Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

5980019 .. 5980399

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000825

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCGGGAAGTGTTATCGAGAGCTGCAAGAGGAAGCAAGCTTATATAGAGAGATTGTGGGATCAAAAAGAAGAAGTGTCAAAAAAATACAAAAAGTTGAAGACAAAGATGAAGAAGAAGCAAGAAGAGATTAGAAAATGGAGAAACAAATGCAAACAACTAATAATGATAGTGCGAAGGATAGAAAAAAATGAAGAGGCTAATGAAGATGCTGCTGTTGGTCCTCCTGCTGTTCCTGCTCATGCTACTGCTCTTACAAATGAACCAAGGACACGATCAGCGATAAAGAGAATCAAAGAAAGAACCGATAGAAAAGAGAAGCAACTAGAAGGCTTTGAGGTGCAGAAACCATCGAAGAAACAGAGGAAGAAGAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

127

Amino Acids

14.89

Weight (kDa)

10.16

Isoelectric Point (pI)

69.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	2 cut(s)	24, 41
AluI	AGCT	2 cut(s)	24, 41
AlwI	GGATC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	24, 212
AspS9I	GGNCC	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	11, 199
BccI	CCATC	1 cut(s)	358
BfaI	CTAG	1 cut(s)	326
BisI	GCNGC	2 cut(s)	25, 213
BlsI	GCNGC	2 cut(s)	26, 214
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	11, 199
BsgI	GTGCAG	1 cut(s)	362
Bsp143I	GATC	2 cut(s)	61, 275
BspACI	CCGC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	69
BspQI	GCTCTTC	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	2 cut(s)	61, 275
BssT1I	CCWWGG	1 cut(s)	266
Bst6I	CTCTTC	3 cut(s)	120, 189, 365
BstC8I	GCNNGC	1 cut(s)	39
BstKTI	GATC	2 cut(s)	64, 278
BstMBI	GATC	2 cut(s)	61, 275
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	11, 199
BstV2I	GAAGAC	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	221
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	4 cut(s)	24, 41, 200, 333
CviKI_1	RGCY	4 cut(s)	24, 41, 200, 333
DpnI	GATC	2 cut(s)	63, 277
DpnII	GATC	2 cut(s)	61, 275
Eam1104I	CTCTTC	3 cut(s)	120, 189, 365
EarI	CTCTTC	3 cut(s)	120, 189, 365
Eco130I	CCWWGG	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	1 cut(s)	245
FaiI	YATR	3 cut(s)	45, 47, 243
FatI	CATG	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	25, 213
Fsp4HI	GCNGC	2 cut(s)	25, 213
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	2 cut(s)	25, 213
Hin1II	CATG	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	1 cut(s)	291
Hpy188III	TCNNGA	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	171, 323
HpyCH4V	TGCA	3 cut(s)	27, 153, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	61, 275
LguI	GCTCTTC	1 cut(s)	365
LpnPI	CCDG	2 cut(s)	240, 249
Lsp1109I	GCAGC	2 cut(s)	11, 199
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	326
MalI	GATC	2 cut(s)	63, 277
MboI	GATC	2 cut(s)	61, 275
MboII	GAAGA	9 cut(s)	83, 112, 124, 127, 137, 206, 218, 367, 379
MluCI	AATT	1 cut(s)	376
MnlI	CCTC	5 cut(s)	24, 190, 234, 331, 357
MseI	TTAA	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	2 cut(s)	61, 275
NlaIII	CATG	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	2 cut(s)	26, 214
PspPI	GGNCC	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	379
SatI	GCNGC	2 cut(s)	25, 213
Sau3AI	GATC	2 cut(s)	61, 275
Sau96I	GGNCC	1 cut(s)	221
SetI	ASST	3 cut(s)	26, 43, 342
SfaNI	GCATC	1 cut(s)	199
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	376
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	266
TaqI	TCGA	2 cut(s)	18, 353
TasI	AATT	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TseI	GCWGC	2 cut(s)	24, 212
TspDTI	ATGAA	4 cut(s)	125, 207, 219, 276
VpaK11BI	GGWCC	1 cut(s)	221
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.