Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

7265032 .. 7266344

Gene Structure 1313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07291.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCTATTGAGAGAAGTGTTGAAGAAGACGCCATTTTGGAACCTGATTGCACTATATGATAAGGGATTGATGAAAAAGGCCACAGCTGAAAAGTCGGATAAAGATGTGCATAGAATAGTTCAATGTTATGACACGTCTCTGAAGAAGTTCAGGTTTGGCAAACATTTGGCTGAAATATCAGTGTCTGATGTGCATTACATTTTGGGATTGCCTATGTCAGGCCTCACAGTGCCAAACCCAAAAGATGGTTCAAGGAAGCCAACTGATAATCCTATTGTTCAAAGGTTTTTTGCCGAAGAAAAAAGGATTGAAAGAGCAAAGATAATGAGTTGTATTGATGCTGAGCTATACAATGAAGAATCTCCGGAACGGATAGAGAATATTGCAATATTAATGATACTGCATCTGTTCATCACGCAACTATTTGCAAGCGCTGGATTGAAATTAGGATGGAGCTTCGTTAAGTGCATAGCGGACATGAACAATTATAACTGGGCGAAAGGTATTGATTATGCAGTTGTAGAAAAAAGAAGAAACATTTATGCAGCCATAGAAAACAGTGATGATGACTTCGAGGACCCTCAGTTGAAGATTCAACCCAAGAAAAGAAAGATGGAAGCTAAGAAAGAGAAAGTAGGTGTTGCGGTGAGAAGAAACAAGATCGAAAAGAAAGCCAAAGTCACTGCAAAGAAATCAAACAAAAACAAAAAGAAGGATGCTGCTGAAGAAGTTCAAGAGGATGCTGCCGACCAATTTATGGACATAGCTACTGAACAAGTTCAAGAGGGTGCTGCTGAACAAGTTCAAGAGGATGCTACCGACCAAATTATGGAGATAGCTACTAAACAAGTTCAAGTGGGTGTTGCTGAACAAGTTCAAGAGGAACCTAAATACTTGGCATTAGAAGATTGGGTAAATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

308

Amino Acids

35.06

Weight (kDa)

6.93

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AccB7I	CCANNNNNTGG	3 cut(s)	245, 757, 829
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	2 cut(s)	473, 644
AcuI	CTGAAG	2 cut(s)	161, 744
AcyI	GRCGYC	1 cut(s)	29
AfeI	AGCGCT	1 cut(s)	433
AfiI	CCNNNNNNNGG	4 cut(s)	218, 245, 757, 829
AflIII	ACRYGT	1 cut(s)	132
AjiI	CACGTC	1 cut(s)	135
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
AluBI	AGCT	6 cut(s)	86, 346, 456, 620, 767, 839
AluI	AGCT	6 cut(s)	86, 346, 456, 620, 767, 839
Alw26I	GTCTC	1 cut(s)	141
AlwNI	CAGNNNCTG	1 cut(s)	185
Aor13HI	TCCGGA	1 cut(s)	364
Aor51HI	AGCGCT	1 cut(s)	433
AoxI	GGCC	2 cut(s)	78, 220
ApeKI	GCWGC	4 cut(s)	545, 719, 743, 791
AseI	ATTAAT	1 cut(s)	392
Asp700I	GAANNNNTTC	5 cut(s)	146, 729, 777, 801, 873
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	577
AsuHPI	GGTGA	1 cut(s)	658
AvaII	GGWCC	1 cut(s)	577
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	4 cut(s)	557, 706, 730, 778
BccI	CCATC	3 cut(s)	239, 444, 607
BcoDI	GTCTC	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	435
BisI	GCNGC	4 cut(s)	546, 720, 744, 792
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	4 cut(s)	547, 721, 745, 793
Bme18I	GGWCC	1 cut(s)	577
BmgBI	CACGTC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	3 cut(s)	41, 579, 885
BmrI	ACTGGG	1 cut(s)	502
BmsI	GCATC	5 cut(s)	328, 412, 706, 730, 802
BmuI	ACTGGG	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	32
Bpu1102I	GCTNAGC	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	4 cut(s)	218, 245, 757, 829
Bse1I	ACTGG	1 cut(s)	497
BseAI	TCCGGA	1 cut(s)	364
BseGI	GGATG	4 cut(s)	455, 721, 745, 817
BseLI	CCNNNNNNNGG	4 cut(s)	218, 245, 757, 829
BseMII	CTCAG	2 cut(s)	333, 596
BseNI	ACTGG	1 cut(s)	497
BseXI	GCAGC	4 cut(s)	557, 706, 730, 778
BshFI	GGCC	2 cut(s)	80, 222
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	4 cut(s)	218, 245, 757, 829
BsmAI	GTCTC	1 cut(s)	141
BsmBI	CGTCTC	1 cut(s)	141
BsnI	GGCC	2 cut(s)	80, 222
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	1 cut(s)	660
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	2 cut(s)	473, 644
BspANI	GGCC	2 cut(s)	80, 222
BspCNI	CTCAG	2 cut(s)	334, 595
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	41, 579, 885
BsrI	ACTGG	1 cut(s)	497
BssMI	GATC	1 cut(s)	660
BssNI	GRCGYC	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	229, 560
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	3 cut(s)	342, 582, 621
BstENI	CCTNNNNNAGG	1 cut(s)	216
BstF5I	GGATG	4 cut(s)	455, 721, 745, 817
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	1 cut(s)	663
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	660
BstV1I	GCAGC	4 cut(s)	557, 706, 730, 778
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	80, 222
BtrI	CACGTC	1 cut(s)	135
BtsCI	GGATG	4 cut(s)	455, 721, 745, 817
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	4 cut(s)	186, 234, 565, 681
Cac8I	GCNNGC	1 cut(s)	430
CaiI	CAGNNNCTG	1 cut(s)	185
CfoI	GCGC	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	577
CseI	GACGC	1 cut(s)	37
CviAII	CATG	1 cut(s)	478
DdeI	CTNAG	3 cut(s)	342, 582, 621
DpnI	GATC	1 cut(s)	662
DpnII	GATC	1 cut(s)	660
Eco147I	AGGCCT	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	577
Eco47III	AGCGCT	1 cut(s)	433
Eco57I	CTGAAG	2 cut(s)	161, 744
EcoNI	CCTNNNNNAGG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	577
EcoT22I	ATGCAT	1 cut(s)	922
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	1 cut(s)	481
FatI	CATG	1 cut(s)	477
Fnu4HI	GCNGC	4 cut(s)	546, 720, 744, 792
FokI	GGATG	4 cut(s)	462, 728, 752, 824
Fsp4HI	GCNGC	4 cut(s)	546, 720, 744, 792
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	4 cut(s)	546, 720, 744, 792
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	80, 222
HapII	CCGG	1 cut(s)	365
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	434
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	481
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	2 cut(s)	359, 592
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	658
Hpy188I	TCNGA	3 cut(s)	97, 141, 187
Hpy188III	TCNNGA	5 cut(s)	365, 734, 782, 806, 878
HpyAV	CCTTC	1 cut(s)	706
HpyCH4III	ACNGT	2 cut(s)	229, 560
HpyCH4IV	ACGT	1 cut(s)	134
HpyF3I	CTNAG	3 cut(s)	342, 582, 621
HpySE526I	ACGT	1 cut(s)	134
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	481
HspAI	GCGC	1 cut(s)	432
Kpn2I	TCCGGA	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	660
LmnI	GCTCC	1 cut(s)	453
LpnPI	CCDG	6 cut(s)	56, 136, 204, 378, 420, 478
Lsp1109I	GCAGC	4 cut(s)	557, 706, 730, 778
LweI	GCATC	5 cut(s)	328, 412, 706, 730, 802
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	1 cut(s)	662
MboI	GATC	1 cut(s)	660
MluCI	AATT	4 cut(s)	443, 484, 752, 825
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	7 cut(s)	233, 568, 591, 730, 778, 802, 874
Mph1103I	ATGCAT	1 cut(s)	922
MroI	TCCGGA	1 cut(s)	364
MroXI	GAANNNNTTC	5 cut(s)	146, 729, 777, 801, 873
MseI	TTAA	2 cut(s)	392, 462
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	1 cut(s)	365
NdeII	GATC	1 cut(s)	660
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	3 cut(s)	41, 579, 885
NmuCI	GTSAC	1 cut(s)	679
NsiI	ATGCAT	1 cut(s)	922
PceI	AGGCCT	1 cut(s)	222
PdmI	GAANNNNTTC	5 cut(s)	146, 729, 777, 801, 873
PfeI	GAWTC	2 cut(s)	359, 592
PflMI	CCANNNNNTGG	3 cut(s)	245, 757, 829
PkrI	GCNGC	4 cut(s)	547, 721, 745, 793
PpuMI	RGGWCCY	1 cut(s)	577
PshBI	ATTAAT	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	577
PspN4I	GGNNCC	3 cut(s)	41, 579, 885
PspPI	GGNCC	1 cut(s)	577
PspPPI	RGGWCCY	1 cut(s)	577
PstNI	CAGNNNCTG	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	392, 462
SatI	GCNGC	4 cut(s)	546, 720, 744, 792
Sau3AI	GATC	1 cut(s)	660
Sau96I	GGNCC	1 cut(s)	577
SfaNI	GCATC	5 cut(s)	328, 412, 706, 730, 802
SinI	GGWCC	1 cut(s)	577
Sse9I	AATT	4 cut(s)	443, 484, 752, 825
SseBI	AGGCCT	1 cut(s)	222
SsiI	CCGC	2 cut(s)	473, 644
SspI	AATATT	2 cut(s)	382, 390
StuI	AGGCCT	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	229, 560
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	2 cut(s)	573, 663
TasI	AATT	4 cut(s)	443, 484, 752, 825
TfiI	GAWTC	2 cut(s)	359, 592
Tru1I	TTAA	2 cut(s)	392, 462
Tru9I	TTAA	2 cut(s)	392, 462
TscAI	CASTG	4 cut(s)	186, 234, 565, 688
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	4 cut(s)	545, 719, 743, 791
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	4 cut(s)	86, 369, 400, 494
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	4 cut(s)	186, 234, 565, 688
Van91I	CCANNNNNTGG	3 cut(s)	245, 757, 829
VpaK11BI	GGWCC	1 cut(s)	577
VspI	ATTAAT	1 cut(s)	392
XagI	CCTNNNNNAGG	1 cut(s)	216
XmnI	GAANNNNTTC	5 cut(s)	146, 729, 777, 801, 873
Zsp2I	ATGCAT	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.