Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Reverse (-)

6824652 .. 6828576

Gene Structure 3925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42462

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1674 bp

ATGATTGCCTTCCATGATGTGCTTCATAAAGTGTATGAGCAGCTCAATCGTGAAGAAAAGATGAGATTGAAAGCTGAGTTGAAGAAGACGCCATTTTGGAACTTGATTGAAGCTTATGACAAGGGATTGATGACTAAGAACACAACTGCAAAATCAGATCGAGAGATGCATAGGTTAGTGCAATGCTACAAGCCGGCTTTGAAGAAATTTAAGTTTGGAAACAAGTTGGCAGAAATAAGTGTATCGGATGTGCACTACATTTTGGGTTTGCCAAACCAAAAATCAGCTCTCACGGTGCCAAACCCAATAGATGATCCTAAGAAGCCGACTGATCATCCTCTTGTTCAAAGGTTCTTTGCAAATGACCGAAGGATAAAAAAAGCAAGAATCATGAGCTGTATTGATGAGCAGTTAAGGGAAAAAGCTCCTGGGAGGATAGAGAACATGACAAAGTTGCTGCTACTGCATCTGTTCATCACACTACTGTTTGCAAGCTCGGGGTCTACCTTAGGATGGAGCTTTGTGAAATGCATCACTGATATTGAGACAATGAGGAGATATAACTGGGCAAGAGCTGTTAGAGACTATTTGTTATTGTGTTTGCAAGCTGCCACAACGGGAAAAGCAAGGCAAATCAGTGGGTGTGTAGCATTAATCCCGTATTGGATATGCGAGAGGAGTACTATGCTTGTTGAAATTAAAGGCAGAGAAGCAATGACTCCAGGGTGCGTCAAGTGGAGTCTCCCTCAATTCACAAAAGAATTGCAGAAAATGCAAGTTGATGACATAGAGATTGATAATGCAGTTGCCGACAACAATAGAAGCAAACATGGCAAGGAAAACAATGACGATGACTTTGAGAACCCTCCATCAAAGCATGCTGCTACTGCACAGGCAAAGGGGCAGAAAAGACAAAGAGAAGAAAAGAAGGCCACAGTAGCTGCCAAAAAACCAGCCAAAAAGCGGGTGGCCGAAAAGAGAGCAAAAAGTAAAGAAAATAAGATCTCGAATGAGGGTGCTACTGCACCAGCTGAAAAGGAAAAACGTAGAAATGAAGAAGAGACAGCTGATAATGAATCAGAAGGTTTCGAAGATGAACATGAAGACATGACATTAAGAGATTGGGTGGATACGAACAGCATGAATTTTGCGAAAAAGATTGACGAGAATAAAGGAGAGGAAGGAATGCAAACAAAAACCACAAGTGGAGTAAATGTCAATGACATGGATTTGGGTGCAACTGAGGAAGAAGAGGATGCTGCGGATGGTATTAGAGATGACTTTAGCTTTGACACTGGATTTGGGGGGCAGGAAAATGAAACAAACTTTGTCGATCAGGATCGGGATGGAACTGAAGGAGCAGAACCAGATCAAATGCAAAGGAATGAAAAAGCTGCTACTGAGGTCGATCATGATCGGGATGGAACTGACGGAGGAGAACCAGATCAAATGGAAAGGAATGAAAAAGCTGCTACTGAGGTCGATCAGGATCGGGATGGAACTGAAGGAGGAGAACCAGATCGAATGGAAAGGAATGAAAGAGCTGCCACTGAGGCTGATGATGTTGAAAGGAATAGAAAAGCTGCTACTGAGGCTGATGATGTTGAAAGGAACAGAAAAGCTGCTACTGAGGCCGATGCAAATTTTATGGATCAAACCTTGAAAAGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

557

Amino Acids

63.21

Weight (kDa)

5.27

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	57 - 250	6.1e-06	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	503
AciI	CCGC	2 cut(s)	964, 1262
AclWI	GGATC	4 cut(s)	308, 1347, 1497, 1659
AcoI	YGGCCR	1 cut(s)	969
AcsI	RAATTY	3 cut(s)	206, 1144, 1642
AcuI	CTGAAG	2 cut(s)	1374, 1524
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	1 cut(s)	682
AfiI	CCNNNNNNNGG	2 cut(s)	513, 963
AgsI	TTSAA	9 cut(s)	70, 82, 110, 202, 347, 695, 1568, 1607, 1663
AjnI	CCWGG	2 cut(s)	427, 721
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	4 cut(s)	539, 576, 746, 1055
Alw44I	GTGCAC	1 cut(s)	251
AlwI	GGATC	4 cut(s)	308, 1347, 1497, 1659
AlwNI	CAGNNNCTG	1 cut(s)	941
Ama87I	CYCGRG	1 cut(s)	496
AoxI	GGCC	3 cut(s)	930, 969, 1632
ApaLI	GTGCAC	1 cut(s)	251
ApoI	RAATTY	3 cut(s)	206, 1144, 1642
ArsI	GACNNNNNNTTYG	6 cut(s)	839, 871, 1271, 1283, 1303, 1315
AseI	ATTAAT	1 cut(s)	653
AsuII	TTCGAA	1 cut(s)	1089
AvaI	CYCGRG	1 cut(s)	496
AxyI	CCTNAGG	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	295
BbsI	GAAGAC	2 cut(s)	92, 1110
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	6 cut(s)	507, 877, 1259, 1340, 1415, 1490
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BciT130I	CCWGG	2 cut(s)	429, 723
BciVI	GTATCC	1 cut(s)	1123
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	4 cut(s)	539, 576, 746, 1055
BfuI	GTATCC	1 cut(s)	1123
BglI	GCCNNNNNGGC	1 cut(s)	1553
BglII	AGATCT	1 cut(s)	1002
BmcAI	AGTACT	1 cut(s)	682
Bme1390I	CCNGG	2 cut(s)	429, 723
BmeT110I	CYCGRG	1 cut(s)	496
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	2 cut(s)	429, 723
BmrI	ACTGGG	1 cut(s)	574
BmsI	GCATC	5 cut(s)	156, 475, 540, 1246, 1627
BmuI	ACTGGG	1 cut(s)	574
BpiI	GAAGAC	2 cut(s)	92, 1110
BplI	GAGNNNNNCTC	2 cut(s)	730, 762
BpmI	CTGGAG	1 cut(s)	705
Bpu14I	TTCGAA	1 cut(s)	1089
BsaBI	GATNNNNATC	3 cut(s)	1338, 1413, 1488
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	428, 722
BsaXI	ACNNNNNCTCC	2 cut(s)	1200, 1230
Bsc4I	CCNNNNNNNGG	2 cut(s)	513, 963
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	569, 1300
Bse21I	CCTNAGG	1 cut(s)	508
Bse3DI	GCAATG	2 cut(s)	188, 720
Bse8I	GATNNNNATC	3 cut(s)	1338, 1413, 1488
BseBI	CCWGG	2 cut(s)	429, 723
BseDI	CCNNGG	2 cut(s)	428, 722
BseGI	GGATG	8 cut(s)	253, 334, 518, 1261, 1270, 1351, 1426, 1501
BseJI	GATNNNNATC	3 cut(s)	1338, 1413, 1488
BseLI	CCNNNNNNNGG	2 cut(s)	513, 963
BseMI	GCAATG	2 cut(s)	188, 720
BseMII	CTCAG	7 cut(s)	66, 1233, 1392, 1467, 1542, 1581, 1620
BseNI	ACTGG	2 cut(s)	569, 1300
BseRI	GAGGAG	4 cut(s)	568, 691, 1449, 1524
BseSI	GKGCMC	1 cut(s)	255
BsgI	GTGCAG	2 cut(s)	873, 1008
BshFI	GGCC	3 cut(s)	932, 971, 1634
BshNI	GGYRCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	513, 963
BsmAI	GTCTC	4 cut(s)	539, 576, 746, 1055
BsmI	GAATGC	1 cut(s)	1191
BsnI	GGCC	3 cut(s)	932, 971, 1634
BsoBI	CYCGRG	1 cut(s)	496
Bsp119I	TTCGAA	1 cut(s)	1089
Bsp1286I	GDGCHC	1 cut(s)	255
BspACI	CCGC	2 cut(s)	964, 1262
BspANI	GGCC	3 cut(s)	932, 971, 1634
BspCNI	CTCAG	7 cut(s)	67, 1234, 1393, 1468, 1543, 1582, 1621
BspHI	TCATGA	2 cut(s)	390, 1411
BspLI	GGNNCC	1 cut(s)	297
BspPI	GGATC	4 cut(s)	308, 1347, 1497, 1659
BspT104I	TTCGAA	1 cut(s)	1089
BspT107I	GGYRCC	1 cut(s)	295
BsrDI	GCAATG	2 cut(s)	188, 720
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	569, 1300
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	428, 722
BssNI	GRCGYC	1 cut(s)	89
Bst2UI	CCWGG	2 cut(s)	429, 723
Bst4CI	ACNGT	3 cut(s)	295, 486, 937
Bst6I	CTCTTC	2 cut(s)	1053, 1245
BstACI	GRCGYC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstBI	TTCGAA	1 cut(s)	1089
BstC8I	GCNNGC	4 cut(s)	195, 493, 606, 879
BstF5I	GGATG	8 cut(s)	253, 334, 518, 1261, 1270, 1351, 1426, 1501
BstMAI	GTCTC	4 cut(s)	539, 576, 746, 1055
BstMWI	GCNNNNNNNGC	8 cut(s)	463, 772, 831, 887, 938, 1553, 1592, 1631
BstNI	CCWGG	2 cut(s)	429, 723
BstNSI	RCATGY	1 cut(s)	881
BstSCI	CCNGG	2 cut(s)	427, 721
BstSLI	GKGCMC	1 cut(s)	255
BstV2I	GAAGAC	2 cut(s)	92, 1110
BstX2I	RGATCY	1 cut(s)	1002
BstYI	RGATCY	1 cut(s)	1002
Bsu36I	CCTNAGG	1 cut(s)	508
BsuI	GTATCC	1 cut(s)	1123
BsuRI	GGCC	3 cut(s)	932, 971, 1634
BtsCI	GGATG	8 cut(s)	253, 334, 518, 1261, 1270, 1351, 1426, 1501
BtsIMutI	CAGTG	4 cut(s)	534, 643, 1293, 1548
Cac8I	GCNNGC	4 cut(s)	195, 493, 606, 879
CaiI	CAGNNNCTG	1 cut(s)	941
CciI	TCATGA	2 cut(s)	390, 1411
Cfr10I	RCCGGY	1 cut(s)	193
CseI	GACGC	2 cut(s)	97, 718
Csp6I	GTAC	1 cut(s)	681
CviQI	GTAC	1 cut(s)	681
EaeI	YGGCCR	1 cut(s)	969
Eam1104I	CTCTTC	2 cut(s)	1053, 1245
EarI	CTCTTC	2 cut(s)	1053, 1245
Eco57I	CTGAAG	2 cut(s)	1374, 1524
Eco81I	CCTNAGG	1 cut(s)	508
Eco88I	CYCGRG	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	427, 721
EcoT22I	ATGCAT	2 cut(s)	171, 533
FauI	CCCGC	1 cut(s)	957
FbaI	TGATCA	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	503
FokI	GGATG	8 cut(s)	260, 321, 525, 1268, 1277, 1358, 1433, 1508
GsuI	CTGGAG	1 cut(s)	705
HaeIII	GGCC	3 cut(s)	932, 971, 1634
HapII	CCGG	1 cut(s)	194
HgaI	GACGC	2 cut(s)	97, 718
Hin1I	GRCGYC	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	4 cut(s)	387, 718, 739, 1076
HpaII	CCGG	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	253, 504
Hpy188I	TCNGA	3 cut(s)	157, 247, 1081
Hpy8I	GTNNAC	2 cut(s)	253, 504
HpyAV	CCTTC	7 cut(s)	19, 363, 922, 1076, 1175, 1349, 1499
HpyCH4III	ACNGT	3 cut(s)	295, 486, 937
HpyCH4IV	ACGT	1 cut(s)	1045
HpyF10VI	GCNNNNNNNGC	8 cut(s)	463, 772, 831, 887, 938, 1553, 1592, 1631
HpySE526I	ACGT	1 cut(s)	1045
Hsp92I	GRCGYC	1 cut(s)	89
KroI	GCCGGC	1 cut(s)	193
KroNI	GCCGGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	331
LmnI	GCTCC	3 cut(s)	430, 516, 1358
LweI	GCATC	5 cut(s)	156, 475, 540, 1246, 1627
MaeII	ACGT	1 cut(s)	1045
MflI	RGATCY	1 cut(s)	1002
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	6 cut(s)	206, 696, 749, 761, 1144, 1642
MlyI	GAGTC	2 cut(s)	712, 748
Mph1103I	ATGCAT	2 cut(s)	171, 533
MroNI	GCCGGC	1 cut(s)	193
MseI	TTAA	5 cut(s)	210, 413, 653, 699, 1115
MspA1I	CMGCKG	2 cut(s)	1031, 1067
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	429, 723
Mva1269I	GAATGC	1 cut(s)	1191
MvaI	CCWGG	2 cut(s)	429, 723
MwoI	GCNNNNNNNGC	8 cut(s)	463, 772, 831, 887, 938, 1553, 1592, 1631
NaeI	GCCGGC	1 cut(s)	195
NgoMIV	GCCGGC	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	297
NsiI	ATGCAT	2 cut(s)	171, 533
NspI	RCATGY	1 cut(s)	881
NspV	TTCGAA	1 cut(s)	1089
PaeI	GCATGC	1 cut(s)	881
PagI	TCATGA	2 cut(s)	390, 1411
PctI	GAATGC	1 cut(s)	1191
PdiI	GCCGGC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	387, 1076
PleI	GAGTC	2 cut(s)	712, 747
PpsI	GAGTC	2 cut(s)	712, 747
PshBI	ATTAAT	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	427, 721
PspGI	CCWGG	2 cut(s)	427, 721
PspN4I	GGNNCC	1 cut(s)	297
PstNI	CAGNNNCTG	1 cut(s)	941
PsuI	RGATCY	1 cut(s)	1002
PvuII	CAGCTG	2 cut(s)	1031, 1067
RsaI	GTAC	1 cut(s)	682
RsaNI	GTAC	1 cut(s)	681
SaqAI	TTAA	5 cut(s)	210, 413, 653, 699, 1115
ScaI	AGTACT	1 cut(s)	682
SchI	GAGTC	2 cut(s)	712, 748
ScrFI	CCNGG	2 cut(s)	429, 723
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	5 cut(s)	156, 475, 540, 1246, 1627
SfuI	TTCGAA	1 cut(s)	1089
SphI	GCATGC	1 cut(s)	881
Sse9I	AATT	6 cut(s)	206, 696, 749, 761, 1144, 1642
SsiI	CCGC	2 cut(s)	964, 1262
StyD4I	CCNGG	2 cut(s)	427, 721
TaaI	ACNGT	3 cut(s)	295, 486, 937
TaiI	ACGT	1 cut(s)	1048
TaqI	TCGA	7 cut(s)	160, 1007, 1089, 1332, 1407, 1482, 1522
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	6 cut(s)	206, 696, 749, 761, 1144, 1642
TatI	WGTACW	1 cut(s)	680
TfiI	GAWTC	2 cut(s)	387, 1076
Tru1I	TTAA	5 cut(s)	210, 413, 653, 699, 1115
Tru9I	TTAA	5 cut(s)	210, 413, 653, 699, 1115
TscAI	CASTG	4 cut(s)	541, 643, 1300, 1555
TspGWI	ACGGA	1 cut(s)	1446
TspRI	CASTG	4 cut(s)	541, 643, 1300, 1555
VneI	GTGCAC	1 cut(s)	251
VspI	ATTAAT	1 cut(s)	653
XapI	RAATTY	3 cut(s)	206, 1144, 1642
XceI	RCATGY	1 cut(s)	881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	964
XmiI	GTMKAC	1 cut(s)	503
ZrmI	AGTACT	1 cut(s)	682
Zsp2I	ATGCAT	2 cut(s)	171, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.