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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 562 |
| AclWI | GGATC | 1 cut(s) | 575 |
| AcsI | RAATTY | 1 cut(s) | 473 |
| AdeI | CACNNNGTG | 1 cut(s) | 286 |
| AgsI | TTSAA | 4 cut(s) | 73, 349, 377, 469 |
| AjiI | CACGTC | 2 cut(s) | 286, 517 |
| AluBI | AGCT | 4 cut(s) | 310, 380, 460, 554 |
| AluI | AGCT | 4 cut(s) | 310, 380, 460, 554 |
| Alw26I | GTCTC | 1 cut(s) | 70 |
| AlwI | GGATC | 1 cut(s) | 575 |
| AoxI | GGCC | 1 cut(s) | 232 |
| ApeKI | GCWGC | 1 cut(s) | 307 |
| ApoI | RAATTY | 1 cut(s) | 473 |
| AsuHPI | GGTGA | 1 cut(s) | 28 |
| BanI | GGYRCC | 1 cut(s) | 562 |
| BbvI | GCAGC | 1 cut(s) | 319 |
| BccI | CCATC | 2 cut(s) | 203, 322 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 296, 330 |
| BclI | TGATCA | 1 cut(s) | 598 |
| BcoDI | GTCTC | 1 cut(s) | 70 |
| BisI | GCNGC | 1 cut(s) | 308 |
| BlsI | GCNGC | 1 cut(s) | 309 |
| BmgBI | CACGTC | 2 cut(s) | 286, 517 |
| BmiI | GGNNCC | 1 cut(s) | 564 |
| BmsI | GCATC | 2 cut(s) | 345, 423 |
| Bse3DI | GCAATG | 1 cut(s) | 455 |
| BseGI | GGATG | 1 cut(s) | 601 |
| BseMI | GCAATG | 1 cut(s) | 455 |
| BseRI | GAGGAG | 2 cut(s) | 200, 203 |
| BseXI | GCAGC | 1 cut(s) | 319 |
| BshFI | GGCC | 1 cut(s) | 234 |
| BshNI | GGYRCC | 1 cut(s) | 562 |
| BsmAI | GTCTC | 1 cut(s) | 70 |
| BsnI | GGCC | 1 cut(s) | 234 |
| Bsp143I | GATC | 4 cut(s) | 62, 424, 580, 598 |
| BspANI | GGCC | 1 cut(s) | 234 |
| BspLI | GGNNCC | 1 cut(s) | 564 |
| BspPI | GGATC | 1 cut(s) | 575 |
| BspT107I | GGYRCC | 1 cut(s) | 562 |
| BsrDI | GCAATG | 1 cut(s) | 455 |
| BssMI | GATC | 4 cut(s) | 62, 424, 580, 598 |
| Bst4CI | ACNGT | 1 cut(s) | 562 |
| Bst6I | CTCTTC | 4 cut(s) | 68, 108, 177, 195 |
| BstC8I | GCNNGC | 1 cut(s) | 462 |
| BstDEI | CTNAG | 2 cut(s) | 402, 585 |
| BstF5I | GGATG | 1 cut(s) | 601 |
| BstKTI | GATC | 4 cut(s) | 65, 427, 583, 601 |
| BstMAI | GTCTC | 1 cut(s) | 70 |
| BstMBI | GATC | 4 cut(s) | 62, 424, 580, 598 |
| BstNSI | RCATGY | 1 cut(s) | 39 |
| BstV1I | GCAGC | 1 cut(s) | 319 |
| BsuRI | GGCC | 1 cut(s) | 234 |
| BtrI | CACGTC | 2 cut(s) | 286, 517 |
| BtsCI | GGATG | 1 cut(s) | 601 |
| Cac8I | GCNNGC | 1 cut(s) | 462 |
| CviAII | CATG | 1 cut(s) | 36 |
| CviJI | RGCY | 8 cut(s) | 234, 310, 341, 380, 460, 464, 554, 592 |
| CviKI_1 | RGCY | 8 cut(s) | 234, 310, 341, 380, 460, 464, 554, 592 |
| DdeI | CTNAG | 2 cut(s) | 402, 585 |
| DpnI | GATC | 4 cut(s) | 64, 426, 582, 600 |
| DpnII | GATC | 4 cut(s) | 62, 424, 580, 598 |
| DraIII | CACNNNGTG | 1 cut(s) | 286 |
| Eam1104I | CTCTTC | 4 cut(s) | 68, 108, 177, 195 |
| EarI | CTCTTC | 4 cut(s) | 68, 108, 177, 195 |
| EcoT22I | ATGCAT | 1 cut(s) | 438 |
| FaeI | CATG | 1 cut(s) | 39 |
| FaiI | YATR | 8 cut(s) | 37, 247, 258, 269, 294, 303, 384, 438 |
| FatI | CATG | 1 cut(s) | 35 |
| FbaI | TGATCA | 1 cut(s) | 598 |
| Fnu4HI | GCNGC | 1 cut(s) | 308 |
| FokI | GGATG | 1 cut(s) | 588 |
| Fsp4HI | GCNGC | 1 cut(s) | 308 |
| GluI | GCNGC | 1 cut(s) | 308 |
| HaeIII | GGCC | 1 cut(s) | 234 |
| Hin1II | CATG | 1 cut(s) | 39 |
| HindIII | AAGCTT | 1 cut(s) | 378 |
| HphI | GGTGA | 1 cut(s) | 28 |
| Hpy188I | TCNGA | 2 cut(s) | 424, 514 |
| Hpy188III | TCNNGA | 3 cut(s) | 66, 317, 428 |
| Hpy99I | CGWCG | 1 cut(s) | 287 |
| HpyAV | CCTTC | 2 cut(s) | 161, 286 |
| HpyCH4III | ACNGT | 1 cut(s) | 562 |
| HpyCH4IV | ACGT | 2 cut(s) | 285, 516 |
| HpyCH4V | TGCA | 5 cut(s) | 264, 416, 436, 448, 520 |
| HpyF3I | CTNAG | 2 cut(s) | 402, 585 |
| HpySE526I | ACGT | 2 cut(s) | 285, 516 |
| Hsp92II | CATG | 1 cut(s) | 39 |
| Ksp22I | TGATCA | 1 cut(s) | 598 |
| Kzo9I | GATC | 4 cut(s) | 62, 424, 580, 598 |
| LmnI | GCTCC | 1 cut(s) | 212 |
| LpnPI | CCDG | 4 cut(s) | 17, 145, 248, 446 |
| Lsp1109I | GCAGC | 1 cut(s) | 319 |
| LweI | GCATC | 2 cut(s) | 345, 423 |
| MaeII | ACGT | 2 cut(s) | 285, 516 |
| MalI | GATC | 4 cut(s) | 64, 426, 582, 600 |
| MboI | GATC | 4 cut(s) | 62, 424, 580, 598 |
| MluCI | AATT | 1 cut(s) | 473 |
| MnlI | CCTC | 7 cut(s) | 85, 109, 178, 181, 184, 218, 615 |
| Mph1103I | ATGCAT | 1 cut(s) | 438 |
| MseI | TTAA | 2 cut(s) | 335, 477 |
| NdeII | GATC | 4 cut(s) | 62, 424, 580, 598 |
| NlaIII | CATG | 1 cut(s) | 39 |
| NlaIV | GGNNCC | 1 cut(s) | 564 |
| NmeAIII | GCCGAG | 1 cut(s) | 367 |
| NsiI | ATGCAT | 1 cut(s) | 438 |
| NspI | RCATGY | 1 cut(s) | 39 |
| PkrI | GCNGC | 1 cut(s) | 309 |
| PspN4I | GGNNCC | 1 cut(s) | 564 |
| SaqAI | TTAA | 2 cut(s) | 335, 477 |
| SatI | GCNGC | 1 cut(s) | 308 |
| Sau3AI | GATC | 4 cut(s) | 62, 424, 580, 598 |
| SfaNI | GCATC | 2 cut(s) | 345, 423 |
| Sse9I | AATT | 1 cut(s) | 473 |
| TaaI | ACNGT | 1 cut(s) | 562 |
| TaiI | ACGT | 2 cut(s) | 288, 519 |
| TaqI | TCGA | 1 cut(s) | 427 |
| TasI | AATT | 1 cut(s) | 473 |
| Tru1I | TTAA | 2 cut(s) | 335, 477 |
| Tru9I | TTAA | 2 cut(s) | 335, 477 |
| TseI | GCWGC | 1 cut(s) | 307 |
| TspDTI | ATGAA | 4 cut(s) | 138, 159, 192, 281 |
| XapI | RAATTY | 1 cut(s) | 473 |
| XceI | RCATGY | 1 cut(s) | 39 |
| Zsp2I | ATGCAT | 1 cut(s) | 438 |