Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 771 |
| AccI | GTMKAC | 1 cut(s) | 672 |
| AciI | CCGC | 4 cut(s) | 118, 416, 725, 908 |
| AclWI | GGATC | 3 cut(s) | 501, 606, 735 |
| AcsI | RAATTY | 2 cut(s) | 298, 824 |
| AcuI | CTGAAG | 1 cut(s) | 528 |
| AfaI | GTAC | 1 cut(s) | 773 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 117 |
| AgsI | TTSAA | 5 cut(s) | 245, 572, 739, 895, 1003 |
| AlwI | GGATC | 3 cut(s) | 501, 606, 735 |
| AoxI | GGCC | 3 cut(s) | 84, 558, 1101 |
| ApoI | RAATTY | 2 cut(s) | 298, 824 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 425, 457 |
| AsuHPI | GGTGA | 1 cut(s) | 34 |
| BbsI | GAAGAC | 2 cut(s) | 264, 1010 |
| BccI | CCATC | 4 cut(s) | 19, 307, 413, 494 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 641, 662, 675, 680, 696, 714 |
| BciVI | GTATCC | 1 cut(s) | 22 |
| BfuAI | ACCTGC | 1 cut(s) | 771 |
| BfuI | GTATCC | 1 cut(s) | 22 |
| BmsI | GCATC | 4 cut(s) | 160, 330, 400, 1102 |
| BpiI | GAAGAC | 2 cut(s) | 264, 1010 |
| BsaBI | GATNNNNATC | 1 cut(s) | 492 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 354, 384 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 117 |
| Bse1I | ACTGG | 1 cut(s) | 454 |
| Bse3DI | GCAATG | 1 cut(s) | 894 |
| Bse8I | GATNNNNATC | 1 cut(s) | 492 |
| BseGI | GGATG | 7 cut(s) | 175, 322, 345, 415, 424, 505, 970 |
| BseJI | GATNNNNATC | 1 cut(s) | 492 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 117 |
| BseMI | GCAATG | 1 cut(s) | 894 |
| BseMII | CTCAG | 5 cut(s) | 387, 546, 585, 657, 696 |
| BseNI | ACTGG | 1 cut(s) | 454 |
| BseRI | GAGGAG | 2 cut(s) | 528, 1116 |
| BsgI | GTGCAG | 1 cut(s) | 162 |
| BshFI | GGCC | 3 cut(s) | 86, 560, 1103 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 117 |
| BsnI | GGCC | 3 cut(s) | 86, 560, 1103 |
| Bsp143I | GATC | 5 cut(s) | 487, 493, 523, 598, 727 |
| BspACI | CCGC | 4 cut(s) | 118, 416, 725, 908 |
| BspANI | GGCC | 3 cut(s) | 86, 560, 1103 |
| BspCNI | CTCAG | 5 cut(s) | 388, 547, 586, 658, 697 |
| BspMI | ACCTGC | 1 cut(s) | 771 |
| BspPI | GGATC | 3 cut(s) | 501, 606, 735 |
| BsrDI | GCAATG | 1 cut(s) | 894 |
| BsrI | ACTGG | 1 cut(s) | 454 |
| BssMI | GATC | 5 cut(s) | 487, 493, 523, 598, 727 |
| Bst4CI | ACNGT | 2 cut(s) | 39, 865 |
| Bst6I | CTCTTC | 6 cut(s) | 207, 399, 747, 762, 1023, 1092 |
| BstC8I | GCNNGC | 1 cut(s) | 942 |
| BstDEI | CTNAG | 5 cut(s) | 396, 555, 594, 666, 705 |
| BstF5I | GGATG | 7 cut(s) | 175, 322, 345, 415, 424, 505, 970 |
| BstKTI | GATC | 5 cut(s) | 490, 496, 526, 601, 730 |
| BstMBI | GATC | 5 cut(s) | 487, 493, 523, 598, 727 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 92, 557, 707, 837, 914, 1121, 1130, 1139 |
| BstV2I | GAAGAC | 2 cut(s) | 264, 1010 |
| BsuI | GTATCC | 1 cut(s) | 22 |
| BsuRI | GGCC | 3 cut(s) | 86, 560, 1103 |
| BtsCI | GGATG | 7 cut(s) | 175, 322, 345, 415, 424, 505, 970 |
| BtsIMutI | CAGTG | 4 cut(s) | 447, 605, 840, 870 |
| BveI | ACCTGC | 1 cut(s) | 771 |
| Cac8I | GCNNGC | 1 cut(s) | 942 |
| Csp6I | GTAC | 1 cut(s) | 772 |
| CviAII | CATG | 3 cut(s) | 254, 262, 295 |
| CviQI | GTAC | 1 cut(s) | 772 |
| DdeI | CTNAG | 5 cut(s) | 396, 555, 594, 666, 705 |
| DpnI | GATC | 5 cut(s) | 489, 495, 525, 600, 729 |
| DpnII | GATC | 5 cut(s) | 487, 493, 523, 598, 727 |
| Eam1104I | CTCTTC | 6 cut(s) | 207, 399, 747, 762, 1023, 1092 |
| EarI | CTCTTC | 6 cut(s) | 207, 399, 747, 762, 1023, 1092 |
| Eco57I | CTGAAG | 1 cut(s) | 528 |
| FaeI | CATG | 3 cut(s) | 257, 265, 298 |
| FatI | CATG | 3 cut(s) | 253, 261, 294 |
| FauI | CCCGC | 2 cut(s) | 111, 901 |
| FblI | GTMKAC | 1 cut(s) | 672 |
| FokI | GGATG | 7 cut(s) | 182, 329, 352, 422, 431, 512, 977 |
| HaeIII | GGCC | 3 cut(s) | 86, 560, 1103 |
| Hin1II | CATG | 3 cut(s) | 257, 265, 298 |
| HincII | GTYRAC | 1 cut(s) | 673 |
| HindII | GTYRAC | 1 cut(s) | 673 |
| HindIII | AAGCTT | 1 cut(s) | 942 |
| HinfI | GANTC | 1 cut(s) | 230 |
| HphI | GGTGA | 1 cut(s) | 34 |
| Hpy166II | GTNNAC | 1 cut(s) | 673 |
| Hpy188I | TCNGA | 1 cut(s) | 964 |
| Hpy188III | TCNNGA | 5 cut(s) | 160, 491, 497, 736, 922 |
| Hpy8I | GTNNAC | 1 cut(s) | 673 |
| Hpy99I | CGWCG | 1 cut(s) | 677 |
| HpyAV | CCTTC | 3 cut(s) | 76, 329, 503 |
| HpyCH4III | ACNGT | 2 cut(s) | 39, 865 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 92, 557, 707, 837, 914, 1121, 1130, 1139 |
| HpyF3I | CTNAG | 5 cut(s) | 396, 555, 594, 666, 705 |
| Hsp92II | CATG | 3 cut(s) | 257, 265, 298 |
| Kzo9I | GATC | 5 cut(s) | 487, 493, 523, 598, 727 |
| LmnI | GCTCC | 3 cut(s) | 868, 1129, 1154 |
| LpnPI | CCDG | 9 cut(s) | 120, 195, 435, 449, 476, 534, 696, 766, 1143 |
| LweI | GCATC | 4 cut(s) | 160, 330, 400, 1102 |
| MalI | GATC | 5 cut(s) | 489, 495, 525, 600, 729 |
| MboI | GATC | 5 cut(s) | 487, 493, 523, 598, 727 |
| MluCI | AATT | 3 cut(s) | 298, 627, 824 |
| MmeI | TCCRAC | 1 cut(s) | 942 |
| MseI | TTAA | 1 cut(s) | 269 |
| MspA1I | CMGCKG | 1 cut(s) | 185 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 92, 557, 707, 837, 914, 1121, 1130, 1139 |
| NdeII | GATC | 5 cut(s) | 487, 493, 523, 598, 727 |
| NlaIII | CATG | 3 cut(s) | 257, 265, 298 |
| PfeI | GAWTC | 1 cut(s) | 230 |
| PvuII | CAGCTG | 1 cut(s) | 185 |
| RsaI | GTAC | 1 cut(s) | 773 |
| RsaNI | GTAC | 1 cut(s) | 772 |
| SalI | GTCGAC | 1 cut(s) | 671 |
| SaqAI | TTAA | 1 cut(s) | 269 |
| Sau3AI | GATC | 5 cut(s) | 487, 493, 523, 598, 727 |
| SfaNI | GCATC | 4 cut(s) | 160, 330, 400, 1102 |
| Sse9I | AATT | 3 cut(s) | 298, 627, 824 |
| SsiI | CCGC | 4 cut(s) | 118, 416, 725, 908 |
| SspI | AATATT | 2 cut(s) | 616, 721 |
| TaaI | ACNGT | 2 cut(s) | 39, 865 |
| TaqI | TCGA | 5 cut(s) | 161, 486, 672, 921, 983 |
| TasI | AATT | 3 cut(s) | 298, 627, 824 |
| TatI | WGTACW | 1 cut(s) | 771 |
| TfiI | GAWTC | 1 cut(s) | 230 |
| Tru1I | TTAA | 1 cut(s) | 269 |
| Tru9I | TTAA | 1 cut(s) | 269 |
| TscAI | CASTG | 4 cut(s) | 454, 612, 847, 870 |
| TspRI | CASTG | 4 cut(s) | 454, 612, 847, 870 |
| XapI | RAATTY | 2 cut(s) | 298, 824 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 118 |
| XmiI | GTMKAC | 1 cut(s) | 672 |