Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Reverse (-)

39355287 .. 39357225

Gene Structure 1939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008796

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGCTTATTGAAATTAAAGGCAGAGAAGCAATGACTCCAGGGTGCGTCAAGTGGAGTCTCCCTCAATTCACAAAAGAATTGCAGAAAATGCAAGTTGATGAAATAGAGGTGATGGATATGCTACTGTCTGCTACTGTGCAATATGCTACTAACTTGAAAAATATTTTATTGCAGATTGATAATGCAGTTGCCAACAACAATAGAAGCAAACATGGCAAGGAAAACAGCGACGATGACTTTGAGAACCCTCCATCAAAGCATGCTGCTACTGCACAGGCAAAGGGGCAGAAAAGACAAAGAGAAGGAAAGGCCACAATGGACATGAACAACATGAATTTTGCGAAAAAGATGGACGAGAATAAAGGAGATGAAGGGATGCAAACGAAAGGCACAAGTGGAGTAAATGTCAATGATATGGATTTGGGTGCAACTGAGGAAGAAGAGGATGCTGCGGATGGTATTAGAGATGACTTTAGCTTTGACACTGGATTGGGGGGGGGGGGGGGGGATCGGAATGGAACTAAAGAAGGAGAACCAGATCAAATAGAAAGGAACGAAAAAGCTGCTACTGAGGCCGATGCAAATTTTACGGATCAAACCCTGAAAAATATTATAGAAGAGATTGTGAATGAAGCTGCAAGGAACAAAAAAGCTGCTACTGAGGCCAATGAAGCTGCAAGGAACGACAAAGTTGCTACTGAGGCTGGTGCAAATATTACAGATCAAATCTTGAAAAACATTGTAGAAGAGATTGTGAATGAAGAGTACAAGAGCAGGAATGATCCGGCTTGGTTCGAGGAATGGGAAGACTTGTTGCAGATGCAAAGGATAGAAAAAGATGAAGAGGCTAATGAAGATGCTGCTGCTGCTCCTCCTGCTGTTCCTGCTCATGCTACTGCTCCTACAAATGAACCGAGGACACGATCAGCGATAACGAGAATCAAAGAAAGAACCGATCGGAAAGAGAAGCAACTAGAAGGTTTTGAGGTGCAGAAACCATCGAAGAAACAGAGGAAGAAGAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

343

Amino Acids

38.04

Weight (kDa)

4.82

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	3 cut(s)	516, 600, 776
AcsI	RAATTY	2 cut(s)	334, 583
AfaI	GTAC	1 cut(s)	767
AgsI	TTSAA	3 cut(s)	11, 157, 733
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	5 cut(s)	477, 563, 635, 653, 674
AluI	AGCT	5 cut(s)	477, 563, 635, 653, 674
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	3 cut(s)	516, 600, 776
AoxI	GGCC	3 cut(s)	309, 573, 663
ApeKI	GCWGC	9 cut(s)	263, 449, 563, 635, 653, 674, 860, 863, 866
ApoI	RAATTY	2 cut(s)	334, 583
ArsI	GACNNNNNNTTYG	4 cut(s)	221, 253, 461, 493
AsuHPI	GGTGA	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	813
BbvI	GCAGC	9 cut(s)	250, 436, 550, 622, 640, 661, 847, 850, 853
BccI	CCATC	5 cut(s)	106, 259, 343, 449, 1006
BcgI	CGANNNNNNTGC	4 cut(s)	545, 579, 674, 708
BciT130I	CCWGG	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	974
BisI	GCNGC	9 cut(s)	264, 450, 564, 636, 654, 675, 861, 864, 867
BlsI	GCNGC	9 cut(s)	265, 451, 565, 637, 655, 676, 862, 865, 868
Bme1390I	CCNGG	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	5 cut(s)	366, 436, 568, 810, 847
BpiI	GAAGAC	1 cut(s)	813
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpmI	CTGGAG	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	38, 914
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bse1I	ACTGG	1 cut(s)	490
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	38, 914
BseGI	GGATG	3 cut(s)	381, 451, 460
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	4 cut(s)	423, 561, 651, 690
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	1 cut(s)	861
BseXI	GCAGC	9 cut(s)	250, 436, 550, 622, 640, 661, 847, 850, 853
BsgI	GTGCAG	2 cut(s)	255, 1010
Bsh1285I	CGRYCG	1 cut(s)	958
BshFI	GGCC	3 cut(s)	311, 575, 665
BsiEI	CGRYCG	1 cut(s)	958
BsiSI	CCGG	1 cut(s)	785
BsmAI	GTCTC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	311, 575, 665
Bsp143I	GATC	7 cut(s)	508, 538, 592, 721, 781, 923, 955
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	3 cut(s)	311, 575, 665
BspCNI	CTCAG	4 cut(s)	424, 562, 652, 691
BspPI	GGATC	3 cut(s)	516, 600, 776
BspQI	GCTCTTC	1 cut(s)	1013
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	2 cut(s)	38, 914
BssMI	GATC	7 cut(s)	508, 538, 592, 721, 781, 923, 955
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	126, 136
Bst6I	CTCTTC	6 cut(s)	435, 612, 741, 756, 837, 1013
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	4 cut(s)	432, 570, 660, 699
BstF5I	GGATG	3 cut(s)	381, 451, 460
BstKTI	GATC	7 cut(s)	511, 541, 595, 724, 784, 926, 958
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	7 cut(s)	508, 538, 592, 721, 781, 923, 955
BstMCI	CGRYCG	1 cut(s)	958
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	9 cut(s)	250, 436, 550, 622, 640, 661, 847, 850, 853
BstV2I	GAAGAC	1 cut(s)	813
BsuRI	GGCC	3 cut(s)	311, 575, 665
BtsCI	GGATG	3 cut(s)	381, 451, 460
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	261
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	766
CviAII	CATG	5 cut(s)	212, 260, 322, 331, 890
CviQI	GTAC	1 cut(s)	766
DdeI	CTNAG	4 cut(s)	432, 570, 660, 699
DpnI	GATC	7 cut(s)	510, 540, 594, 723, 783, 925, 957
DpnII	GATC	7 cut(s)	508, 538, 592, 721, 781, 923, 955
Eam1104I	CTCTTC	6 cut(s)	435, 612, 741, 756, 837, 1013
EarI	CTCTTC	6 cut(s)	435, 612, 741, 756, 837, 1013
EcoRII	CCWGG	1 cut(s)	37
FaeI	CATG	5 cut(s)	215, 263, 325, 334, 893
FaiI	YATR	9 cut(s)	119, 144, 213, 261, 323, 332, 416, 614, 891
FatI	CATG	5 cut(s)	211, 259, 321, 330, 889
Fnu4HI	GCNGC	9 cut(s)	264, 450, 564, 636, 654, 675, 861, 864, 867
FokI	GGATG	3 cut(s)	388, 458, 467
Fsp4HI	GCNGC	9 cut(s)	264, 450, 564, 636, 654, 675, 861, 864, 867
FspBI	CTAG	1 cut(s)	974
GluI	GCNGC	9 cut(s)	264, 450, 564, 636, 654, 675, 861, 864, 867
GsuI	CTGGAG	1 cut(s)	21
HaeIII	GGCC	3 cut(s)	311, 575, 665
HapII	CCGG	1 cut(s)	785
HgaI	GACGC	1 cut(s)	34
Hin1II	CATG	5 cut(s)	215, 263, 325, 334, 893
HinfI	GANTC	3 cut(s)	34, 55, 939
HpaII	CCGG	1 cut(s)	785
HphI	GGTGA	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	513, 960
Hpy188III	TCNNGA	1 cut(s)	730
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	4 cut(s)	296, 365, 521, 971
HpyCH4III	ACNGT	2 cut(s)	126, 136
HpyF3I	CTNAG	4 cut(s)	432, 570, 660, 699
Hsp92II	CATG	5 cut(s)	215, 263, 325, 334, 893
Kzo9I	GATC	7 cut(s)	508, 538, 592, 721, 781, 923, 955
LguI	GCTCTTC	1 cut(s)	1013
LmnI	GCTCC	2 cut(s)	874, 904
Lsp1109I	GCAGC	9 cut(s)	250, 436, 550, 622, 640, 661, 847, 850, 853
LweI	GCATC	5 cut(s)	366, 436, 568, 810, 847
MaeI	CTAG	1 cut(s)	974
MalI	GATC	7 cut(s)	510, 540, 594, 723, 783, 925, 957
MboI	GATC	7 cut(s)	508, 538, 592, 721, 781, 923, 955
MluCI	AATT	6 cut(s)	12, 65, 77, 334, 583, 1024
MlyI	GAGTC	2 cut(s)	28, 64
MseI	TTAA	2 cut(s)	15, 1027
MspI	CCGG	1 cut(s)	785
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
NdeII	GATC	7 cut(s)	508, 538, 592, 721, 781, 923, 955
NlaIII	CATG	5 cut(s)	215, 263, 325, 334, 893
NspI	RCATGY	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	1013
PfeI	GAWTC	1 cut(s)	939
PkrI	GCNGC	9 cut(s)	265, 451, 565, 637, 655, 676, 862, 865, 868
Ple19I	CGATCG	1 cut(s)	958
PleI	GAGTC	2 cut(s)	28, 63
PpsI	GAGTC	2 cut(s)	28, 63
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PvuI	CGATCG	1 cut(s)	958
RsaI	GTAC	1 cut(s)	767
RsaNI	GTAC	1 cut(s)	766
SapI	GCTCTTC	1 cut(s)	1013
SaqAI	TTAA	2 cut(s)	15, 1027
SatI	GCNGC	9 cut(s)	264, 450, 564, 636, 654, 675, 861, 864, 867
Sau3AI	GATC	7 cut(s)	508, 538, 592, 721, 781, 923, 955
SchI	GAGTC	2 cut(s)	28, 64
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	8 cut(s)	111, 479, 565, 637, 655, 676, 982, 990
SfaNI	GCATC	5 cut(s)	366, 436, 568, 810, 847
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	6 cut(s)	12, 65, 77, 334, 583, 1024
SsiI	CCGC	1 cut(s)	452
SspI	AATATT	3 cut(s)	163, 610, 715
SspMI	CTAG	1 cut(s)	974
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	126, 136
TaqI	TCGA	2 cut(s)	795, 1001
TasI	AATT	6 cut(s)	12, 65, 77, 334, 583, 1024
TatI	WGTACW	1 cut(s)	765
TfiI	GAWTC	1 cut(s)	939
Tru1I	TTAA	2 cut(s)	15, 1027
Tru9I	TTAA	2 cut(s)	15, 1027
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	9 cut(s)	263, 449, 563, 635, 653, 674, 860, 863, 866
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	1 cut(s)	490
XapI	RAATTY	2 cut(s)	334, 583
XceI	RCATGY	1 cut(s)	263
XspI	CTAG	1 cut(s)	974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.