Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

1685492 .. 1688648

Gene Structure 3157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01271.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGTTGGCATTTGAAGAAGTATTCACCAATGTTTGCAAGGACTTAGGTGAAGATAAAGAGATTTTAAGAAATGAGCTAATGAAGACACCATTCTGGGATTTCATATCAATATATGATAGACATTTGGTGTCAAAATCCACTGCAAAGAAGTCGGATAGAGAAATTCAGCGATTGATTGACTGCTACGTGCCAAAATTGAAGAAGTTCAAGTTTGGAAACAAGGTGGCTGAGATCAGTGTGTCTGATGTAGCGCAGATTTTTGGGGTGCAAAACCCAAAAAACGGGCTCAATGTGCCGACCCCACTTGAAGATTCAAAAAAGCCTGTGGATAATTCAGTGGTGGATAATGTAGTTGGTGACGATGACTTTGAGAACCCTCCACCGAAGAATGGTGCTACTACGCATGATGAGGTGGGAAAGAAGAAAGCAACGAGGAAGAACTTGAAGAAGGGTGCTACTGCACAAGTTGAAGAGGGTGTTTCTGTGGTGGCTGAGAAGGGTGGTCCTGCAGAATCAGAAGAAGCTGCTCCTATGGTGACTAAGAAGGGTGCTACTACACAAGCCGAAGAGGGTGCTTCTGTGGTGGCTGAGAAGGGAGCTAGTGCACAAACTGAAGAGGGTGCTTCTGTGGTGGCTGAGAAGGGTGGTCCTACAGAATCTGAAGAGGATGCTCATGTGGTGTCTGAGAAGGGAGATGGTGCGCAAACCAAAGAGGGTGCTAGTGTACAACTTGAAGAAGGTGCTACTGCACAAGCCAAAAAGCGTACTCCTGTGGTGGCTGAGAAGGGTGCTACTGCACAAGCCGTAGAGGGTTCTAGTGGACAAGCCGAAGAGGGTGCTACTTCAAAAGCCGAAGAGGATACTCGTGAAGGCCTTGAATCATTTGACATGACATTACATGGTTGGCTGGAAGGGAATGAAAAAGCTGCTGCTGTGGACGATGAAGGTGAAACATATGAAGAAGCAACAGCAAACACGGAAGAGATTTTGAAGAAGTTTTTTAATAAAGATAAGGATGTGGATCAAGGAGGAGGACATGAAGAGTTTGCGAGTGAGAAAATGTATGATCCAGAGGACTTCAGGTTGTATGAAGAGTTTGTTGAAAAGGAGTCTAGGGAATTTCCAAAAGCAACTAGTGATGAGGAATGTGATGCTCTTGATTACATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

391

Amino Acids

42.29

Weight (kDa)

4.58

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	702
AclWI	GGATC	2 cut(s)	1029, 1061
AcsI	RAATTY	2 cut(s)	162, 1118
AcuI	CTGAAG	3 cut(s)	633, 681, 1063
AfaI	GTAC	2 cut(s)	726, 766
AfiI	CCNNNNNNNGG	2 cut(s)	281, 389
AhlI	ACTAGT	1 cut(s)	1133
AluBI	AGCT	4 cut(s)	76, 524, 599, 926
AluI	AGCT	4 cut(s)	76, 524, 599, 926
Alw21I	GWGCWC	1 cut(s)	607
Alw44I	GTGCAC	1 cut(s)	603
AlwI	GGATC	2 cut(s)	1029, 1061
AlwNI	CAGNNNCTG	1 cut(s)	659
AoxI	GGCC	1 cut(s)	871
ApaLI	GTGCAC	1 cut(s)	603
ApeKI	GCWGC	3 cut(s)	524, 926, 929
ApoI	RAATTY	2 cut(s)	162, 1118
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
Asp700I	GAANNNNTTC	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	253, 703
AspS9I	GGNCC	2 cut(s)	503, 647
AsuHPI	GGTGA	5 cut(s)	16, 59, 368, 547, 959
AvaII	GGWCC	2 cut(s)	503, 647
BaeGI	GKGCMC	1 cut(s)	607
BanII	GRGCYC	1 cut(s)	288
BauI	CACGAG	1 cut(s)	864
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	3 cut(s)	511, 913, 916
BccI	CCATC	1 cut(s)	689
BceAI	ACGGC	1 cut(s)	788
BcgI	CGANNNNNNTGC	6 cut(s)	132, 166, 554, 588, 818, 852
BciVI	GTATCC	1 cut(s)	853
BcuI	ACTAGT	1 cut(s)	1133
BfaI	CTAG	5 cut(s)	600, 720, 816, 1113, 1134
BfmI	CTRYAG	2 cut(s)	507, 651
BfuI	GTATCC	1 cut(s)	853
BisI	GCNGC	3 cut(s)	525, 927, 930
BlsI	GCNGC	3 cut(s)	526, 928, 931
Bme18I	GGWCC	2 cut(s)	503, 647
BmgT120I	GGNCC	2 cut(s)	503, 647
BmsI	GCATC	2 cut(s)	658, 1141
BpiI	GAAGAC	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	1020
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 389
Bse8I	GATNNNNATC	1 cut(s)	1020
BseGI	GGATG	2 cut(s)	673, 1021
BseJI	GATNNNNATC	1 cut(s)	1020
BseLI	CCNNNNNNNGG	2 cut(s)	281, 389
BseMII	CTCAG	6 cut(s)	219, 483, 579, 627, 675, 771
BseRI	GAGGAG	1 cut(s)	1044
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	3 cut(s)	511, 913, 916
BsgI	GTGCAG	3 cut(s)	444, 732, 780
BshFI	GGCC	1 cut(s)	873
BsiHKAI	GWGCWC	1 cut(s)	607
BslI	CCNNNNNNNGG	2 cut(s)	281, 389
BsnI	GGCC	1 cut(s)	873
Bsp1286I	GDGCHC	2 cut(s)	288, 607
Bsp1407I	TGTACA	1 cut(s)	724
Bsp143I	GATC	3 cut(s)	231, 1021, 1066
BspANI	GGCC	1 cut(s)	873
BspCNI	CTCAG	6 cut(s)	220, 484, 580, 628, 676, 772
BspMAI	CTGCAG	1 cut(s)	511
BspPI	GGATC	2 cut(s)	1029, 1061
BsrGI	TGTACA	1 cut(s)	724
BssMI	GATC	3 cut(s)	231, 1021, 1066
BssSI	CACGAG	1 cut(s)	864
Bst2BI	CACGAG	1 cut(s)	864
Bst6I	CTCTTC	9 cut(s)	465, 561, 609, 657, 825, 849, 975, 1035, 1086
BstAUI	TGTACA	1 cut(s)	724
BstBAI	YACGTR	1 cut(s)	187
BstDEI	CTNAG	8 cut(s)	43, 228, 492, 540, 588, 636, 684, 780
BstF5I	GGATG	2 cut(s)	673, 1021
BstHHI	GCGC	2 cut(s)	253, 703
BstKTI	GATC	3 cut(s)	234, 1024, 1069
BstMBI	GATC	3 cut(s)	231, 1021, 1066
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstSFI	CTRYAG	2 cut(s)	507, 651
BstSLI	GKGCMC	1 cut(s)	607
BstV1I	GCAGC	3 cut(s)	511, 913, 916
BstV2I	GAAGAC	1 cut(s)	89
BsuI	GTATCC	1 cut(s)	853
BsuRI	GGCC	1 cut(s)	873
BtsCI	GGATG	2 cut(s)	673, 1021
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	3 cut(s)	138, 241, 342
CaiI	CAGNNNCTG	1 cut(s)	659
CfoI	GCGC	2 cut(s)	253, 703
Cfr13I	GGNCC	2 cut(s)	503, 647
Csp6I	GTAC	2 cut(s)	725, 765
CviAII	CATG	5 cut(s)	404, 674, 889, 899, 1037
CviQI	GTAC	2 cut(s)	725, 765
DdeI	CTNAG	8 cut(s)	43, 228, 492, 540, 588, 636, 684, 780
DpnI	GATC	3 cut(s)	233, 1023, 1068
DpnII	GATC	3 cut(s)	231, 1021, 1066
Eam1104I	CTCTTC	9 cut(s)	465, 561, 609, 657, 825, 849, 975, 1035, 1086
EarI	CTCTTC	9 cut(s)	465, 561, 609, 657, 825, 849, 975, 1035, 1086
Eco147I	AGGCCT	1 cut(s)	873
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	503, 647
Eco57I	CTGAAG	3 cut(s)	633, 681, 1063
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	5 cut(s)	407, 677, 892, 902, 1040
FatI	CATG	5 cut(s)	403, 673, 888, 898, 1036
FauNDI	CATATG	1 cut(s)	955
Fnu4HI	GCNGC	3 cut(s)	525, 927, 930
FokI	GGATG	2 cut(s)	680, 1028
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	3 cut(s)	525, 927, 930
FspBI	CTAG	5 cut(s)	600, 720, 816, 1113, 1134
FspI	TGCGCA	1 cut(s)	702
GlaI	GCGC	2 cut(s)	252, 702
GluI	GCNGC	3 cut(s)	525, 927, 930
HaeIII	GGCC	1 cut(s)	873
HhaI	GCGC	2 cut(s)	253, 703
Hin1II	CATG	5 cut(s)	407, 677, 892, 902, 1040
Hin6I	GCGC	2 cut(s)	251, 701
HinP1I	GCGC	2 cut(s)	251, 701
HinfI	GANTC	5 cut(s)	311, 512, 656, 878, 1109
HphI	GGTGA	5 cut(s)	16, 59, 368, 547, 959
Hpy166II	GTNNAC	4 cut(s)	605, 725, 821, 937
Hpy188I	TCNGA	5 cut(s)	154, 244, 517, 661, 685
Hpy188III	TCNNGA	3 cut(s)	866, 1070, 1157
Hpy8I	GTNNAC	4 cut(s)	605, 725, 821, 937
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	8 cut(s)	36, 143, 268, 461, 509, 605, 749, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	8 cut(s)	43, 228, 492, 540, 588, 636, 684, 780
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	5 cut(s)	407, 677, 892, 902, 1040
HspAI	GCGC	2 cut(s)	251, 701
Kzo9I	GATC	3 cut(s)	231, 1021, 1066
LmnI	GCTCC	2 cut(s)	532, 596
LpnPI	CCDG	7 cut(s)	79, 336, 519, 783, 893, 1066, 1083
Lsp1109I	GCAGC	3 cut(s)	511, 913, 916
LweI	GCATC	2 cut(s)	658, 1141
MaeI	CTAG	5 cut(s)	600, 720, 816, 1113, 1134
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	356, 535
MalI	GATC	3 cut(s)	233, 1023, 1068
MboI	GATC	3 cut(s)	231, 1021, 1066
MhlI	GDGCHC	2 cut(s)	288, 607
MluCI	AATT	4 cut(s)	162, 194, 331, 1118
MlyI	GAGTC	1 cut(s)	1118
MmeI	TCCRAC	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	2 cut(s)	65, 1002
MwoI	GCNNNNNNNGC	1 cut(s)	292
NdeI	CATATG	1 cut(s)	955
NdeII	GATC	3 cut(s)	231, 1021, 1066
NlaIII	CATG	5 cut(s)	407, 677, 892, 902, 1040
NmuCI	GTSAC	2 cut(s)	356, 535
NsbI	TGCGCA	1 cut(s)	702
PceI	AGGCCT	1 cut(s)	873
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	4 cut(s)	311, 512, 656, 878
PkrI	GCNGC	3 cut(s)	526, 928, 931
PleI	GAGTC	1 cut(s)	1117
PpsI	GAGTC	1 cut(s)	1117
Ppu21I	YACGTR	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	503, 647
PstI	CTGCAG	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	659
RsaI	GTAC	2 cut(s)	726, 766
RsaNI	GTAC	2 cut(s)	725, 765
SaqAI	TTAA	2 cut(s)	65, 1002
SatI	GCNGC	3 cut(s)	525, 927, 930
Sau3AI	GATC	3 cut(s)	231, 1021, 1066
Sau96I	GGNCC	2 cut(s)	503, 647
SchI	GAGTC	1 cut(s)	1118
SduI	GDGCHC	2 cut(s)	288, 607
SfaNI	GCATC	2 cut(s)	658, 1141
SfcI	CTRYAG	2 cut(s)	507, 651
SinI	GGWCC	2 cut(s)	503, 647
SpeI	ACTAGT	1 cut(s)	1133
Sse9I	AATT	4 cut(s)	162, 194, 331, 1118
SseBI	AGGCCT	1 cut(s)	873
SspMI	CTAG	5 cut(s)	600, 720, 816, 1113, 1134
StuI	AGGCCT	1 cut(s)	873
TaiI	ACGT	1 cut(s)	189
TasI	AATT	4 cut(s)	162, 194, 331, 1118
TatI	WGTACW	1 cut(s)	724
TfiI	GAWTC	4 cut(s)	311, 512, 656, 878
Tru1I	TTAA	2 cut(s)	65, 1002
Tru9I	TTAA	2 cut(s)	65, 1002
TscAI	CASTG	3 cut(s)	145, 241, 342
TseFI	GTSAC	2 cut(s)	356, 535
TseI	GCWGC	3 cut(s)	524, 926, 929
Tsp45I	GTSAC	2 cut(s)	356, 535
TspDTI	ATGAA	7 cut(s)	91, 95, 933, 957, 972, 1053, 1104
TspGWI	ACGGA	1 cut(s)	992
TspRI	CASTG	3 cut(s)	145, 241, 342
VneI	GTGCAC	1 cut(s)	603
VpaK11BI	GGWCC	2 cut(s)	503, 647
XapI	RAATTY	2 cut(s)	162, 1118
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	5 cut(s)	600, 720, 816, 1113, 1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.