Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

51382443 .. 51382927

Gene Structure 485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009348

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGATTGAAAGCCAAGTTGAAGAAGACGCCATTTTGGAACTTGATTGAAGCTTATGATAAGGGATTGATGACTAAGAACATAGCTGCAAAATCAGATCGAGATAAGCATAGGTTAGTGCAATGCTACAAGCCGGCTTTGAAGAAATTTAACTTTGGAAACAAGTTGGCAGAAATAAGTGTATCAGACGTGCAATACATTTTGGGTTTGCCAAACCGAAAATCAGCTATCACGGTGCCAAACCCAATAGAGGATCCTAAGAAGCCGACTGATCATCCTCTTGTTCGAAGAGAACATGACAAAGTTGCTGCTACTGCATTTGTTCATCACGCTACTGTTTGCAAGCTCGGGGTCAACCTTAGGATGGAGCTTCGTGAAATGCATCACGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

132

Amino Acids

14.94

Weight (kDa)

9.81

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AclWI	GGATC	2 cut(s)	248, 261
AcsI	RAATTY	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	29
AfiI	CCNNNNNNNGG	2 cut(s)	250, 364
AgsI	TTSAA	4 cut(s)	10, 22, 50, 142
AjiI	CACGTC	1 cut(s)	190
AluBI	AGCT	5 cut(s)	53, 86, 227, 346, 370
AluI	AGCT	5 cut(s)	53, 86, 227, 346, 370
AlwI	GGATC	2 cut(s)	248, 261
Ama87I	CYCGRG	1 cut(s)	347
ApeKI	GCWGC	2 cut(s)	86, 308
ApoI	RAATTY	1 cut(s)	146
AsuII	TTCGAA	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	347
AxyI	CCTNAGG	1 cut(s)	359
BamHI	GGATCC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	73, 295
BccI	CCATC	1 cut(s)	358
BclI	TGATCA	1 cut(s)	271
BisI	GCNGC	2 cut(s)	87, 309
BlsI	GCNGC	2 cut(s)	88, 310
BmeT110I	CYCGRG	1 cut(s)	347
BmgBI	CACGTC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	237, 255
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 364
Bse118I	RCCGGY	1 cut(s)	133
Bse21I	CCTNAGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	128
BseGI	GGATG	2 cut(s)	274, 369
BseLI	CCNNNNNNNGG	2 cut(s)	250, 364
BseMI	GCAATG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	73, 295
BshNI	GGYRCC	1 cut(s)	235
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	250, 364
BsoBI	CYCGRG	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	286
Bsp143I	GATC	3 cut(s)	97, 253, 271
BspLI	GGNNCC	2 cut(s)	237, 255
BspPI	GGATC	2 cut(s)	248, 261
BspT104I	TTCGAA	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssMI	GATC	3 cut(s)	97, 253, 271
BssNI	GRCGYC	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	235, 337
Bst6I	CTCTTC	1 cut(s)	283
BstACI	GRCGYC	1 cut(s)	29
BstBI	TTCGAA	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	135, 344
BstDEI	CTNAG	3 cut(s)	75, 258, 359
BstF5I	GGATG	2 cut(s)	274, 369
BstKTI	GATC	3 cut(s)	100, 256, 274
BstMBI	GATC	3 cut(s)	97, 253, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	73, 295
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
Bsu36I	CCTNAGG	1 cut(s)	359
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	274, 369
Cac8I	GCNNGC	2 cut(s)	135, 344
Cfr10I	RCCGGY	1 cut(s)	133
CseI	GACGC	1 cut(s)	37
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	9 cut(s)	14, 53, 86, 133, 137, 227, 265, 346, 370
CviKI_1	RGCY	9 cut(s)	14, 53, 86, 133, 137, 227, 265, 346, 370
DdeI	CTNAG	3 cut(s)	75, 258, 359
DpnI	GATC	3 cut(s)	99, 255, 273
DpnII	GATC	3 cut(s)	97, 253, 271
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco81I	CCTNAGG	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	384
FaeI	CATG	1 cut(s)	299
FaiI	YATR	4 cut(s)	57, 83, 111, 297
FatI	CATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	87, 309
FokI	GGATG	2 cut(s)	261, 376
Fsp4HI	GCNGC	2 cut(s)	87, 309
GluI	GCNGC	2 cut(s)	87, 309
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	51
HpaII	CCGG	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	2 cut(s)	97, 187
Hpy188III	TCNNGA	2 cut(s)	101, 374
Hpy8I	GTNNAC	1 cut(s)	355
HpyCH4III	ACNGT	2 cut(s)	235, 337
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	6 cut(s)	89, 121, 193, 317, 342, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	3 cut(s)	75, 258, 359
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	299
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	97, 253, 271
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	1 cut(s)	147
Lsp1109I	GCAGC	2 cut(s)	73, 295
LweI	GCATC	1 cut(s)	391
MaeII	ACGT	1 cut(s)	189
MalI	GATC	3 cut(s)	99, 255, 273
MboI	GATC	3 cut(s)	97, 253, 271
MboII	GAAGA	4 cut(s)	34, 37, 154, 300
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	1 cut(s)	146
MnlI	CCTC	2 cut(s)	244, 288
Mph1103I	ATGCAT	1 cut(s)	384
MroNI	GCCGGC	1 cut(s)	133
MseI	TTAA	1 cut(s)	150
MspI	CCGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	314
NaeI	GCCGGC	1 cut(s)	135
NdeII	GATC	3 cut(s)	97, 253, 271
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	2 cut(s)	237, 255
NsiI	ATGCAT	1 cut(s)	384
NspV	TTCGAA	1 cut(s)	286
PdiI	GCCGGC	1 cut(s)	135
PkrI	GCNGC	2 cut(s)	88, 310
PspN4I	GGNNCC	2 cut(s)	237, 255
PsuI	RGATCY	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	2 cut(s)	87, 309
Sau3AI	GATC	3 cut(s)	97, 253, 271
SetI	ASST	8 cut(s)	55, 88, 116, 192, 229, 348, 360, 372
SfaNI	GCATC	1 cut(s)	391
SfuI	TTCGAA	1 cut(s)	286
Sse9I	AATT	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	235, 337
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	100, 286
TasI	AATT	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TseI	GCWGC	2 cut(s)	86, 308
TspDTI	ATGAA	1 cut(s)	314
XapI	RAATTY	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.