCGAGTGGATTCAGTGTTTTGTGGTCCAATCAGTGCATTACTACTGTGGAATTGCATTTGAATGCCTGATTGTGAGAAGAAAAACTCTGGCATGTAGGAAAACATTTCCAAGCACAAGAGCAAGATTGAAGAGACAAAAGCAGAAAGAGGTGGAACAAGACAGGGAAGAAGAGGAAAATGAAGAAAATGAGGAAGAAGATGAAGATGAACAAGACGGGGGAGAAGAGGATAATGAAGAAGAGAAGGAGGAAGAAGAAGAGAACGATGGAGCAAGGAACAGAGGCAAAGGTCAGAAACAATCATATTGCCAATACAGGTGCAACATGATTGCCTTCCACGACGTGCTTCATAAAGTGTATGAGCAGCTCAATCGTGAAGAAAAGATGGGATTGAAAGCCGAGTTGAAGAAGACGCCATTTTGGAACTTGATTGAAGCTTATGATAAGGGATTGATGACTAAGAACACAGCTGCAAAATCAGATCGAGAGATGCATAGGTTAGTGCAATGCTATAAGCTGGCTTTGAAGAAATTTAAGTTTGGAAACAAGTTGGCAGAAATAAGCGTATCGGACGTGCAATACATTTTGGGTTTGCCAAACCGAAAATCAGCTATCACGGTGCCAAACCCAATAGATGATCCTAAGAAGCCGACTGATCAACCTCTTGTTCGAAGGTTCTTTCCAAATGACCAAAGGATCAAAAAAGCAAGAATCATGAGCTATACTGATGAGCAGTTAAGGGAAAAAGCTCCGGGGTGGATAGAGAACATGACAAAGTTGCTGCTACTGCATTTGTTCATCACGCTACTGTTTGCAAGCTCGGGGTCAACCTTAAGATGGAGCTTCGTGAAATTCATCATGGATATTGAGACAATGAAGAGATATAATTGGGCACGAGCTGTTAGAGACTATTTACTATTGTGTTTGCAAGCTGCTACAAAGGGAAAAGCAAGGCAAATCAGTGGATGTGTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

364

Amino Acids

42.32

Weight (kDa)

8.42

Isoelectric Point (pI)

60.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	733
AclWI	GGATC	4 cut(s)	38, 51, 746, 818
AcsI	RAATTY	2 cut(s)	644, 965
AcyI	GRCGYC	1 cut(s)	527
AdeI	CACNNNGTG	1 cut(s)	457
AfiI	CCNNNNNNNGG	1 cut(s)	951
AflII	CTTAAG	1 cut(s)	946
AgsI	TTSAA	7 cut(s)	89, 176, 244, 508, 520, 548, 640
AjiI	CACGTC	2 cut(s)	457, 688
Alw26I	GTCTC	4 cut(s)	99, 241, 977, 1014
AlwI	GGATC	4 cut(s)	38, 51, 746, 818
Ama87I	CYCGRG	1 cut(s)	934
ApeKI	GCWGC	4 cut(s)	478, 584, 895, 1046
ApoI	RAATTY	2 cut(s)	644, 965
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	867
AsuII	TTCGAA	1 cut(s)	784
AvaI	CYCGRG	1 cut(s)	934
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	1009
BamHI	GGATCC	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	733
BauI	CACGAG	1 cut(s)	1008
BbsI	GAAGAC	1 cut(s)	530
BbvI	GCAGC	4 cut(s)	490, 571, 882, 1033
BccI	CCATC	3 cut(s)	374, 493, 945
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BclI	TGATCA	1 cut(s)	769
BcnI	CCSGG	1 cut(s)	867
BcoDI	GTCTC	4 cut(s)	99, 241, 977, 1014
BfrI	CTTAAG	1 cut(s)	946
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	4 cut(s)	479, 585, 896, 1047
BlsI	GCNGC	4 cut(s)	480, 586, 897, 1048
Bme1390I	CCNGG	1 cut(s)	867
Bme18I	GGWCC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	934
BmgBI	CACGTC	2 cut(s)	457, 688
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	3 cut(s)	45, 97, 735
BmrFI	CCNGG	1 cut(s)	867
BmsI	GCATC	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	784
BpuMI	CCSGG	1 cut(s)	867
BsaHI	GRCGYC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	866
Bsc4I	CCNNNNNNNGG	1 cut(s)	951
Bse3DI	GCAATG	1 cut(s)	626
BseDI	CCNNGG	1 cut(s)	866
BseGI	GGATG	1 cut(s)	1085
BseLI	CCNNNNNNNGG	1 cut(s)	951
BseMI	GCAATG	1 cut(s)	626
BseMII	CTCAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	1009
BseXI	GCAGC	4 cut(s)	490, 571, 882, 1033
BshNI	GGYRCC	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	934
BsiSI	CCGG	1 cut(s)	866
BslI	CCNNNNNNNGG	1 cut(s)	951
BsmAI	GTCTC	4 cut(s)	99, 241, 977, 1014
BsmI	GAATGC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	934
Bsp119I	TTCGAA	1 cut(s)	784
Bsp1286I	GDGCHC	1 cut(s)	1009
Bsp143I	GATC	6 cut(s)	43, 61, 595, 751, 769, 810
BspCNI	CTCAG	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	3 cut(s)	45, 97, 735
BspPI	GGATC	4 cut(s)	38, 51, 746, 818
BspT104I	TTCGAA	1 cut(s)	784
BspT107I	GGYRCC	1 cut(s)	733
BspTI	CTTAAG	1 cut(s)	946
BsrDI	GCAATG	1 cut(s)	626
BssECI	CCNNGG	1 cut(s)	866
BssMI	GATC	6 cut(s)	43, 61, 595, 751, 769, 810
BssNI	GRCGYC	1 cut(s)	527
BssSI	CACGAG	1 cut(s)	1008
Bst2BI	CACGAG	1 cut(s)	1008
Bst4CI	ACNGT	3 cut(s)	161, 733, 924
Bst6I	CTCTTC	6 cut(s)	239, 279, 333, 348, 366, 986
BstACI	GRCGYC	1 cut(s)	527
BstAFI	CTTAAG	1 cut(s)	946
BstBI	TTCGAA	1 cut(s)	784
BstC8I	GCNNGC	3 cut(s)	633, 931, 1044
BstDEI	CTNAG	3 cut(s)	81, 573, 756
BstF5I	GGATG	1 cut(s)	1085
BstKTI	GATC	6 cut(s)	46, 64, 598, 754, 772, 813
BstMAI	GTCTC	4 cut(s)	99, 241, 977, 1014
BstMBI	GATC	6 cut(s)	43, 61, 595, 751, 769, 810
BstMWI	GCNNNNNNNGC	1 cut(s)	901
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	865
BstSLI	GKGCMC	1 cut(s)	1009
BstV1I	GCAGC	4 cut(s)	490, 571, 882, 1033
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	2 cut(s)	43, 61
BstYI	RGATCY	2 cut(s)	43, 61
BtrI	CACGTC	2 cut(s)	457, 688
BtsCI	GGATG	1 cut(s)	1085
BtsIMutI	CAGTG	3 cut(s)	134, 153, 1081
Cac8I	GCNNGC	3 cut(s)	633, 931, 1044
CciI	TCATGA	1 cut(s)	828
Cfr13I	GGNCC	1 cut(s)	139
CseI	GACGC	1 cut(s)	535
CviAII	CATG	6 cut(s)	207, 439, 829, 883, 973, 1089
DdeI	CTNAG	3 cut(s)	81, 573, 756
DpnI	GATC	6 cut(s)	45, 63, 597, 753, 771, 812
DpnII	GATC	6 cut(s)	43, 61, 595, 751, 769, 810
DraIII	CACNNNGTG	1 cut(s)	457
Eam1104I	CTCTTC	6 cut(s)	239, 279, 333, 348, 366, 986
EarI	CTCTTC	6 cut(s)	239, 279, 333, 348, 366, 986
Eco47I	GGWCC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	934
EcoT22I	ATGCAT	1 cut(s)	609
FaeI	CATG	6 cut(s)	210, 442, 832, 886, 976, 1092
FatI	CATG	6 cut(s)	206, 438, 828, 882, 972, 1088
FbaI	TGATCA	1 cut(s)	769
Fnu4HI	GCNGC	4 cut(s)	479, 585, 896, 1047
Fsp4HI	GCNGC	4 cut(s)	479, 585, 896, 1047
GluI	GCNGC	4 cut(s)	479, 585, 896, 1047
GsuI	CTGGAG	1 cut(s)	18
HapII	CCGG	1 cut(s)	866
HgaI	GACGC	1 cut(s)	535
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	6 cut(s)	210, 442, 832, 886, 976, 1092
HincII	GTYRAC	1 cut(s)	942
HindII	GTYRAC	1 cut(s)	942
HindIII	AAGCTT	1 cut(s)	549
HinfI	GANTC	4 cut(s)	89, 107, 124, 825
HpaII	CCGG	1 cut(s)	866
Hpy166II	GTNNAC	1 cut(s)	942
Hpy188I	TCNGA	5 cut(s)	19, 68, 408, 595, 685
Hpy188III	TCNNGA	4 cut(s)	488, 599, 829, 961
Hpy8I	GTNNAC	1 cut(s)	942
Hpy99I	CGWCG	2 cut(s)	43, 458
HpyAV	CCTTC	3 cut(s)	352, 457, 780
HpyCH4III	ACNGT	3 cut(s)	161, 733, 924
HpyCH4IV	ACGT	2 cut(s)	456, 687
HpyF10VI	GCNNNNNNNGC	1 cut(s)	901
HpyF3I	CTNAG	3 cut(s)	81, 573, 756
HpySE526I	ACGT	2 cut(s)	456, 687
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	6 cut(s)	210, 442, 832, 886, 976, 1092
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	6 cut(s)	43, 61, 595, 751, 769, 810
LmnI	GCTCC	4 cut(s)	101, 383, 868, 954
LpnPI	CCDG	8 cut(s)	48, 78, 188, 194, 262, 415, 617, 879
Lsp1109I	GCAGC	4 cut(s)	490, 571, 882, 1033
LweI	GCATC	1 cut(s)	594
MaeII	ACGT	2 cut(s)	456, 687
MaeIII	GTNAC	1 cut(s)	1084
MalI	GATC	6 cut(s)	45, 63, 597, 753, 771, 812
MboI	GATC	6 cut(s)	43, 61, 595, 751, 769, 810
MflI	RGATCY	2 cut(s)	43, 61
MhlI	GDGCHC	1 cut(s)	1009
MluCI	AATT	4 cut(s)	165, 644, 965, 1000
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	7 cut(s)	256, 280, 298, 334, 355, 389, 786
Mph1103I	ATGCAT	1 cut(s)	609
MseI	TTAA	3 cut(s)	648, 851, 947
MslI	CAYNNNNRTG	1 cut(s)	175
MspA1I	CMGCKG	1 cut(s)	584
MspCI	CTTAAG	1 cut(s)	946
MspI	CCGG	1 cut(s)	866
MspR9I	CCNGG	1 cut(s)	867
Mva1269I	GAATGC	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	901
NciI	CCSGG	1 cut(s)	867
NdeII	GATC	6 cut(s)	43, 61, 595, 751, 769, 810
NlaIII	CATG	6 cut(s)	210, 442, 832, 886, 976, 1092
NlaIV	GGNNCC	3 cut(s)	45, 97, 735
NmeAIII	GCCGAG	1 cut(s)	538
NsiI	ATGCAT	1 cut(s)	609
NspI	RCATGY	1 cut(s)	210
NspV	TTCGAA	1 cut(s)	784
PagI	TCATGA	1 cut(s)	828
PctI	GAATGC	1 cut(s)	182
PfeI	GAWTC	3 cut(s)	89, 124, 825
PkrI	GCNGC	4 cut(s)	480, 586, 897, 1048
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PspN4I	GGNNCC	3 cut(s)	45, 97, 735
PspPI	GGNCC	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	43, 61
PvuII	CAGCTG	1 cut(s)	584
RseI	CAYNNNNRTG	1 cut(s)	175
SaqAI	TTAA	3 cut(s)	648, 851, 947
SatI	GCNGC	4 cut(s)	479, 585, 896, 1047
Sau3AI	GATC	6 cut(s)	43, 61, 595, 751, 769, 810
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	867
SduI	GDGCHC	1 cut(s)	1009
SfaNI	GCATC	1 cut(s)	594
SfuI	TTCGAA	1 cut(s)	784
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	946
SmoI	CTYRAG	1 cut(s)	946
Sse9I	AATT	4 cut(s)	165, 644, 965, 1000
StyD4I	CCNGG	1 cut(s)	865
TaaI	ACNGT	3 cut(s)	161, 733, 924
TaiI	ACGT	2 cut(s)	459, 690
TaqI	TCGA	3 cut(s)	117, 598, 784
TasI	AATT	4 cut(s)	165, 644, 965, 1000
TfiI	GAWTC	3 cut(s)	89, 124, 825
Tru1I	TTAA	3 cut(s)	648, 851, 947
Tru9I	TTAA	3 cut(s)	648, 851, 947
TscAI	CASTG	3 cut(s)	134, 153, 1081
TseI	GCWGC	4 cut(s)	478, 584, 895, 1046
TspDTI	ATGAA	8 cut(s)	309, 330, 336, 363, 452, 901, 958, 1004
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	3 cut(s)	134, 153, 1081
Vha464I	CTTAAG	1 cut(s)	946
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	2 cut(s)	644, 965
XceI	RCATGY	1 cut(s)	210
Zsp2I	ATGCAT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.