Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000087.1

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Reverse (-)

127717 .. 130616

Gene Structure 2900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000087.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

atggctccaatggaggttgataaggtgcaaaagggtgatgatacaaggaataatcacacaaaaccagtgagaagaaaagctctggcatgtaggataaagtttccaagcactagagtaaagagacaaaagcataaagaagtggaacaagacagggaagaagaggaggatgaagaaaatgaggaagctgaggatgaaaaagacaaagaagaacaagacggggtagaaacggataatgaagaagaggaggaggaagaagaaaagaatgatggagcaagaaacagtggcaaagaccagaaacaatcatattgccaatacaggtgcaatatgattgccttccatgatgtgcttcataaagtgtatgagcagctcaatcgtgaagaaaagatgagattgaaagctgagttgaagaagacgccattttggaacttgattgaagcttatgacaagggattgatgactaagaacacaactgcaaaatcagatcgagagatgcataggttagtgcaatgctacaagctggctttgaagaaatttaagtttggaaacaagttggcagaaataagtgtatcggatgtgcactacattttgggtttgccaaaccaaaaatcagctctcacggtgccaaacccaatagatgatcctaagaagccgactgatcatcctcttgttcaaaggtactttgcaaatgaccgaaggataaaaaaagcaagaatcatgagctgtattgatgagcagttaagggaaaaagctccggggtggatagagaacatgacaaagttgctgctactgcacctgttcatcacactattgtttgcaagctcggggtctaccttaggatggagctttgtgaaatgcatcactgatattgagacaatgaggagatataactgggcaagagctgttagagactatttgttattgtgtttgcaagctgtcacaatgggaaaagcaaggcaaatcagtgggtgtgtagcattaatcccgtattggatatgcgagaggagtactatgcttgttgaaattaaaggcagagaagcaatgactccacggtgcgtcaagtggagtctccctcaattcacaaaagaattgcagaaaatgcaagttgatgacatagaggtgatggatacgctactgtctgctactatatatgcttatgctactaacttgaaaaatattttattgcagattgataatgcagttgccgacaacaatagaagcaaacatggcaaggaaaacagtgacgatgactttgagaaccctccatcaaagcatgctgctactgcacaggcaaaggggcagaaaagacaaagagaagaaaacaaggccacagtagctgccaaaaaaccagccaaaaagcggaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

454

Amino Acids

52.66

Weight (kDa)

8.67

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	619
AccI	GTMKAC	1 cut(s)	827
AciI	CCGC	1 cut(s)	1357
AclWI	GGATC	1 cut(s)	632
AcsI	RAATTY	1 cut(s)	530
AcyI	GRCGYC	1 cut(s)	413
AfaI	GTAC	2 cut(s)	677, 1006
AfiI	CCNNNNNNNGG	2 cut(s)	837, 1356
AgsI	TTSAA	7 cut(s)	394, 406, 434, 526, 671, 1019, 1168
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	4 cut(s)	115, 863, 900, 1070
Alw44I	GTGCAC	1 cut(s)	575
AlwI	GGATC	1 cut(s)	632
AlwNI	CAGNNNCTG	1 cut(s)	1334
Ama87I	CYCGRG	1 cut(s)	820
AoxI	GGCC	1 cut(s)	1323
ApaLI	GTGCAC	1 cut(s)	575
ApeKI	GCWGC	4 cut(s)	364, 781, 1274, 1334
ApoI	RAATTY	1 cut(s)	530
ArsI	GACNNNNNNTTYG	2 cut(s)	1232, 1264
AseI	ATTAAT	1 cut(s)	977
AsuC2I	CCSGG	1 cut(s)	753
AsuHPI	GGTGA	2 cut(s)	47, 1129
AvaI	CYCGRG	1 cut(s)	820
AxyI	CCTNAGG	1 cut(s)	832
BaeGI	GKGCMC	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	579
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	376, 768, 1261, 1321
BccI	CCATC	4 cut(s)	260, 831, 1114, 1270
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciVI	GTATCC	1 cut(s)	1117
BclI	TGATCA	1 cut(s)	655
BcnI	CCSGG	1 cut(s)	753
BcoDI	GTCTC	4 cut(s)	115, 863, 900, 1070
BfaI	CTAG	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	1117
BisI	GCNGC	4 cut(s)	365, 782, 1275, 1335
BlsI	GCNGC	4 cut(s)	366, 783, 1276, 1336
BmcAI	AGTACT	1 cut(s)	1006
Bme1390I	CCNGG	1 cut(s)	753
BmeT110I	CYCGRG	1 cut(s)	820
BmiI	GGNNCC	2 cut(s)	6, 621
BmrFI	CCNGG	1 cut(s)	753
BmrI	ACTGGG	1 cut(s)	898
BmsI	GCATC	2 cut(s)	480, 864
BmuI	ACTGGG	1 cut(s)	898
BpiI	GAAGAC	1 cut(s)	416
BplI	GAGNNNNNCTC	2 cut(s)	1054, 1086
Bpu10I	CCTNAGC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	753
BsaHI	GRCGYC	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	752, 1046
Bsc4I	CCNNNNNNNGG	2 cut(s)	837, 1356
Bse1I	ACTGG	2 cut(s)	65, 893
Bse21I	CCTNAGG	1 cut(s)	832
Bse3DI	GCAATG	2 cut(s)	512, 1044
BseDI	CCNNGG	2 cut(s)	752, 1046
BseGI	GGATG	5 cut(s)	172, 196, 577, 658, 842
BseLI	CCNNNNNNNGG	2 cut(s)	837, 1356
BseMI	GCAATG	2 cut(s)	512, 1044
BseMII	CTCAG	2 cut(s)	177, 390
BseNI	ACTGG	2 cut(s)	65, 893
BseRI	GAGGAG	5 cut(s)	176, 257, 260, 892, 1015
BseSI	GKGCMC	1 cut(s)	579
BseXI	GCAGC	4 cut(s)	376, 768, 1261, 1321
BsgI	GTGCAG	2 cut(s)	773, 1266
BshFI	GGCC	1 cut(s)	1325
BshNI	GGYRCC	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	579
BsiHKCI	CYCGRG	1 cut(s)	820
BsiSI	CCGG	1 cut(s)	752
BslI	CCNNNNNNNGG	2 cut(s)	837, 1356
BsmAI	GTCTC	4 cut(s)	115, 863, 900, 1070
BsnI	GGCC	1 cut(s)	1325
BsoBI	CYCGRG	1 cut(s)	820
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	3 cut(s)	481, 637, 655
BspACI	CCGC	1 cut(s)	1357
BspANI	GGCC	1 cut(s)	1325
BspCNI	CTCAG	2 cut(s)	178, 391
BspHI	TCATGA	1 cut(s)	714
BspLI	GGNNCC	2 cut(s)	6, 621
BspPI	GGATC	1 cut(s)	632
BspT107I	GGYRCC	1 cut(s)	619
BsrDI	GCAATG	2 cut(s)	512, 1044
BsrI	ACTGG	2 cut(s)	65, 893
BssECI	CCNNGG	2 cut(s)	752, 1046
BssMI	GATC	3 cut(s)	481, 637, 655
BssNI	GRCGYC	1 cut(s)	413
Bst4CI	ACNGT	6 cut(s)	281, 619, 1050, 1134, 1238, 1330
Bst6I	CTCTTC	2 cut(s)	153, 234
BstACI	GRCGYC	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	1096
BstC8I	GCNNGC	4 cut(s)	519, 817, 930, 1272
BstDEI	CTNAG	5 cut(s)	186, 399, 459, 642, 832
BstDSI	CCRYGG	1 cut(s)	1046
BstF5I	GGATG	5 cut(s)	172, 196, 577, 658, 842
BstKTI	GATC	3 cut(s)	484, 640, 658
BstMAI	GTCTC	4 cut(s)	115, 863, 900, 1070
BstMBI	GATC	3 cut(s)	481, 637, 655
BstMWI	GCNNNNNNNGC	5 cut(s)	787, 1096, 1224, 1280, 1331
BstNSI	RCATGY	2 cut(s)	90, 1274
BstSCI	CCNGG	1 cut(s)	751
BstSLI	GKGCMC	1 cut(s)	579
BstV1I	GCAGC	4 cut(s)	376, 768, 1261, 1321
BstV2I	GAAGAC	1 cut(s)	416
Bsu36I	CCTNAGG	1 cut(s)	832
BsuI	GTATCC	1 cut(s)	1117
BsuRI	GGCC	1 cut(s)	1325
BtgI	CCRYGG	1 cut(s)	1046
BtsCI	GGATG	5 cut(s)	172, 196, 577, 658, 842
BtsIMutI	CAGTG	5 cut(s)	72, 286, 858, 967, 1243
Cac8I	GCNNGC	4 cut(s)	519, 817, 930, 1272
CaiI	CAGNNNCTG	1 cut(s)	1334
CciI	TCATGA	1 cut(s)	714
CseI	GACGC	2 cut(s)	421, 1042
Csp6I	GTAC	2 cut(s)	676, 1005
CviAII	CATG	6 cut(s)	87, 338, 715, 769, 1223, 1271
CviQI	GTAC	2 cut(s)	676, 1005
DdeI	CTNAG	5 cut(s)	186, 399, 459, 642, 832
DpnI	GATC	3 cut(s)	483, 639, 657
DpnII	GATC	3 cut(s)	481, 637, 655
Eam1104I	CTCTTC	2 cut(s)	153, 234
EarI	CTCTTC	2 cut(s)	153, 234
Eco81I	CCTNAGG	1 cut(s)	832
Eco88I	CYCGRG	1 cut(s)	820
EcoT22I	ATGCAT	2 cut(s)	495, 857
FaeI	CATG	6 cut(s)	90, 341, 718, 772, 1226, 1274
FatI	CATG	6 cut(s)	86, 337, 714, 768, 1222, 1270
FbaI	TGATCA	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	827
Fnu4HI	GCNGC	4 cut(s)	365, 782, 1275, 1335
FokI	GGATG	5 cut(s)	179, 203, 584, 645, 849
Fsp4HI	GCNGC	4 cut(s)	365, 782, 1275, 1335
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	4 cut(s)	365, 782, 1275, 1335
HaeIII	GGCC	1 cut(s)	1325
HapII	CCGG	1 cut(s)	752
HgaI	GACGC	2 cut(s)	421, 1042
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	6 cut(s)	90, 341, 718, 772, 1226, 1274
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	3 cut(s)	711, 1042, 1063
HpaII	CCGG	1 cut(s)	752
HphI	GGTGA	2 cut(s)	47, 1129
Hpy166II	GTNNAC	2 cut(s)	577, 828
Hpy188I	TCNGA	2 cut(s)	481, 571
Hpy188III	TCNNGA	3 cut(s)	374, 485, 715
Hpy8I	GTNNAC	2 cut(s)	577, 828
HpyAV	CCTTC	2 cut(s)	343, 687
HpyCH4III	ACNGT	6 cut(s)	281, 619, 1050, 1134, 1238, 1330
HpyF10VI	GCNNNNNNNGC	5 cut(s)	787, 1096, 1224, 1280, 1331
HpyF3I	CTNAG	5 cut(s)	186, 399, 459, 642, 832
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	6 cut(s)	90, 341, 718, 772, 1226, 1274
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	3 cut(s)	481, 637, 655
LmnI	GCTCC	4 cut(s)	10, 269, 754, 840
Lsp1109I	GCAGC	4 cut(s)	376, 768, 1261, 1321
LweI	GCATC	2 cut(s)	480, 864
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	934, 1238
MalI	GATC	3 cut(s)	483, 639, 657
MboI	GATC	3 cut(s)	481, 637, 655
MhlI	GDGCHC	1 cut(s)	579
MluCI	AATT	4 cut(s)	530, 1020, 1073, 1085
MlyI	GAGTC	2 cut(s)	1036, 1072
Mph1103I	ATGCAT	2 cut(s)	495, 857
MseI	TTAA	4 cut(s)	534, 737, 977, 1023
MslI	CAYNNNNRTG	1 cut(s)	1115
MspI	CCGG	1 cut(s)	752
MspR9I	CCNGG	1 cut(s)	753
MwoI	GCNNNNNNNGC	5 cut(s)	787, 1096, 1224, 1280, 1331
NciI	CCSGG	1 cut(s)	753
NdeII	GATC	3 cut(s)	481, 637, 655
NlaIII	CATG	6 cut(s)	90, 341, 718, 772, 1226, 1274
NlaIV	GGNNCC	2 cut(s)	6, 621
NmuCI	GTSAC	2 cut(s)	934, 1238
NsiI	ATGCAT	2 cut(s)	495, 857
NspI	RCATGY	2 cut(s)	90, 1274
PaeI	GCATGC	1 cut(s)	1274
PagI	TCATGA	1 cut(s)	714
PfeI	GAWTC	1 cut(s)	711
PkrI	GCNGC	4 cut(s)	366, 783, 1276, 1336
PleI	GAGTC	2 cut(s)	1036, 1071
PpsI	GAGTC	2 cut(s)	1036, 1071
PshBI	ATTAAT	1 cut(s)	977
PspN4I	GGNNCC	2 cut(s)	6, 621
PstNI	CAGNNNCTG	1 cut(s)	1334
RsaI	GTAC	2 cut(s)	677, 1006
RsaNI	GTAC	2 cut(s)	676, 1005
RseI	CAYNNNNRTG	1 cut(s)	1115
SaqAI	TTAA	4 cut(s)	534, 737, 977, 1023
SatI	GCNGC	4 cut(s)	365, 782, 1275, 1335
Sau3AI	GATC	3 cut(s)	481, 637, 655
ScaI	AGTACT	1 cut(s)	1006
SchI	GAGTC	2 cut(s)	1036, 1072
ScrFI	CCNGG	1 cut(s)	753
SduI	GDGCHC	1 cut(s)	579
SfaNI	GCATC	2 cut(s)	480, 864
SmiMI	CAYNNNNRTG	1 cut(s)	1115
SphI	GCATGC	1 cut(s)	1274
Sse9I	AATT	4 cut(s)	530, 1020, 1073, 1085
SsiI	CCGC	1 cut(s)	1357
SspI	AATATT	1 cut(s)	1174
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	751
TaaI	ACNGT	6 cut(s)	281, 619, 1050, 1134, 1238, 1330
TaqI	TCGA	1 cut(s)	484
TaqII	GACCGA	1 cut(s)	705
TasI	AATT	4 cut(s)	530, 1020, 1073, 1085
TatI	WGTACW	1 cut(s)	1004
TfiI	GAWTC	1 cut(s)	711
Tru1I	TTAA	4 cut(s)	534, 737, 977, 1023
Tru9I	TTAA	4 cut(s)	534, 737, 977, 1023
TscAI	CASTG	5 cut(s)	72, 286, 865, 967, 1243
TseFI	GTSAC	2 cut(s)	934, 1238
TseI	GCWGC	4 cut(s)	364, 781, 1274, 1334
Tsp45I	GTSAC	2 cut(s)	934, 1238
TspDTI	ATGAA	5 cut(s)	183, 207, 249, 338, 787
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	5 cut(s)	72, 286, 865, 967, 1243
VneI	GTGCAC	1 cut(s)	575
VspI	ATTAAT	1 cut(s)	977
XapI	RAATTY	1 cut(s)	530
XceI	RCATGY	2 cut(s)	90, 1274
XmiI	GTMKAC	1 cut(s)	827
XspI	CTAG	1 cut(s)	111
ZrmI	AGTACT	1 cut(s)	1006
Zsp2I	ATGCAT	2 cut(s)	495, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.