Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

4260112 .. 4263827

Gene Structure 3716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05173.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGATACTAATGAGCCAAAAAGAAACAGAGGTGGCAAACGATATACAGGTGCAAAATGATATGAATACCAATCCGAAAGGGAAGCGATATAAGACTCTAGCGCGTAGAAAAAAGTTTCCAAGGAAGGGTAAACAACAGCAAAAAGCCAAGGAAGTAGACAAGGTTAAAAAGCCAAGGTGTGAGCAGAAATTTCGTCAATTCAGATGCAACATGTTGGCATTTGAAGAAGTATTCACCAAGGTTGATAATGTAGTTGGTGACGATGACTTTGAGAACCCTCCACCGAAGAATGGTGCTACTACGCATGATGAGGTGGGAAAGAAGAAAGCAGCGAGGAAGAACTTGAAGAAGGGTGCTACTGCACAAGTTGAAGAGGGTGTTTTTGTGGTGGCTGAGAAGGGTGGTCCTGCAGAATCAGAAGAAGCTGCTCCTATAGTGACTAAGAAGGGTGCTACTGCACAAGCCGAAGAGGGTGCTTCTATGGTGGCTGAGAAAGGTGATCCTACAGAATCTGAAGAGGATGCTCATGTGGTGTCTGAGAAGGGAGATGGTGCGCAAACCAAAGAGGGTGCTAGTGTACAACTTGAAGAAGGTGCTACTGCACAAGCCGAAAAGGGTACTCCTGTGGTGGCTAAGAAGGGTGCTATTGCACAAGCCGTAGAGGGTTCTAGTGGACAAGCCGAAGAGGGTGCTACTTCAGAAGCCGAAGAGGATACTCGTGAAGGCCTTGAATCATTCGACATGACATTACATAGTTGGCTGGAAGGGAATGAAAAAGCTGCTGTTGTGGACGATGAAGGTGAAACATATGAAGAAGCAACAGCAAACACAGAAGAGATTTTGAAGAAGTTTTTCAATAAAGATAAGGATGCGGATCAAGGAGGAGGACATGAAGAGTTTGCAAGTGAGAAAATGTATGATCCGGAGGACTTCAGGTTGTATGAAGAGTTTGTTGAAAAGGAGTTTAGGGAATTTCCAAAAGCAACTAGTGATGAGGAGTTGGAATACTGGCAAGGTTTGGCCAAAGTAAGGGGAGAAATGGTGGCGAGTGCAATCTATAGCTACAAATCAAAGAATGACTCCTATGTGATGCTTTGGGATGAAAGAGAAGAATTGAAGAGAAATAACAAAAAGTTGAAGAAAAAACTGGAGCAGAAAAATGATTACATAAAAAAGTTGGAATACAAGTATAAATTGTTGTTGCTAGGACAAAAGGGAGAAACGAGTGAGGTTGGTGTTACAACTCAGATTGAAGGAGGTTCAGATGGAAATGATGTAGAAGGTTTAGGAGCGGAAAAGGTTGCTACTGCAGAGGGAGAAGAAGGTTTAGCTGAAAATGTTGCTACTGTAGGGGAAGAAGAAGGTTTAGCTAGAAATGTAGAAGGTGCAGGGGAAGAAGGTTGTTCAGATGTAGGAGGTGCAGCTGAAAGAGAAGGACCGAGGACACGTTCAGTTGTAAGAAGGATCAAAGCAAGAACCGACCGGAAAGAGAAGAAGATGGAAGATTTTGAGGTCCAGATTCCCTTAAAGAGACAAAGGAAGAAGCGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

518

Amino Acids

57.34

Weight (kDa)

5.06

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	555
AccBSI	CCGCTC	1 cut(s)	1292
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	103
AccIII	TCCGGA	1 cut(s)	922
AciI	CCGC	2 cut(s)	872, 1292
AclWI	GGATC	4 cut(s)	494, 882, 914, 1472
AcoI	YGGCCR	1 cut(s)	1020
AcsI	RAATTY	2 cut(s)	188, 971
AcuI	CTGAAG	3 cut(s)	534, 681, 916
AfaI	GTAC	2 cut(s)	579, 619
AfiI	CCNNNNNNNGG	3 cut(s)	125, 290, 1029
AflIII	ACRYGT	2 cut(s)	210, 1445
AhlI	ACTAGT	1 cut(s)	986
AluBI	AGCT	6 cut(s)	425, 779, 1062, 1331, 1370, 1424
AluI	AGCT	6 cut(s)	425, 779, 1062, 1331, 1370, 1424
Alw26I	GTCTC	1 cut(s)	1525
AlwI	GGATC	4 cut(s)	494, 882, 914, 1472
AlwNI	CAGNNNCTG	1 cut(s)	512
Aor13HI	TCCGGA	1 cut(s)	922
AoxI	GGCC	2 cut(s)	724, 1020
ApeKI	GCWGC	4 cut(s)	329, 425, 779, 1421
ApoI	RAATTY	2 cut(s)	188, 971
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
Asp700I	GAANNNNTTC	1 cut(s)	851
AspLEI	GCGC	2 cut(s)	103, 556
AspS9I	GGNCC	3 cut(s)	404, 1436, 1513
AsuHPI	GGTGA	4 cut(s)	226, 269, 509, 812
AvaII	GGWCC	3 cut(s)	404, 1436, 1513
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BalI	TGGCCA	1 cut(s)	1022
BauI	CACGAG	1 cut(s)	717
BbvI	GCAGC	4 cut(s)	341, 412, 766, 1433
BccI	CCATC	3 cut(s)	542, 1259, 1492
BceAI	ACGGC	1 cut(s)	641
BcgI	CGANNNNNNTGC	6 cut(s)	173, 207, 455, 489, 671, 705
BciVI	GTATCC	1 cut(s)	706
BcoDI	GTCTC	1 cut(s)	1525
BcuI	ACTAGT	1 cut(s)	986
BfaI	CTAG	6 cut(s)	98, 573, 669, 987, 1205, 1371
BfmI	CTRYAG	6 cut(s)	408, 432, 504, 1057, 1308, 1347
BfuI	GTATCC	1 cut(s)	706
BisI	GCNGC	4 cut(s)	330, 426, 780, 1422
BlsI	GCNGC	4 cut(s)	331, 427, 781, 1423
Bme18I	GGWCC	3 cut(s)	404, 1436, 1513
BmgT120I	GGNCC	3 cut(s)	404, 1436, 1513
BmsI	GCATC	4 cut(s)	194, 511, 859, 1080
BpmI	CTGGAG	1 cut(s)	1169
BsaBI	GATNNNNATC	1 cut(s)	873
BsaJI	CCNNGG	5 cut(s)	119, 147, 173, 237, 1439
BsaWI	WCCGGW	2 cut(s)	922, 1482
BsaXI	ACNNNNNCTCC	2 cut(s)	1026, 1056
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 290, 1029
Bse1I	ACTGG	2 cut(s)	1013, 1152
Bse8I	GATNNNNATC	1 cut(s)	873
BseAI	TCCGGA	1 cut(s)	922
BseDI	CCNNGG	5 cut(s)	119, 147, 173, 237, 1439
BseGI	GGATG	3 cut(s)	526, 874, 1105
BseJI	GATNNNNATC	1 cut(s)	873
BseLI	CCNNNNNNNGG	3 cut(s)	125, 290, 1029
BseMII	CTCAG	4 cut(s)	384, 480, 528, 1259
BseNI	ACTGG	2 cut(s)	1013, 1152
BseRI	GAGGAG	2 cut(s)	897, 1010
BseXI	GCAGC	4 cut(s)	341, 412, 766, 1433
BsgI	GTGCAG	5 cut(s)	345, 441, 585, 1407, 1440
Bsh1236I	CGCG	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	1483
BshFI	GGCC	2 cut(s)	726, 1022
BsiEI	CGRYCG	1 cut(s)	1483
BsiSI	CCGG	2 cut(s)	923, 1483
BslI	CCNNNNNNNGG	3 cut(s)	125, 290, 1029
BsmAI	GTCTC	1 cut(s)	1525
BsnI	GGCC	2 cut(s)	726, 1022
Bsp13I	TCCGGA	1 cut(s)	922
Bsp1407I	TGTACA	1 cut(s)	577
Bsp143I	GATC	4 cut(s)	499, 874, 919, 1464
BspACI	CCGC	2 cut(s)	872, 1292
BspANI	GGCC	2 cut(s)	726, 1022
BspCNI	CTCAG	4 cut(s)	385, 481, 529, 1258
BspEI	TCCGGA	1 cut(s)	922
BspFNI	CGCG	1 cut(s)	103
BspMAI	CTGCAG	2 cut(s)	412, 1312
BspPI	GGATC	4 cut(s)	494, 882, 914, 1472
BsrBI	CCGCTC	1 cut(s)	1292
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	2 cut(s)	1013, 1152
BssECI	CCNNGG	5 cut(s)	119, 147, 173, 237, 1439
BssMI	GATC	4 cut(s)	499, 874, 919, 1464
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	4 cut(s)	119, 147, 173, 237
Bst2BI	CACGAG	1 cut(s)	717
Bst4CI	ACNGT	1 cut(s)	1348
Bst6I	CTCTTC	9 cut(s)	366, 462, 510, 678, 702, 828, 888, 939, 1112
BstAUI	TGTACA	1 cut(s)	577
BstDEI	CTNAG	6 cut(s)	393, 441, 489, 537, 633, 1245
BstF5I	GGATG	3 cut(s)	526, 874, 1105
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	2 cut(s)	103, 556
BstKTI	GATC	4 cut(s)	502, 877, 922, 1467
BstMAI	GTCTC	1 cut(s)	1525
BstMBI	GATC	4 cut(s)	499, 874, 919, 1464
BstMCI	CGRYCG	1 cut(s)	1483
BstNSI	RCATGY	1 cut(s)	214
BstSFI	CTRYAG	6 cut(s)	408, 432, 504, 1057, 1308, 1347
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	4 cut(s)	341, 412, 766, 1433
BsuI	GTATCC	1 cut(s)	706
BsuRI	GGCC	2 cut(s)	726, 1022
BtsCI	GGATG	3 cut(s)	526, 874, 1105
CaiI	CAGNNNCTG	1 cut(s)	512
CfoI	GCGC	2 cut(s)	103, 556
Cfr13I	GGNCC	3 cut(s)	404, 1436, 1513
Csp6I	GTAC	2 cut(s)	578, 618
CviAII	CATG	5 cut(s)	211, 305, 527, 742, 890
CviQI	GTAC	2 cut(s)	578, 618
DdeI	CTNAG	6 cut(s)	393, 441, 489, 537, 633, 1245
DpnI	GATC	4 cut(s)	501, 876, 921, 1466
DpnII	GATC	4 cut(s)	499, 874, 919, 1464
EaeI	YGGCCR	1 cut(s)	1020
Eam1104I	CTCTTC	9 cut(s)	366, 462, 510, 678, 702, 828, 888, 939, 1112
EarI	CTCTTC	9 cut(s)	366, 462, 510, 678, 702, 828, 888, 939, 1112
Eco130I	CCWWGG	4 cut(s)	119, 147, 173, 237
Eco147I	AGGCCT	1 cut(s)	726
Eco47I	GGWCC	3 cut(s)	404, 1436, 1513
Eco57I	CTGAAG	3 cut(s)	534, 681, 916
EcoT14I	CCWWGG	4 cut(s)	119, 147, 173, 237
ErhI	CCWWGG	4 cut(s)	119, 147, 173, 237
FaeI	CATG	5 cut(s)	214, 308, 530, 745, 893
FatI	CATG	5 cut(s)	210, 304, 526, 741, 889
FauNDI	CATATG	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	4 cut(s)	330, 426, 780, 1422
FokI	GGATG	3 cut(s)	533, 881, 1112
Fsp4HI	GCNGC	4 cut(s)	330, 426, 780, 1422
FspBI	CTAG	6 cut(s)	98, 573, 669, 987, 1205, 1371
FspI	TGCGCA	1 cut(s)	555
GlaI	GCGC	2 cut(s)	102, 555
GluI	GCNGC	4 cut(s)	330, 426, 780, 1422
GsuI	CTGGAG	1 cut(s)	1169
HaeIII	GGCC	2 cut(s)	726, 1022
HapII	CCGG	2 cut(s)	923, 1483
HhaI	GCGC	2 cut(s)	103, 556
Hin1II	CATG	5 cut(s)	214, 308, 530, 745, 893
Hin6I	GCGC	2 cut(s)	101, 554
HinP1I	GCGC	2 cut(s)	101, 554
HinfI	GANTC	6 cut(s)	94, 413, 509, 731, 1079, 1519
HpaII	CCGG	2 cut(s)	923, 1483
HphI	GGTGA	4 cut(s)	226, 269, 509, 812
Hpy166II	GTNNAC	5 cut(s)	131, 157, 578, 674, 790
Hpy188I	TCNGA	9 cut(s)	75, 203, 418, 514, 538, 700, 1248, 1264, 1408
Hpy188III	TCNNGA	3 cut(s)	719, 923, 1516
Hpy8I	GTNNAC	5 cut(s)	131, 157, 578, 674, 790
HpyCH4III	ACNGT	1 cut(s)	1348
HpyCH4IV	ACGT	1 cut(s)	1447
HpyF3I	CTNAG	6 cut(s)	393, 441, 489, 537, 633, 1245
HpySE526I	ACGT	1 cut(s)	1447
Hsp92II	CATG	5 cut(s)	214, 308, 530, 745, 893
HspAI	GCGC	2 cut(s)	101, 554
Kpn2I	TCCGGA	1 cut(s)	922
Kzo9I	GATC	4 cut(s)	499, 874, 919, 1464
LmnI	GCTCC	3 cut(s)	433, 1150, 1289
Lsp1109I	GCAGC	4 cut(s)	341, 412, 766, 1433
LweI	GCATC	4 cut(s)	194, 511, 859, 1080
MaeI	CTAG	6 cut(s)	98, 573, 669, 987, 1205, 1371
MaeII	ACGT	1 cut(s)	1447
MaeIII	GTNAC	3 cut(s)	257, 436, 1237
MalI	GATC	4 cut(s)	501, 876, 921, 1466
MbiI	CCGCTC	1 cut(s)	1292
MboI	GATC	4 cut(s)	499, 874, 919, 1464
MlsI	TGGCCA	1 cut(s)	1022
MluCI	AATT	5 cut(s)	188, 197, 971, 1112, 1193
MluNI	TGGCCA	1 cut(s)	1022
MlyI	GAGTC	2 cut(s)	88, 1073
MmeI	TCCRAC	2 cut(s)	981, 1158
Mox20I	TGGCCA	1 cut(s)	1022
MroI	TCCGGA	1 cut(s)	922
MroXI	GAANNNNTTC	1 cut(s)	851
MscI	TGGCCA	1 cut(s)	1022
MseI	TTAA	2 cut(s)	165, 1526
Msp20I	TGGCCA	1 cut(s)	1022
MspA1I	CMGCKG	1 cut(s)	1424
MspI	CCGG	2 cut(s)	923, 1483
MvnI	CGCG	1 cut(s)	103
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	4 cut(s)	499, 874, 919, 1464
NlaIII	CATG	5 cut(s)	214, 308, 530, 745, 893
NmuCI	GTSAC	2 cut(s)	257, 436
NsbI	TGCGCA	1 cut(s)	555
NspI	RCATGY	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	726
PciI	ACATGT	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	851
PfeI	GAWTC	4 cut(s)	413, 509, 731, 1519
PkrI	GCNGC	4 cut(s)	331, 427, 781, 1423
PleI	GAGTC	2 cut(s)	88, 1073
PpsI	GAGTC	2 cut(s)	88, 1073
PscI	ACATGT	1 cut(s)	210
PspPI	GGNCC	3 cut(s)	404, 1436, 1513
PstI	CTGCAG	2 cut(s)	412, 1312
PstNI	CAGNNNCTG	1 cut(s)	512
PvuII	CAGCTG	1 cut(s)	1424
RsaI	GTAC	2 cut(s)	579, 619
RsaNI	GTAC	2 cut(s)	578, 618
SaqAI	TTAA	2 cut(s)	165, 1526
SatI	GCNGC	4 cut(s)	330, 426, 780, 1422
Sau3AI	GATC	4 cut(s)	499, 874, 919, 1464
Sau96I	GGNCC	3 cut(s)	404, 1436, 1513
SchI	GAGTC	2 cut(s)	88, 1073
SfaNI	GCATC	4 cut(s)	194, 511, 859, 1080
SfcI	CTRYAG	6 cut(s)	408, 432, 504, 1057, 1308, 1347
SinI	GGWCC	3 cut(s)	404, 1436, 1513
SpeI	ACTAGT	1 cut(s)	986
Sse9I	AATT	5 cut(s)	188, 197, 971, 1112, 1193
SseBI	AGGCCT	1 cut(s)	726
SsiI	CCGC	2 cut(s)	872, 1292
SspMI	CTAG	6 cut(s)	98, 573, 669, 987, 1205, 1371
StuI	AGGCCT	1 cut(s)	726
StyI	CCWWGG	4 cut(s)	119, 147, 173, 237
TaaI	ACNGT	1 cut(s)	1348
TaiI	ACGT	1 cut(s)	1450
TaqI	TCGA	1 cut(s)	738
TaqII	GACCGA	1 cut(s)	1453
TasI	AATT	5 cut(s)	188, 197, 971, 1112, 1193
TatI	WGTACW	1 cut(s)	577
TfiI	GAWTC	4 cut(s)	413, 509, 731, 1519
Tru1I	TTAA	2 cut(s)	165, 1526
Tru9I	TTAA	2 cut(s)	165, 1526
TseFI	GTSAC	2 cut(s)	257, 436
TseI	GCWGC	4 cut(s)	329, 425, 779, 1421
Tsp45I	GTSAC	2 cut(s)	257, 436
TspDTI	ATGAA	7 cut(s)	77, 786, 810, 825, 906, 957, 1116
VpaK11BI	GGWCC	3 cut(s)	404, 1436, 1513
XapI	RAATTY	2 cut(s)	188, 971
XceI	RCATGY	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	6 cut(s)	98, 573, 669, 987, 1205, 1371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.