Rmu_sc0006361.1_g000003

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006361.1
Physical Location & Seq
Reverse (-)
8268 .. 9679
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006361.1_g000003.1.cds

Sequence Viewer

Length: 1059 bp
atgaacaacatgaattttgcgaaaaagattgacgagaataaaggagaggaagggatgcaaacaaaaaccacaagtggagtaaatgtcattgatatggatttgggtgcaactgaggaagaagaggatgctgcggatggtattagagatgactttagctttgacactggattgggggggggggggcaggaaaatgaaacaaactttgtcgatcaggatcgggatggaactgaaggaggagaactagatcaaatggaaaggaatgaaaaagctgctactgaggctgatgatgttgaaaggaacaaaaaagctgctactgaggccgatgcaaattttatggatcaaaccctgaaaaatattatagaagagattgtaaatgaagctgcaaggaaagaaaaagctgctactgaggccgatgaagctgcaaggcacgacaaagctgctaataaggctggtgcaaatattgcggatcaaatcttgaacaacattgtagaagagattatgaatgaagagtacaagagcaggaatgatccggtttggttcgatgaatgggaagccttgttgcaaagtgagtacgacaaatttggctatccaagcactgatgaagaacagatcaatacagtggagcattggcaagatgtagaaatgctgaaacaagatatggcgggaagtgctatcgagagctgcaagaggaagcaagcttatatagagagattgtgggatgaaaaagaagtgtcaaaaaaatacaaaaagttgaagacaaagatgaagaagaagcaagaagagattagaaaatggagaaacaaatgcaaacaactaatgatgatactgcaaagggtagaaaaagatgaagaggccaatgaagatgctgctgctactgctgctcctcctgctgttgctgctcctgttgttgttcctgctcatgctgctgctccaacaaatgaaccaaggacacgatcagcgataaagagaattaatgaaagaaccgattggaaagagaagcaactagaaggttttgaggtgcagaaaccatcgaagaaacagaggaagaagagcaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

39.94

Weight (kDa)

4.83

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 131, 464, 662
AclWI GGATC 4 cut(s) 222, 345, 474, 521
AcsI RAATTY 3 cut(s) 13, 328, 578
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 2 cut(s) 512, 572
AgsI TTSAA 3 cut(s) 293, 478, 754
AluBI AGCT 9 cut(s) 156, 269, 308, 380, 398, 419, 437, 681, 698
AluI AGCT 9 cut(s) 156, 269, 308, 380, 398, 419, 437, 681, 698
AlwI GGATC 4 cut(s) 222, 345, 474, 521
AoxI GGCC 3 cut(s) 318, 408, 852
ApoI RAATTY 3 cut(s) 13, 328, 578
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AseI ATTAAT 1 cut(s) 972
BbsI GAAGAC 1 cut(s) 761
BccI CCATC 3 cut(s) 128, 215, 1036
BcgI CGANNNNNNTGC 4 cut(s) 401, 419, 435, 453
BfaI CTAG 2 cut(s) 242, 1004
BmsI GCATC 4 cut(s) 45, 115, 313, 853
BpiI GAAGAC 1 cut(s) 761
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 944
BsaWI WCCGGW 1 cut(s) 529
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 865, 895
Bse1I ACTGG 1 cut(s) 169
Bse8I GATNNNNATC 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 944
BseGI GGATG 5 cut(s) 60, 130, 139, 226, 724
BseJI GATNNNNATC 1 cut(s) 213
BseMII CTCAG 4 cut(s) 102, 267, 306, 396
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 2 cut(s) 249, 873
BsgI GTGCAG 1 cut(s) 1040
BshFI GGCC 3 cut(s) 320, 410, 854
BsiSI CCGG 1 cut(s) 530
BsnI GGCC 3 cut(s) 320, 410, 854
Bsp143I GATC 8 cut(s) 208, 214, 244, 337, 466, 526, 609, 953
BspACI CCGC 3 cut(s) 131, 464, 662
BspANI GGCC 3 cut(s) 320, 410, 854
BspCNI CTCAG 4 cut(s) 103, 268, 307, 397
BspPI GGATC 4 cut(s) 222, 345, 474, 521
BspQI GCTCTTC 1 cut(s) 1043
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 944
BssMI GATC 8 cut(s) 208, 214, 244, 337, 466, 526, 609, 953
BssT1I CCWWGG 1 cut(s) 944
Bst4CI ACNGT 1 cut(s) 619
Bst6I CTCTTC 7 cut(s) 114, 357, 486, 501, 774, 843, 1043
BstAPI GCANNNNNTGC 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 696
BstDEI CTNAG 4 cut(s) 111, 276, 315, 405
BstF5I GGATG 5 cut(s) 60, 130, 139, 226, 724
BstKTI GATC 8 cut(s) 211, 217, 247, 340, 469, 529, 612, 956
BstMBI GATC 8 cut(s) 208, 214, 244, 337, 466, 526, 609, 953
BstV2I GAAGAC 1 cut(s) 761
BsuRI GGCC 3 cut(s) 320, 410, 854
BtsCI GGATG 5 cut(s) 60, 130, 139, 226, 724
BtsIMutI CAGTG 3 cut(s) 162, 594, 624
Cac8I GCNNGC 1 cut(s) 696
Csp6I GTAC 2 cut(s) 511, 571
CviAII CATG 2 cut(s) 10, 920
CviQI GTAC 2 cut(s) 511, 571
DdeI CTNAG 4 cut(s) 111, 276, 315, 405
DpnI GATC 8 cut(s) 210, 216, 246, 339, 468, 528, 611, 955
DpnII GATC 8 cut(s) 208, 214, 244, 337, 466, 526, 609, 953
Eam1104I CTCTTC 7 cut(s) 114, 357, 486, 501, 774, 843, 1043
EarI CTCTTC 7 cut(s) 114, 357, 486, 501, 774, 843, 1043
Eco130I CCWWGG 1 cut(s) 944
Eco57I CTGAAG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 944
ErhI CCWWGG 1 cut(s) 944
FaeI CATG 2 cut(s) 13, 923
FaiI YATR 9 cut(s) 11, 95, 335, 359, 500, 659, 702, 704, 921
FatI CATG 2 cut(s) 9, 919
FauI CCCGC 1 cut(s) 655
FokI GGATG 5 cut(s) 67, 137, 146, 233, 731
FspBI CTAG 2 cut(s) 242, 1004
HaeIII GGCC 3 cut(s) 320, 410, 854
HapII CCGG 1 cut(s) 530
Hin1II CATG 2 cut(s) 13, 923
HindIII AAGCTT 1 cut(s) 696
HpaII CCGG 1 cut(s) 530
Hpy188III TCNNGA 4 cut(s) 212, 218, 475, 676
HpyAV CCTTC 3 cut(s) 44, 224, 1001
HpyCH4III ACNGT 1 cut(s) 619
HpyF3I CTNAG 4 cut(s) 111, 276, 315, 405
Hsp92II CATG 2 cut(s) 13, 923
Kzo9I GATC 8 cut(s) 208, 214, 244, 337, 466, 526, 609, 953
LguI GCTCTTC 1 cut(s) 1043
LmnI GCTCC 4 cut(s) 622, 886, 904, 934
LweI GCATC 4 cut(s) 45, 115, 313, 853
MaeI CTAG 2 cut(s) 242, 1004
MalI GATC 8 cut(s) 210, 216, 246, 339, 468, 528, 611, 955
MboI GATC 8 cut(s) 208, 214, 244, 337, 466, 526, 609, 953
MluCI AATT 5 cut(s) 13, 328, 578, 969, 1054
MmeI TCCRAC 1 cut(s) 956
MseI TTAA 2 cut(s) 972, 1057
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 1 cut(s) 530
NdeII GATC 8 cut(s) 208, 214, 244, 337, 466, 526, 609, 953
NlaIII CATG 2 cut(s) 13, 923
PciSI GCTCTTC 1 cut(s) 1043
PshBI ATTAAT 1 cut(s) 972
RsaI GTAC 2 cut(s) 512, 572
RsaNI GTAC 2 cut(s) 511, 571
RseI CAYNNNNRTG 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 1043
SaqAI TTAA 2 cut(s) 972, 1057
Sau3AI GATC 8 cut(s) 208, 214, 244, 337, 466, 526, 609, 953
SfaNI GCATC 4 cut(s) 45, 115, 313, 853
SmiMI CAYNNNNRTG 1 cut(s) 92
Sse9I AATT 5 cut(s) 13, 328, 578, 969, 1054
SsiI CCGC 3 cut(s) 131, 464, 662
SspI AATATT 2 cut(s) 355, 460
SspMI CTAG 2 cut(s) 242, 1004
StyI CCWWGG 1 cut(s) 944
TaaI ACNGT 1 cut(s) 619
TaqI TCGA 4 cut(s) 207, 540, 675, 1031
TasI AATT 5 cut(s) 13, 328, 578, 969, 1054
TatI WGTACW 1 cut(s) 510
Tru1I TTAA 2 cut(s) 972, 1057
Tru9I TTAA 2 cut(s) 972, 1057
TscAI CASTG 3 cut(s) 169, 601, 624
TspRI CASTG 3 cut(s) 169, 601, 624
VspI ATTAAT 1 cut(s) 972
XapI RAATTY 3 cut(s) 13, 328, 578
XspI CTAG 2 cut(s) 242, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.