Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

10648404 .. 10650291

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032069

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGACTCCAGGGTGCGTCAAGTGGAGTCTCCCTCAATTCACAAAAGAATTGCAGAAAATGCAAGTTGATGAAATAGAGATTGATATTGCAGTTAACGACAACAATAGAAGCAAACATGGCAAGGAAAACAGCGACGATGACTTTGAGAACCCTCCATCAAAGCATGCAACTACTGCACAGGATGCTACTGCACCAGCTGAAAAGGAAAAGCGTAGAAATGAAGAAGTGACAGCTGATAATGAATCAGAAGGTTTCGAAGATGAACATGAAGACATGACATTAAGAGATTGGGTGGATATGAACAGCATGAATTTTGCGAAAAAGATGGACGAGAATAAAGGAGAGAAGGGATGCAAACAAAAGCCACAAGAAAATGAAACAAACTTTGTCGATCAAGATCAGGATGGAACTGAAGGAGGAGAACCGGATCAAATGGAAATGAATGAAAAAGCTGCTACTGAGGCCAATGATGTTGAAAGGAACAAAAAAGCTGCTACTGAGGATCAAACCCTGAAAAATATTATAGAAGAGATTGTGAATGAAGTTGCAAGGAACGAAAAAGCTGCTACTGAGGCCGATGAAGCTGCTACTGAGGCTGGTGCAAATATTGCGGATCAAATCTTGAAAAACATTGTCGAAGAGATTGTGAATGAAGAGTACAAGAGCCGGTATGATTTGCATTTATATGGTATGATTAGTGAGTATGACGAATTTGGCTATCCAAGCACTGATGAAGAACAGATCAACACAGTGGAGCATTGGCAAGATGTAGCAATGTTGAAACAAGATATGGCGGGAAGTGCTATCAAGAGTTGCAAGAGGAAGCAAGCTTATATAGAGAGATTGTGGGATGAAAAAGAAGAAGTGATAGAAAAAGATGAAGAGGCCAATGAAGATGCTGCTGCTGCTGTTCCTGCTCATGCTACTGCTCCTACAAATGAACCAAGGACACGATCAGCGATAAAGAGAATCAAAGAAATAACCGATCGGAAAGAGAAGCAACTAGAAGGTTTTGAGGTGCAGAAACCATCGAAGAAACAGAGGAAGAAGAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

353

Amino Acids

40.12

Weight (kDa)

4.62

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	611, 794
AclWI	GGATC	3 cut(s)	435, 510, 621
AcsI	RAATTY	2 cut(s)	310, 710
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	1 cut(s)	659
AgsI	TTSAA	3 cut(s)	476, 625, 781
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	7 cut(s)	197, 233, 452, 491, 563, 584, 830
AluI	AGCT	7 cut(s)	197, 233, 452, 491, 563, 584, 830
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	3 cut(s)	435, 510, 621
AoxI	GGCC	3 cut(s)	462, 573, 885
ApeKI	GCWGC	7 cut(s)	452, 491, 563, 584, 899, 902, 905
ApoI	RAATTY	2 cut(s)	310, 710
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
AsuII	TTCGAA	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	7 cut(s)	439, 478, 550, 571, 886, 889, 892
BccI	CCATC	4 cut(s)	163, 319, 398, 1036
BcgI	CGANNNNNNTGC	4 cut(s)	545, 566, 579, 600
BciT130I	CCWGG	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	1004
BisI	GCNGC	7 cut(s)	453, 492, 564, 585, 900, 903, 906
BlsI	GCNGC	7 cut(s)	454, 493, 565, 586, 901, 904, 907
Bme1390I	CCNGG	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	3 cut(s)	172, 341, 886
BpiI	GAAGAC	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
Bpu14I	TTCGAA	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	8, 944
BsaWI	WCCGGW	1 cut(s)	424
Bse118I	RCCGGY	1 cut(s)	666
Bse3DI	GCAATG	1 cut(s)	780
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	8, 944
BseGI	GGATG	4 cut(s)	187, 356, 409, 856
BseJI	GATNNNNATC	1 cut(s)	396
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	4 cut(s)	450, 489, 561, 582
BseRI	GAGGAG	1 cut(s)	432
BseXI	GCAGC	7 cut(s)	439, 478, 550, 571, 886, 889, 892
BsgI	GTGCAG	3 cut(s)	159, 174, 1040
Bsh1285I	CGRYCG	1 cut(s)	988
BshFI	GGCC	3 cut(s)	464, 575, 887
BsiEI	CGRYCG	1 cut(s)	988
BsiSI	CCGG	2 cut(s)	425, 667
BsmAI	GTCTC	1 cut(s)	32
BsnI	GGCC	3 cut(s)	464, 575, 887
Bsp119I	TTCGAA	1 cut(s)	255
Bsp143I	GATC	8 cut(s)	391, 397, 427, 502, 613, 741, 953, 985
BspACI	CCGC	2 cut(s)	611, 794
BspANI	GGCC	3 cut(s)	464, 575, 887
BspCNI	CTCAG	4 cut(s)	451, 490, 562, 583
BspPI	GGATC	3 cut(s)	435, 510, 621
BspQI	GCTCTTC	1 cut(s)	1043
BspT104I	TTCGAA	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	780
BsrFI	RCCGGY	1 cut(s)	666
BssAI	RCCGGY	1 cut(s)	666
BssECI	CCNNGG	2 cut(s)	8, 944
BssMI	GATC	8 cut(s)	391, 397, 427, 502, 613, 741, 953, 985
BssT1I	CCWWGG	1 cut(s)	944
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	5 cut(s)	522, 633, 648, 876, 1043
BstAPI	GCANNNNNTGC	4 cut(s)	58, 173, 182, 608
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	165, 828
BstDEI	CTNAG	4 cut(s)	459, 498, 570, 591
BstF5I	GGATG	4 cut(s)	187, 356, 409, 856
BstKTI	GATC	8 cut(s)	394, 400, 430, 505, 616, 744, 956, 988
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	8 cut(s)	391, 397, 427, 502, 613, 741, 953, 985
BstMCI	CGRYCG	1 cut(s)	988
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	7
BstV1I	GCAGC	7 cut(s)	439, 478, 550, 571, 886, 889, 892
BstV2I	GAAGAC	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	464, 575, 887
BtsCI	GGATG	4 cut(s)	187, 356, 409, 856
BtsIMutI	CAGTG	2 cut(s)	726, 756
Cac8I	GCNNGC	2 cut(s)	165, 828
Cfr10I	RCCGGY	1 cut(s)	666
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	6 cut(s)	116, 164, 266, 274, 307, 920
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	4 cut(s)	459, 498, 570, 591
DpnI	GATC	8 cut(s)	393, 399, 429, 504, 615, 743, 955, 987
DpnII	GATC	8 cut(s)	391, 397, 427, 502, 613, 741, 953, 985
Eam1104I	CTCTTC	5 cut(s)	522, 633, 648, 876, 1043
EarI	CTCTTC	5 cut(s)	522, 633, 648, 876, 1043
Eco130I	CCWWGG	1 cut(s)	944
Eco57I	CTGAAG	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	944
ErhI	CCWWGG	1 cut(s)	944
FaeI	CATG	6 cut(s)	119, 167, 269, 277, 310, 923
FatI	CATG	6 cut(s)	115, 163, 265, 273, 306, 919
FauI	CCCGC	1 cut(s)	787
Fnu4HI	GCNGC	7 cut(s)	453, 492, 564, 585, 900, 903, 906
FokI	GGATG	4 cut(s)	194, 363, 416, 863
Fsp4HI	GCNGC	7 cut(s)	453, 492, 564, 585, 900, 903, 906
FspBI	CTAG	1 cut(s)	1004
GluI	GCNGC	7 cut(s)	453, 492, 564, 585, 900, 903, 906
HaeIII	GGCC	3 cut(s)	464, 575, 887
HapII	CCGG	2 cut(s)	425, 667
HgaI	GACGC	1 cut(s)	4
Hin1II	CATG	6 cut(s)	119, 167, 269, 277, 310, 923
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	828
HinfI	GANTC	4 cut(s)	4, 25, 242, 969
HpaI	GTTAAC	1 cut(s)	94
HpaII	CCGG	2 cut(s)	425, 667
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	247, 990
Hpy188III	TCNNGA	4 cut(s)	395, 401, 622, 808
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	4 cut(s)	242, 340, 407, 1001
HpyCH4III	ACNGT	1 cut(s)	751
HpyF3I	CTNAG	4 cut(s)	459, 498, 570, 591
Hsp92II	CATG	6 cut(s)	119, 167, 269, 277, 310, 923
KspAI	GTTAAC	1 cut(s)	94
Kzo9I	GATC	8 cut(s)	391, 397, 427, 502, 613, 741, 953, 985
LguI	GCTCTTC	1 cut(s)	1043
LmnI	GCTCC	2 cut(s)	754, 934
LpnPI	CCDG	9 cut(s)	21, 164, 207, 386, 438, 524, 582, 680, 927
Lsp1109I	GCAGC	7 cut(s)	439, 478, 550, 571, 886, 889, 892
LweI	GCATC	3 cut(s)	172, 341, 886
MaeI	CTAG	1 cut(s)	1004
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	8 cut(s)	393, 399, 429, 504, 615, 743, 955, 987
MboI	GATC	8 cut(s)	391, 397, 427, 502, 613, 741, 953, 985
MluCI	AATT	5 cut(s)	35, 47, 310, 710, 1054
MlyI	GAGTC	1 cut(s)	34
MseI	TTAA	3 cut(s)	93, 281, 1057
MslI	CAYNNNNRTG	1 cut(s)	684
MspA1I	CMGCKG	2 cut(s)	197, 233
MspI	CCGG	2 cut(s)	425, 667
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
NdeII	GATC	8 cut(s)	391, 397, 427, 502, 613, 741, 953, 985
NlaIII	CATG	6 cut(s)	119, 167, 269, 277, 310, 923
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	255
PaeI	GCATGC	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	1043
PfeI	GAWTC	2 cut(s)	242, 969
PkrI	GCNGC	7 cut(s)	454, 493, 565, 586, 901, 904, 907
Ple19I	CGATCG	1 cut(s)	988
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PvuI	CGATCG	1 cut(s)	988
PvuII	CAGCTG	2 cut(s)	197, 233
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
RseI	CAYNNNNRTG	1 cut(s)	684
SapI	GCTCTTC	1 cut(s)	1043
SaqAI	TTAA	3 cut(s)	93, 281, 1057
SatI	GCNGC	7 cut(s)	453, 492, 564, 585, 900, 903, 906
Sau3AI	GATC	8 cut(s)	391, 397, 427, 502, 613, 741, 953, 985
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	9
SfaNI	GCATC	3 cut(s)	172, 341, 886
SfuI	TTCGAA	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	684
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	5 cut(s)	35, 47, 310, 710, 1054
SsiI	CCGC	2 cut(s)	611, 794
SspI	AATATT	2 cut(s)	520, 607
SspMI	CTAG	1 cut(s)	1004
StyD4I	CCNGG	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	944
TaaI	ACNGT	1 cut(s)	751
TaqI	TCGA	4 cut(s)	255, 390, 636, 1031
TasI	AATT	5 cut(s)	35, 47, 310, 710, 1054
TatI	WGTACW	1 cut(s)	657
TfiI	GAWTC	2 cut(s)	242, 969
Tru1I	TTAA	3 cut(s)	93, 281, 1057
Tru9I	TTAA	3 cut(s)	93, 281, 1057
TscAI	CASTG	2 cut(s)	733, 756
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	7 cut(s)	452, 491, 563, 584, 899, 902, 905
Tsp45I	GTSAC	1 cut(s)	226
TspRI	CASTG	2 cut(s)	733, 756
XapI	RAATTY	2 cut(s)	310, 710
XceI	RCATGY	1 cut(s)	167
XspI	CTAG	1 cut(s)	1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.