Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Reverse (-)

56328119 .. 56330773

Gene Structure 2655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014689

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGGATTGAAAGCCAAGTTGGAGAAGACGCCATTTTGGAACTTGATTGAAGCTTATGATAAGGGATTGATGACTAAGAACACAGCTACAAAATCAGATCGAGAGACGCATAGGTTAGTGCAATGCTACAAGCCGGCTTTGAAGAAATTTAAGTTTGGAAACAAGTTGGCAGAAATAAGTGTATCGGACGTGCAATACATTTTGGGTTTGCCAAACCAAAAATCAGCTATCACGTTGCCAAACCCAATAGATGATCCTAAGAAGCCGACTGATCATCCTCTTGTTCGAAGGTTCTTTCCAAATGACCAAAGGATAAAAAAAGCAAGAATCATGAGCTGTATTGATGAGCAGTTAAGGGAAAAAGCTCCGGGTTGGATAGAGAACATGACAAAGTTGTTGCTACAGCATTTGTTCATCATGCTACTGTTTGCAAGCTCGGGGTCAACCTTAGGATGGAGCTTCGTGAAATGCATCACGGATTTTGAGACAATGAAGAGATATAATTGGGCACAAGCTGTTAGAGACTATTTGCTATTGTGTTTGCAAGCTGCTACAAAGGGAAAAGCAAGGCAAATCAGCGGATGTGTAACATTAATCCCGGTGGATATGAACAGCATGAATTTTGCGAAAAAGATGGACGAGAATAAAGGAGAGGAAGGGATGCAAACAAAAGCCACAAGTGGAGTAAATGTCAATGATATGGATTCGGGTGCAACTGAGGAAGAAGAGGATGCTGCGGATGCTGCTACTGAGGCCGATGAAGCTGCAAGGAATGACAAAGCTGCTACTGAGGCTGGTGCAAATATTACGGATCAAATCTTGAAAAACATTGTAGAAGAGATTGTGAATGAAGAGTACAAGAGCAGGAATGATCCGGCTTGGTTCAAGGAATGGGAAGACTTGTTGCAGAGTAAGTATGACGAATTTGGCTATCCAAGCACTGATGAAGAACAGATCAACACAGTGGAGCATTGGCAAGATGTAGCAATGTTGAAACAAGATATGGCGGGAAGTGCTATCGAGAGCTGCAAGAGGAAGCAAGCTTATATAGAGAGATTGTGGGATGAAAGAAGAATGCAAAGGATAGAAAAAGATGAAGAGGCCAATGAAGATGCTATTGCTGCTTCTCCTGCTGTTCCTGCTCATGCTACTGCTCCTACAAATGAACCAAGGACACGATCAGCGATAAAGAGAATCAAAGAAAGAACCGATCGGAAAGAGAAGCAACTACAAGGTTTTGAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

416

Amino Acids

47.24

Weight (kDa)

5.59

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	579, 737, 1007
AclWI	GGATC	3 cut(s)	248, 819, 866
AcsI	RAATTY	3 cut(s)	146, 619, 923
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	857
AfiI	CCNNNNNNNGG	1 cut(s)	453
AgsI	TTSAA	6 cut(s)	10, 50, 142, 823, 886, 994
AjiI	CACGTC	1 cut(s)	190
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
Alw26I	GTCTC	3 cut(s)	98, 479, 516
AlwI	GGATC	3 cut(s)	248, 819, 866
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	2 cut(s)	753, 1101
ApeKI	GCWGC	7 cut(s)	548, 734, 743, 764, 782, 1026, 1121
ApoI	RAATTY	3 cut(s)	146, 619, 923
AseI	ATTAAT	1 cut(s)	593
AsuC2I	CCSGG	2 cut(s)	369, 599
AsuII	TTCGAA	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	448
BaeGI	GKGCMC	1 cut(s)	511
BbsI	GAAGAC	2 cut(s)	32, 903
BbvI	GCAGC	7 cut(s)	535, 721, 730, 751, 769, 1013, 1108
BccI	CCATC	2 cut(s)	447, 628
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	2 cut(s)	369, 599
BcoDI	GTCTC	3 cut(s)	98, 479, 516
BfmI	CTRYAG	1 cut(s)	401
BisI	GCNGC	7 cut(s)	549, 735, 744, 765, 783, 1027, 1122
BlsI	GCNGC	7 cut(s)	550, 736, 745, 766, 784, 1028, 1123
Bme1390I	CCNGG	2 cut(s)	369, 599
BmeT110I	CYCGRG	1 cut(s)	436
BmgBI	CACGTC	1 cut(s)	190
BmrFI	CCNGG	2 cut(s)	369, 599
BmsI	GCATC	5 cut(s)	480, 651, 721, 730, 1102
BpiI	GAAGAC	2 cut(s)	32, 903
Bpu14I	TTCGAA	1 cut(s)	286
BpuMI	CCSGG	2 cut(s)	369, 599
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	1169
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse118I	RCCGGY	1 cut(s)	133
Bse21I	CCTNAGG	1 cut(s)	448
Bse3DI	GCAATG	2 cut(s)	128, 993
BseDI	CCNNGG	1 cut(s)	1169
BseGI	GGATG	7 cut(s)	274, 458, 587, 666, 736, 745, 1069
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseMI	GCAATG	2 cut(s)	128, 993
BseMII	CTCAG	3 cut(s)	708, 741, 780
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	7 cut(s)	535, 721, 730, 751, 769, 1013, 1108
Bsh1285I	CGRYCG	1 cut(s)	1213
BshFI	GGCC	2 cut(s)	755, 1103
BsiEI	CGRYCG	1 cut(s)	1213
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	4 cut(s)	134, 368, 599, 875
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmAI	GTCTC	3 cut(s)	98, 479, 516
BsmBI	CGTCTC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	1080
BsnI	GGCC	2 cut(s)	755, 1103
BsoBI	CYCGRG	1 cut(s)	436
Bsp119I	TTCGAA	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	8 cut(s)	97, 253, 271, 811, 871, 954, 1178, 1210
BspACI	CCGC	3 cut(s)	579, 737, 1007
BspANI	GGCC	2 cut(s)	755, 1103
BspCNI	CTCAG	3 cut(s)	709, 742, 781
BspHI	TCATGA	1 cut(s)	330
BspPI	GGATC	3 cut(s)	248, 819, 866
BspT104I	TTCGAA	1 cut(s)	286
BsrDI	GCAATG	2 cut(s)	128, 993
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	1169
BssMI	GATC	8 cut(s)	97, 253, 271, 811, 871, 954, 1178, 1210
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	1169
Bst4CI	ACNGT	2 cut(s)	426, 964
Bst6I	CTCTTC	5 cut(s)	488, 720, 831, 846, 1092
BstACI	GRCGYC	1 cut(s)	29
BstBI	TTCGAA	1 cut(s)	286
BstC8I	GCNNGC	4 cut(s)	135, 433, 546, 1041
BstDEI	CTNAG	6 cut(s)	75, 258, 448, 717, 750, 789
BstF5I	GGATG	7 cut(s)	274, 458, 587, 666, 736, 745, 1069
BstKTI	GATC	8 cut(s)	100, 256, 274, 814, 874, 957, 1181, 1213
BstMAI	GTCTC	3 cut(s)	98, 479, 516
BstMBI	GATC	8 cut(s)	97, 253, 271, 811, 871, 954, 1178, 1210
BstMCI	CGRYCG	1 cut(s)	1213
BstSCI	CCNGG	2 cut(s)	367, 597
BstSFI	CTRYAG	1 cut(s)	401
BstSLI	GKGCMC	1 cut(s)	511
BstV1I	GCAGC	7 cut(s)	535, 721, 730, 751, 769, 1013, 1108
BstV2I	GAAGAC	2 cut(s)	32, 903
Bsu36I	CCTNAGG	1 cut(s)	448
BsuRI	GGCC	2 cut(s)	755, 1103
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	7 cut(s)	274, 458, 587, 666, 736, 745, 1069
BtsIMutI	CAGTG	2 cut(s)	939, 969
Cac8I	GCNNGC	4 cut(s)	135, 433, 546, 1041
CciI	TCATGA	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	133
CseI	GACGC	2 cut(s)	37, 115
Csp6I	GTAC	1 cut(s)	856
CviAII	CATG	5 cut(s)	331, 385, 418, 616, 1145
CviQI	GTAC	1 cut(s)	856
DdeI	CTNAG	6 cut(s)	75, 258, 448, 717, 750, 789
DpnI	GATC	8 cut(s)	99, 255, 273, 813, 873, 956, 1180, 1212
DpnII	GATC	8 cut(s)	97, 253, 271, 811, 871, 954, 1178, 1210
Eam1104I	CTCTTC	5 cut(s)	488, 720, 831, 846, 1092
EarI	CTCTTC	5 cut(s)	488, 720, 831, 846, 1092
Eco130I	CCWWGG	1 cut(s)	1169
Eco81I	CCTNAGG	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	1169
EcoT22I	ATGCAT	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	1169
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	5 cut(s)	334, 388, 421, 619, 1148
FatI	CATG	5 cut(s)	330, 384, 417, 615, 1144
FauI	CCCGC	1 cut(s)	1000
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	7 cut(s)	549, 735, 744, 765, 783, 1027, 1122
FokI	GGATG	7 cut(s)	261, 465, 594, 673, 743, 752, 1076
Fsp4HI	GCNGC	7 cut(s)	549, 735, 744, 765, 783, 1027, 1122
GluI	GCNGC	7 cut(s)	549, 735, 744, 765, 783, 1027, 1122
HaeIII	GGCC	2 cut(s)	755, 1103
HapII	CCGG	4 cut(s)	134, 368, 599, 875
HgaI	GACGC	2 cut(s)	37, 115
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	5 cut(s)	334, 388, 421, 619, 1148
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HindIII	AAGCTT	2 cut(s)	51, 1041
HinfI	GANTC	3 cut(s)	327, 704, 1194
HpaII	CCGG	4 cut(s)	134, 368, 599, 875
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	3 cut(s)	97, 187, 1215
Hpy188III	TCNNGA	5 cut(s)	101, 331, 463, 820, 1021
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	2 cut(s)	282, 650
HpyCH4III	ACNGT	2 cut(s)	426, 964
HpyCH4IV	ACGT	2 cut(s)	189, 233
HpyF3I	CTNAG	6 cut(s)	75, 258, 448, 717, 750, 789
HpySE526I	ACGT	2 cut(s)	189, 233
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	5 cut(s)	334, 388, 421, 619, 1148
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	8 cut(s)	97, 253, 271, 811, 871, 954, 1178, 1210
LmnI	GCTCC	4 cut(s)	370, 456, 967, 1159
LpnPI	CCDG	8 cut(s)	147, 381, 612, 780, 850, 888, 1143, 1152
Lsp1109I	GCAGC	7 cut(s)	535, 721, 730, 751, 769, 1013, 1108
LweI	GCATC	5 cut(s)	480, 651, 721, 730, 1102
MaeII	ACGT	2 cut(s)	189, 233
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	8 cut(s)	99, 255, 273, 813, 873, 956, 1180, 1212
MboI	GATC	8 cut(s)	97, 253, 271, 811, 871, 954, 1178, 1210
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	4 cut(s)	146, 502, 619, 923
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	9 cut(s)	288, 646, 712, 721, 745, 784, 1026, 1093, 1234
Mph1103I	ATGCAT	1 cut(s)	473
MroNI	GCCGGC	1 cut(s)	133
MseI	TTAA	3 cut(s)	150, 353, 593
MspA1I	CMGCKG	1 cut(s)	579
MspI	CCGG	4 cut(s)	134, 368, 599, 875
MspR9I	CCNGG	2 cut(s)	369, 599
Mva1269I	GAATGC	1 cut(s)	1080
NaeI	GCCGGC	1 cut(s)	135
NciI	CCSGG	2 cut(s)	369, 599
NdeII	GATC	8 cut(s)	97, 253, 271, 811, 871, 954, 1178, 1210
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	5 cut(s)	334, 388, 421, 619, 1148
NsiI	ATGCAT	1 cut(s)	473
NspV	TTCGAA	1 cut(s)	286
PagI	TCATGA	1 cut(s)	330
PctI	GAATGC	1 cut(s)	1080
PdiI	GCCGGC	1 cut(s)	135
PfeI	GAWTC	3 cut(s)	327, 704, 1194
PkrI	GCNGC	7 cut(s)	550, 736, 745, 766, 784, 1028, 1123
Ple19I	CGATCG	1 cut(s)	1213
PshBI	ATTAAT	1 cut(s)	593
PvuI	CGATCG	1 cut(s)	1213
RsaI	GTAC	1 cut(s)	857
RsaNI	GTAC	1 cut(s)	856
SaqAI	TTAA	3 cut(s)	150, 353, 593
SatI	GCNGC	7 cut(s)	549, 735, 744, 765, 783, 1027, 1122
Sau3AI	GATC	8 cut(s)	97, 253, 271, 811, 871, 954, 1178, 1210
ScrFI	CCNGG	2 cut(s)	369, 599
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	5 cut(s)	480, 651, 721, 730, 1102
SfcI	CTRYAG	1 cut(s)	401
SfuI	TTCGAA	1 cut(s)	286
Sse9I	AATT	4 cut(s)	146, 502, 619, 923
SsiI	CCGC	3 cut(s)	579, 737, 1007
SspI	AATATT	1 cut(s)	805
StyD4I	CCNGG	2 cut(s)	367, 597
StyI	CCWWGG	1 cut(s)	1169
TaaI	ACNGT	2 cut(s)	426, 964
TaiI	ACGT	2 cut(s)	192, 236
TaqI	TCGA	3 cut(s)	100, 286, 1020
TasI	AATT	4 cut(s)	146, 502, 619, 923
TatI	WGTACW	1 cut(s)	855
TfiI	GAWTC	3 cut(s)	327, 704, 1194
Tru1I	TTAA	3 cut(s)	150, 353, 593
Tru9I	TTAA	3 cut(s)	150, 353, 593
TscAI	CASTG	2 cut(s)	946, 969
TseI	GCWGC	7 cut(s)	548, 734, 743, 764, 782, 1026, 1121
TspGWI	ACGGA	2 cut(s)	491, 824
TspRI	CASTG	2 cut(s)	946, 969
VspI	ATTAAT	1 cut(s)	593
XapI	RAATTY	3 cut(s)	146, 619, 923
Zsp2I	ATGCAT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.