Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Reverse (-)

30592106 .. 30592978

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG178300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAAGAGATATAATTGGGCACAAGCTGTTAGAGACTATTTGCTATTGTGTTTGCAAGCTGCTACAAAGGGAAAAGCAAGGCAAATCAGTGGATGTGTAACATTAATCCCGTATTGGATATCCGAGAGGAGTACTATGCTTGTTGAAATTAAAGGCAGAGAAGCAATGACTCCAGGGTGCGTCAAGTGGAGTCTCCCTCAATTCACAAAAGAATTGCAGAAAATGCAAGTTGATGAAATAGAAGTGATGGATACGCTACCGTCTGCTACTATATATGCTTATGCTACTGTGCAATATGCTACTAACTTGAAAAATATTTTATTGCAGATTGATAATGCAGTTGCCGACAACAATAGAAGCAAACATGGAAAGGAAAACAGTGATGATGACTTTGAGAACCCTCTATCAAAGCATGCTGCTACTGCACAGGCAAAGGGGCAGAAAAGACAAAGAGAAGAAAAGAAGGCCACAGTAGCTGCCAAAAAACCAGCCAAAAAGTGGGTGGCAGAAAAGAGAGCAAGAAGTAAAGAAAATAAGATCTCGAATGAGGATGCTACTGCACCAGCTGAAAAGGAAAAGTGTAGAAATGAAGAAGAGACAGCTGATAATGAATCAGAAGGTTTCGAAGATGAACATGAAGACATGACATTAAGAGATTGGGTGGATATGAACAGCATGAATTTTGTGAAAAAGATTGACGAGAATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

236

Amino Acids

26.96

Weight (kDa)

6.86

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	679
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	498
AgsI	TTSAA	2 cut(s)	146, 310
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	5 cut(s)	26, 59, 476, 566, 602
AluI	AGCT	5 cut(s)	26, 59, 476, 566, 602
Alw26I	GTCTC	3 cut(s)	27, 197, 590
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	3 cut(s)	59, 416, 476
ApoI	RAATTY	1 cut(s)	679
AseI	ATTAAT	1 cut(s)	104
AsuII	TTCGAA	1 cut(s)	624
BaeGI	GKGCMC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	645
BbvI	GCAGC	3 cut(s)	46, 403, 463
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	174
BciVI	GTATCC	1 cut(s)	244
BcoDI	GTCTC	3 cut(s)	27, 197, 590
BfuI	GTATCC	1 cut(s)	244
BglII	AGATCT	1 cut(s)	537
BisI	GCNGC	3 cut(s)	60, 417, 477
BlsI	GCNGC	3 cut(s)	61, 418, 478
BmcAI	AGTACT	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	624
BsaJI	CCNNGG	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	498
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	2 cut(s)	98, 556
BseLI	CCNNNNNNNGG	1 cut(s)	498
BseMI	GCAATG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	3 cut(s)	46, 403, 463
BsgI	GTGCAG	2 cut(s)	408, 543
BshFI	GGCC	1 cut(s)	467
BslI	CCNNNNNNNGG	1 cut(s)	498
BsmAI	GTCTC	3 cut(s)	27, 197, 590
BsnI	GGCC	1 cut(s)	467
Bsp119I	TTCGAA	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	537
BspANI	GGCC	1 cut(s)	467
BspT104I	TTCGAA	1 cut(s)	624
BsrDI	GCAATG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	1 cut(s)	537
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	4 cut(s)	261, 289, 380, 472
Bst6I	CTCTTC	1 cut(s)	588
BstAPI	GCANNNNNTGC	1 cut(s)	223
BstBI	TTCGAA	1 cut(s)	624
BstC8I	GCNNGC	2 cut(s)	57, 414
BstF5I	GGATG	2 cut(s)	98, 556
BstKTI	GATC	1 cut(s)	540
BstMAI	GTCTC	3 cut(s)	27, 197, 590
BstMBI	GATC	1 cut(s)	537
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 422, 473
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	22
BstV1I	GCAGC	3 cut(s)	46, 403, 463
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	537
BstYI	RGATCY	1 cut(s)	537
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	467
BtsCI	GGATG	2 cut(s)	98, 556
BtsIMutI	CAGTG	2 cut(s)	94, 385
Cac8I	GCNNGC	2 cut(s)	57, 414
CaiI	CAGNNNCTG	1 cut(s)	476
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	5 cut(s)	365, 413, 635, 643, 676
CviJI	RGCY	7 cut(s)	26, 59, 467, 476, 491, 566, 602
CviKI_1	RGCY	7 cut(s)	26, 59, 467, 476, 491, 566, 602
CviQI	GTAC	1 cut(s)	132
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco32I	GATATC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	172
EcoRV	GATATC	1 cut(s)	120
FaeI	CATG	5 cut(s)	368, 416, 638, 646, 679
FatI	CATG	5 cut(s)	364, 412, 634, 642, 675
Fnu4HI	GCNGC	3 cut(s)	60, 417, 477
FokI	GGATG	2 cut(s)	105, 563
Fsp4HI	GCNGC	3 cut(s)	60, 417, 477
GluI	GCNGC	3 cut(s)	60, 417, 477
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	467
HgaI	GACGC	1 cut(s)	169
Hin1II	CATG	5 cut(s)	368, 416, 638, 646, 679
HinfI	GANTC	3 cut(s)	169, 190, 611
Hpy188I	TCNGA	2 cut(s)	124, 616
Hpy188III	TCNNGA	1 cut(s)	541
HpyAV	CCTTC	2 cut(s)	457, 611
HpyCH4III	ACNGT	4 cut(s)	261, 289, 380, 472
HpyCH4V	TGCA	8 cut(s)	55, 217, 226, 292, 325, 338, 425, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 422, 473
Hsp92II	CATG	5 cut(s)	368, 416, 638, 646, 679
Kzo9I	GATC	1 cut(s)	537
LpnPI	CCDG	5 cut(s)	159, 186, 413, 501, 576
Lsp1109I	GCAGC	3 cut(s)	46, 403, 463
LweI	GCATC	1 cut(s)	541
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	539
MboI	GATC	1 cut(s)	537
MboII	GAAGA	6 cut(s)	16, 467, 602, 605, 638, 650
MflI	RGATCY	1 cut(s)	537
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	5 cut(s)	13, 147, 200, 212, 679
MlyI	GAGTC	2 cut(s)	163, 199
MnlI	CCTC	4 cut(s)	120, 207, 411, 541
MseI	TTAA	3 cut(s)	104, 150, 650
MspA1I	CMGCKG	2 cut(s)	566, 602
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	223, 422, 473
NdeII	GATC	1 cut(s)	537
NlaIII	CATG	5 cut(s)	368, 416, 638, 646, 679
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	624
PaeI	GCATGC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	611
PflMI	CCANNNNNTGG	1 cut(s)	498
PkrI	GCNGC	3 cut(s)	61, 418, 478
PleI	GAGTC	2 cut(s)	163, 198
PpsI	GAGTC	2 cut(s)	163, 198
PshBI	ATTAAT	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	537
PvuII	CAGCTG	2 cut(s)	566, 602
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	104, 150, 650
SatI	GCNGC	3 cut(s)	60, 417, 477
Sau3AI	GATC	1 cut(s)	537
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	2 cut(s)	163, 199
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	6 cut(s)	28, 61, 478, 568, 604, 622
SfaNI	GCATC	1 cut(s)	541
SfuI	TTCGAA	1 cut(s)	624
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	5 cut(s)	13, 147, 200, 212, 679
SspI	AATATT	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	4 cut(s)	261, 289, 380, 472
TaqI	TCGA	2 cut(s)	542, 624
TasI	AATT	5 cut(s)	13, 147, 200, 212, 679
TatI	WGTACW	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	3 cut(s)	104, 150, 650
Tru9I	TTAA	3 cut(s)	104, 150, 650
TscAI	CASTG	2 cut(s)	94, 385
TseI	GCWGC	3 cut(s)	59, 416, 476
TspDTI	ATGAA	8 cut(s)	17, 249, 603, 624, 645, 651, 683, 692
TspRI	CASTG	2 cut(s)	94, 385
Van91I	CCANNNNNTGG	1 cut(s)	498
VspI	ATTAAT	1 cut(s)	104
XapI	RAATTY	1 cut(s)	679
XceI	RCATGY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	2 cut(s)	495, 499
ZrmI	AGTACT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.