Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

37740127 .. 37740773

Gene Structure 647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32126

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCGGGAAGTGCTATCGAGAGCTGCAAAAGGAAGCAAGCTTATATAGAGAGATTGTGGGATGAAAAAGAAGAAGTGTCAAAAAAATACAAAAAGTTGAAGACAAAGTTGAAGAAGAAGCAAGAAGAGCTTAGAAAATGGAGAAACAAATGCAAACAACTAATGATGATAGTGCAAAGGGTAGAAAAAGATGAAGAGGCCAATGAAGATGTTGCTGCTACTGCTGCTCCTGCTGCTCCTCCTGCTGCTGCTGCTCCTGCTGCTGTTCCCGCTCATGCTACTGCTCCTGCTACTGTTCCTTCTCATTCTACTGCTCCTGCTGCTGTTCCTGCTCATGCTACTGCTCCATCAAATGAACCAAGGACACGATCAGCGATAAAGAGAATCAAAGAAAGAACCGATCGGAAAGAGAAGCAACTAGAAGGTTTTGAGGTGCAGAAACCATCGAAGAAACAGAGGAAGAAGAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

157

Amino Acids

17.51

Weight (kDa)

9.97

Isoelectric Point (pI)

67.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	272
AciI	CCGC	2 cut(s)	5, 270
AgsI	TTSAA	2 cut(s)	100, 112
AluBI	AGCT	3 cut(s)	24, 41, 130
AluI	AGCT	3 cut(s)	24, 41, 130
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	9 cut(s)	24, 215, 224, 233, 245, 248, 251, 260, 320
BbsI	GAAGAC	1 cut(s)	107
BbvI	GCAGC	9 cut(s)	11, 202, 211, 220, 232, 235, 238, 247, 307
BccI	CCATC	2 cut(s)	355, 451
BfaI	CTAG	1 cut(s)	419
BisI	GCNGC	9 cut(s)	25, 216, 225, 234, 246, 249, 252, 261, 321
BlsI	GCNGC	9 cut(s)	26, 217, 226, 235, 247, 250, 253, 262, 322
BpiI	GAAGAC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	359
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
BseDI	CCNNGG	1 cut(s)	359
BseGI	GGATG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	9 cut(s)	11, 202, 211, 220, 232, 235, 238, 247, 307
BsgI	GTGCAG	1 cut(s)	455
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	1 cut(s)	200
BsiEI	CGRYCG	1 cut(s)	403
BsnI	GGCC	1 cut(s)	200
Bsp143I	GATC	2 cut(s)	368, 400
BspACI	CCGC	2 cut(s)	5, 270
BspANI	GGCC	1 cut(s)	200
BspQI	GCTCTTC	2 cut(s)	120, 458
BsrBI	CCGCTC	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	2 cut(s)	368, 400
BssT1I	CCWWGG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	3 cut(s)	120, 189, 458
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	2 cut(s)	371, 403
BstMBI	GATC	2 cut(s)	368, 400
BstMCI	CGRYCG	1 cut(s)	403
BstV1I	GCAGC	9 cut(s)	11, 202, 211, 220, 232, 235, 238, 247, 307
BstV2I	GAAGAC	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	39
CviAII	CATG	2 cut(s)	275, 335
CviJI	RGCY	4 cut(s)	24, 41, 130, 200
CviKI_1	RGCY	4 cut(s)	24, 41, 130, 200
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	2 cut(s)	370, 402
DpnII	GATC	2 cut(s)	368, 400
Eam1104I	CTCTTC	3 cut(s)	120, 189, 458
EarI	CTCTTC	3 cut(s)	120, 189, 458
Eco130I	CCWWGG	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	2 cut(s)	278, 338
FaiI	YATR	4 cut(s)	45, 47, 276, 336
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	2 cut(s)	274, 334
FauI	CCCGC	1 cut(s)	277
Fnu4HI	GCNGC	9 cut(s)	25, 216, 225, 234, 246, 249, 252, 261, 321
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	9 cut(s)	25, 216, 225, 234, 246, 249, 252, 261, 321
FspBI	CTAG	1 cut(s)	419
GluI	GCNGC	9 cut(s)	25, 216, 225, 234, 246, 249, 252, 261, 321
HaeIII	GGCC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	278, 338
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	1 cut(s)	384
Hpy188I	TCNGA	1 cut(s)	405
Hpy188III	TCNNGA	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	309, 416
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	4 cut(s)	27, 153, 175, 436
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	278, 338
Kzo9I	GATC	2 cut(s)	368, 400
LguI	GCTCTTC	2 cut(s)	120, 458
LmnI	GCTCC	6 cut(s)	232, 241, 259, 289, 319, 349
LpnPI	CCDG	6 cut(s)	243, 255, 270, 300, 330, 342
Lsp1109I	GCAGC	9 cut(s)	11, 202, 211, 220, 232, 235, 238, 247, 307
MaeI	CTAG	1 cut(s)	419
MalI	GATC	2 cut(s)	370, 402
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	2 cut(s)	368, 400
MboII	GAAGA	9 cut(s)	83, 112, 124, 127, 137, 206, 218, 460, 472
MluCI	AATT	1 cut(s)	469
MnlI	CCTC	4 cut(s)	190, 249, 424, 450
MseI	TTAA	1 cut(s)	472
NdeII	GATC	2 cut(s)	368, 400
NlaIII	CATG	2 cut(s)	278, 338
PciSI	GCTCTTC	2 cut(s)	120, 458
PfeI	GAWTC	1 cut(s)	384
PkrI	GCNGC	9 cut(s)	26, 217, 226, 235, 247, 250, 253, 262, 322
Ple19I	CGATCG	1 cut(s)	403
PvuI	CGATCG	1 cut(s)	403
SapI	GCTCTTC	2 cut(s)	120, 458
SaqAI	TTAA	1 cut(s)	472
SatI	GCNGC	9 cut(s)	25, 216, 225, 234, 246, 249, 252, 261, 321
Sau3AI	GATC	2 cut(s)	368, 400
SetI	ASST	5 cut(s)	26, 43, 132, 427, 435
Sse9I	AATT	1 cut(s)	469
SsiI	CCGC	2 cut(s)	5, 270
SspMI	CTAG	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	2 cut(s)	18, 446
TasI	AATT	1 cut(s)	469
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	1 cut(s)	472
Tru9I	TTAA	1 cut(s)	472
TseI	GCWGC	9 cut(s)	24, 215, 224, 233, 245, 248, 251, 260, 320
TspDTI	ATGAA	4 cut(s)	78, 207, 219, 369
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.