Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

30740914 .. 30744976

Gene Structure 4063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35811.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGTATGACGACAGGCTCCAAATTGTAACAAGGTGTTTACAAGGTGTTCATATCACTTTCACAATTTGTGATGGTGGGGAAGCAGACTCTAATGGTGTGATTTTCACAGTTTACAGGACAGTAGCAGCTTTTGTACACAAAGATATGGACAAAAACAACAAGATTGATAATGCAGTTGTAGAAAAAAGAAGAAACATTTATGCAGCCATAAAAAACAGTGATGATGACTTCGAGGACCCTCAGTTGAAGATTCAACCCAAGAAAAGAAAGATGGAAGCTAAGAAAGAGAAAGTAGGTGTTGCGGTGAGAAGAAACAAGATCGAAAAGAAAGCCAAAGTCACTGCAAAGAAATCAAACAAAAACAAAAAGAAGGATGCTGATGAAGAAGTTCAAGAGGATGCTTCCGACCAATTTATGAACATAGCTACTGAACAAGTTCAAGAGGGTGCTGCTGAAGAAGTTCAAGAGGATGCTGCTGAAGAAGTTCAAGAGGATGTTGCCGACCAATTTATGGAGATAGCTACCGAACAAGTTCAAGAGGGTGCTGCTGAACAAGTTCAAGAGGATGCTACCGACCAAATTATGGAGATAGCTACTGAACAAGTTCAAGAGGGTGTTGCTGAACAAGTTCAAGAGGAACCTAAATACTTGGCATTAGAAGATTGGGTAAACACAGAGGAAATAGAGAATCAACATGCCAAAGTGGATGGAAAGGGTAAGGAAATGGTTGAATTTAACTTTGAGAATGGAGGAGGAGCTGAAGGAAATGTAGATGAGTTTGAGGATGCAATCTATGAACAAAATGCCGCAGAGACAGAAAGAATCCTGAAGAAGTTTTTCAATCAGGATAGGGATGGAGAAACTGAGGTATTTTCGAAGAGAATGAAACATAACAAAATGTGTACTCAGGAAGAACTTGAACAGTGGATAAAGCAGATGGAAAAGGAGGCCCTAATATATAACGGAATTGAGTATCAAAGCAGTGAAGACAAAGACGTTAACACTGTGGAGCACCGGCAGGATGGGTCTGCAATAGACACCTGCACCTCCTGCAAGAGGAATTTTGATTACATAGAACAGCTATGTGAAGAAAAAGAAGAAGTGACAAAAAAATATAAGCAGTTGAAGGCAAAGCTGAAGAAGAAGGAAGAACATATTAAAAAGTTAAGGATAAAGTGCAGACAACTATGGCTACTGCAAAAGGGTTTAGAGGGTGCTAGGAGTGAGAAAGACACTGAGGGTGAAAAAGGTGGAGCTGGGAGTGAAAAAATTGTCGCTGTAGAAGCTGCAAAGAGTGTGGCTAAGGTTGTTACTGAGAAGGAAATTTGTCGTTCCAAATGTGCAACTGCACAAGAAACTGAGAAGGGTGCAGCTGCAAAAGATGACAAAGTAGCTGAAACTACCACAACAAAGGCCACAGAAAAGGGCAAAGTTGAAAATGAAGCTCAACCTGCTACTTCCCCAAGGACGCGTTCAATAGTTAAGAGGATCAAAGGAAGGAGGGACCGAAAAGAGAAGAAAATGGAAGATTACGAGGTGCAGAGACTCTTGAAAAAACCAAGGAATGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

525

Amino Acids

59.73

Weight (kDa)

5.27

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1049
Acc36I	ACCTGC	2 cut(s)	1049, 1459
AccB7I	CCANNNNNTGG	3 cut(s)	511, 583, 1565
AccII	CGCG	1 cut(s)	1471
AciI	CCGC	2 cut(s)	302, 807
AclWI	GGATC	1 cut(s)	1496
AcsI	RAATTY	3 cut(s)	731, 1060, 1323
AcuI	CTGAAG	5 cut(s)	474, 498, 780, 848, 1157
AfaI	GTAC	2 cut(s)	135, 904
AfiI	CCNNNNNNNGG	4 cut(s)	511, 583, 1056, 1565
AflIII	ACRYGT	1 cut(s)	1469
AjuI	GAANNNNNNNTTGG	2 cut(s)	1456, 1488
Alw21I	GWGCWC	1 cut(s)	1014
Alw26I	GTCTC	2 cut(s)	806, 1537
AlwI	GGATC	1 cut(s)	1496
AoxI	GGCC	2 cut(s)	948, 1413
ApeKI	GCWGC	8 cut(s)	125, 203, 449, 473, 545, 1286, 1370, 1373
ApoI	RAATTY	3 cut(s)	731, 1060, 1323
Asp700I	GAANNNNTTC	9 cut(s)	387, 435, 459, 483, 531, 555, 603, 627, 836
AspS9I	GGNCC	3 cut(s)	235, 949, 1504
AsuHPI	GGTGA	2 cut(s)	316, 1253
AsuII	TTCGAA	1 cut(s)	875
AvaII	GGWCC	2 cut(s)	235, 1504
BbsI	GAAGAC	1 cut(s)	993
Bbv12I	GWGCWC	1 cut(s)	1014
BbvI	GCAGC	8 cut(s)	137, 215, 436, 460, 532, 1273, 1360, 1382
BccI	CCATC	6 cut(s)	65, 265, 701, 848, 931, 1016
BcoDI	GTCTC	2 cut(s)	806, 1537
BfaI	CTAG	1 cut(s)	1218
BfmI	CTRYAG	1 cut(s)	1278
BfuAI	ACCTGC	2 cut(s)	1049, 1459
BisI	GCNGC	9 cut(s)	126, 204, 450, 474, 546, 807, 1287, 1371, 1374
BlsI	GCNGC	9 cut(s)	127, 205, 451, 475, 547, 808, 1288, 1372, 1375
Bme18I	GGWCC	2 cut(s)	235, 1504
BmgT120I	GGNCC	3 cut(s)	235, 949, 1504
BmiI	GGNNCC	4 cut(s)	17, 237, 639, 1505
BmsI	GCATC	5 cut(s)	364, 388, 460, 556, 775
BpiI	GAAGAC	1 cut(s)	993
Bpu10I	CCTNAGC	1 cut(s)	1302
Bpu14I	TTCGAA	1 cut(s)	875
BsaJI	CCNNGG	2 cut(s)	1463, 1559
Bsc4I	CCNNNNNNNGG	4 cut(s)	511, 583, 1056, 1565
Bse118I	RCCGGY	1 cut(s)	1014
BseDI	CCNNGG	2 cut(s)	1463, 1559
BseGI	GGATG	9 cut(s)	379, 403, 475, 499, 571, 712, 790, 859, 1027
BseLI	CCNNNNNNNGG	4 cut(s)	511, 583, 1056, 1565
BseMII	CTCAG	6 cut(s)	254, 855, 920, 1227, 1305, 1350
BseRI	GAGGAG	2 cut(s)	765, 768
BseXI	GCAGC	8 cut(s)	137, 215, 436, 460, 532, 1273, 1360, 1382
BseYI	CCCAGC	1 cut(s)	1256
BsgI	GTGCAG	5 cut(s)	1027, 1198, 1332, 1389, 1559
Bsh1236I	CGCG	1 cut(s)	1471
BshFI	GGCC	2 cut(s)	950, 1415
BsiHKAI	GWGCWC	1 cut(s)	1014
BsiSI	CCGG	1 cut(s)	1015
BslFI	GGGAC	1 cut(s)	1517
BslI	CCNNNNNNNGG	4 cut(s)	511, 583, 1056, 1565
BsmAI	GTCTC	2 cut(s)	806, 1537
BsmFI	GGGAC	1 cut(s)	1517
BsnI	GGCC	2 cut(s)	950, 1415
Bsp119I	TTCGAA	1 cut(s)	875
Bsp1286I	GDGCHC	1 cut(s)	1014
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	318, 1488
BspACI	CCGC	2 cut(s)	302, 807
BspANI	GGCC	2 cut(s)	950, 1415
BspCNI	CTCAG	6 cut(s)	253, 856, 919, 1228, 1306, 1351
BspFNI	CGCG	1 cut(s)	1471
BspLI	GGNNCC	4 cut(s)	17, 237, 639, 1505
BspMI	ACCTGC	2 cut(s)	1049, 1459
BspPI	GGATC	1 cut(s)	1496
BspT104I	TTCGAA	1 cut(s)	875
BsrFI	RCCGGY	1 cut(s)	1014
BsrGI	TGTACA	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	1014
BssECI	CCNNGG	2 cut(s)	1463, 1559
BssMI	GATC	2 cut(s)	318, 1488
BssT1I	CCWWGG	2 cut(s)	1463, 1559
Bst4CI	ACNGT	5 cut(s)	109, 121, 218, 924, 1006
Bst6I	CTCTTC	1 cut(s)	872
BstAPI	GCANNNNNTGC	1 cut(s)	1050
BstAUI	TGTACA	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	875
BstDEI	CTNAG	8 cut(s)	240, 279, 864, 906, 1236, 1302, 1314, 1359
BstENI	CCTNNNNNAGG	1 cut(s)	1054
BstF5I	GGATG	9 cut(s)	379, 403, 475, 499, 571, 712, 790, 859, 1027
BstFNI	CGCG	1 cut(s)	1471
BstKTI	GATC	2 cut(s)	321, 1491
BstMAI	GTCTC	2 cut(s)	806, 1537
BstMBI	GATC	2 cut(s)	318, 1488
BstMWI	GCNNNNNNNGC	3 cut(s)	1050, 1283, 1451
BstNSI	RCATGY	1 cut(s)	698
BstSFI	CTRYAG	1 cut(s)	1278
BstUI	CGCG	1 cut(s)	1471
BstV1I	GCAGC	8 cut(s)	137, 215, 436, 460, 532, 1273, 1360, 1382
BstV2I	GAAGAC	1 cut(s)	993
BsuRI	GGCC	2 cut(s)	950, 1415
BtsCI	GGATG	9 cut(s)	379, 403, 475, 499, 571, 712, 790, 859, 1027
BtsI	GCAGTG	2 cut(s)	339, 988
BtsIMutI	CAGTG	6 cut(s)	223, 339, 929, 988, 1002, 1233
BveI	ACCTGC	2 cut(s)	1049, 1459
Cfr10I	RCCGGY	1 cut(s)	1014
Cfr13I	GGNCC	3 cut(s)	235, 949, 1504
CseI	GACGC	1 cut(s)	1477
Csp6I	GTAC	2 cut(s)	134, 903
CspCI	CAANNNNNGTGG	2 cut(s)	1278, 1313
CviAII	CATG	1 cut(s)	695
CviQI	GTAC	2 cut(s)	134, 903
DdeI	CTNAG	8 cut(s)	240, 279, 864, 906, 1236, 1302, 1314, 1359
DpnI	GATC	2 cut(s)	320, 1490
DpnII	GATC	2 cut(s)	318, 1488
Eam1104I	CTCTTC	1 cut(s)	872
EarI	CTCTTC	1 cut(s)	872
Eco130I	CCWWGG	2 cut(s)	1463, 1559
Eco47I	GGWCC	2 cut(s)	235, 1504
Eco57I	CTGAAG	5 cut(s)	474, 498, 780, 848, 1157
EcoNI	CCTNNNNNAGG	1 cut(s)	1054
EcoO109I	RGGNCCY	2 cut(s)	235, 949
EcoT14I	CCWWGG	2 cut(s)	1463, 1559
ErhI	CCWWGG	2 cut(s)	1463, 1559
FaeI	CATG	1 cut(s)	698
FaqI	GGGAC	1 cut(s)	1517
FatI	CATG	1 cut(s)	694
Fnu4HI	GCNGC	9 cut(s)	126, 204, 450, 474, 546, 807, 1287, 1371, 1374
FokI	GGATG	9 cut(s)	386, 410, 482, 506, 578, 719, 797, 866, 1034
Fsp4HI	GCNGC	9 cut(s)	126, 204, 450, 474, 546, 807, 1287, 1371, 1374
FspBI	CTAG	1 cut(s)	1218
GluI	GCNGC	9 cut(s)	126, 204, 450, 474, 546, 807, 1287, 1371, 1374
GsaI	CCCAGC	1 cut(s)	1260
HaeIII	GGCC	2 cut(s)	950, 1415
HapII	CCGG	1 cut(s)	1015
HgaI	GACGC	1 cut(s)	1477
Hin1II	CATG	1 cut(s)	698
HincII	GTYRAC	1 cut(s)	1000
HindII	GTYRAC	1 cut(s)	1000
HinfI	GANTC	5 cut(s)	86, 250, 688, 822, 1545
HpaI	GTTAAC	1 cut(s)	1000
HpaII	CCGG	1 cut(s)	1015
HphI	GGTGA	2 cut(s)	316, 1253
Hpy166II	GTNNAC	6 cut(s)	38, 112, 136, 670, 903, 1000
Hpy188I	TCNGA	1 cut(s)	406
Hpy8I	GTNNAC	6 cut(s)	38, 112, 136, 670, 903, 1000
HpyAV	CCTTC	7 cut(s)	364, 755, 1120, 1138, 1312, 1357, 1491
HpyCH4III	ACNGT	5 cut(s)	109, 121, 218, 924, 1006
HpyCH4IV	ACGT	1 cut(s)	996
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1050, 1283, 1451
HpyF3I	CTNAG	8 cut(s)	240, 279, 864, 906, 1236, 1302, 1314, 1359
HpySE526I	ACGT	1 cut(s)	996
Hsp92II	CATG	1 cut(s)	698
KspAI	GTTAAC	1 cut(s)	1000
Kzo9I	GATC	2 cut(s)	318, 1488
LmnI	GCTCC	4 cut(s)	21, 755, 1009, 1253
Lsp1109I	GCAGC	8 cut(s)	137, 215, 436, 460, 532, 1273, 1360, 1382
LweI	GCATC	5 cut(s)	364, 388, 460, 556, 775
MaeI	CTAG	1 cut(s)	1218
MaeII	ACGT	1 cut(s)	996
MaeIII	GTNAC	4 cut(s)	25, 337, 1102, 1309
MalI	GATC	2 cut(s)	320, 1490
MboI	GATC	2 cut(s)	318, 1488
MhlI	GDGCHC	1 cut(s)	1014
MluI	ACGCGT	1 cut(s)	1469
MlyI	GAGTC	2 cut(s)	80, 1539
MmeI	TCCRAC	1 cut(s)	429
MroXI	GAANNNNTTC	9 cut(s)	387, 435, 459, 483, 531, 555, 603, 627, 836
MseI	TTAA	5 cut(s)	735, 999, 1158, 1166, 1482
MspA1I	CMGCKG	1 cut(s)	1373
MspI	CCGG	1 cut(s)	1015
MvnI	CGCG	1 cut(s)	1471
MwoI	GCNNNNNNNGC	3 cut(s)	1050, 1283, 1451
NdeII	GATC	2 cut(s)	318, 1488
NlaIII	CATG	1 cut(s)	698
NlaIV	GGNNCC	4 cut(s)	17, 237, 639, 1505
NmuCI	GTSAC	2 cut(s)	337, 1102
NspI	RCATGY	1 cut(s)	698
NspV	TTCGAA	1 cut(s)	875
PaqCI	CACCTGC	1 cut(s)	1049
PdmI	GAANNNNTTC	9 cut(s)	387, 435, 459, 483, 531, 555, 603, 627, 836
PfeI	GAWTC	3 cut(s)	250, 688, 822
PflMI	CCANNNNNTGG	3 cut(s)	511, 583, 1565
PkrI	GCNGC	9 cut(s)	127, 205, 451, 475, 547, 808, 1288, 1372, 1375
PleI	GAGTC	2 cut(s)	80, 1539
PpsI	GAGTC	2 cut(s)	80, 1539
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	1256
PspN4I	GGNNCC	4 cut(s)	17, 237, 639, 1505
PspPI	GGNCC	3 cut(s)	235, 949, 1504
PspPPI	RGGWCCY	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	1373
RsaI	GTAC	2 cut(s)	135, 904
RsaNI	GTAC	2 cut(s)	134, 903
SaqAI	TTAA	5 cut(s)	735, 999, 1158, 1166, 1482
SatI	GCNGC	9 cut(s)	126, 204, 450, 474, 546, 807, 1287, 1371, 1374
Sau3AI	GATC	2 cut(s)	318, 1488
Sau96I	GGNCC	3 cut(s)	235, 949, 1504
SchI	GAGTC	2 cut(s)	80, 1539
SduI	GDGCHC	1 cut(s)	1014
SfaNI	GCATC	5 cut(s)	364, 388, 460, 556, 775
SfcI	CTRYAG	1 cut(s)	1278
SfuI	TTCGAA	1 cut(s)	875
SinI	GGWCC	2 cut(s)	235, 1504
SsiI	CCGC	2 cut(s)	302, 807
SspMI	CTAG	1 cut(s)	1218
StyI	CCWWGG	2 cut(s)	1463, 1559
TaaI	ACNGT	5 cut(s)	109, 121, 218, 924, 1006
TaiI	ACGT	1 cut(s)	999
TaqI	TCGA	3 cut(s)	231, 321, 875
TaqII	GACCGA	1 cut(s)	1521
TatI	WGTACW	2 cut(s)	133, 902
TauI	GCSGC	1 cut(s)	809
TfiI	GAWTC	3 cut(s)	250, 688, 822
Tru1I	TTAA	5 cut(s)	735, 999, 1158, 1166, 1482
Tru9I	TTAA	5 cut(s)	735, 999, 1158, 1166, 1482
TscAI	CASTG	6 cut(s)	223, 346, 929, 988, 1009, 1240
TseFI	GTSAC	2 cut(s)	337, 1102
TseI	GCWGC	8 cut(s)	125, 203, 449, 473, 545, 1286, 1370, 1373
Tsp45I	GTSAC	2 cut(s)	337, 1102
TspDTI	ATGAA	6 cut(s)	38, 396, 431, 810, 899, 1455
TspGWI	ACGGA	1 cut(s)	978
TspRI	CASTG	6 cut(s)	223, 346, 929, 988, 1009, 1240
Van91I	CCANNNNNTGG	3 cut(s)	511, 583, 1565
VpaK11BI	GGWCC	2 cut(s)	235, 1504
XagI	CCTNNNNNAGG	1 cut(s)	1054
XapI	RAATTY	3 cut(s)	731, 1060, 1323
XceI	RCATGY	1 cut(s)	698
XmnI	GAANNNNTTC	9 cut(s)	387, 435, 459, 483, 531, 555, 603, 627, 836
XspI	CTAG	1 cut(s)	1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.