RLG00000020590

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000914
Physical Location & Seq
Forward (+)
66507870 .. 66511427
3558 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020590

Sequence Viewer

Length: 1425 bp
ATGGAGGTTGATAAGGTGCAAAAGGGTGATGATACAAGGAATAATCACACAAAACCAGTGAGAAGAAAATCTCCGGCACGTAGGATAAAGTTTCCAAGCACTAGAGTAAAGAGACAAAAGCATAAAGAAGTGGAACAAGACAGGGAAGAAGAGGAGGATGAAGAAAATGAGGAAGCTGAGGATGAAAAAGACAAAGAAGAACAAGACGGGGTAGAACCGGATAATGAAGAAGAGGAGGAGGAAGAAGAAAAGAATGATGGAGCAAGGAACAGTGGCAAAGACCAGAAACAATCATATTGCCAATACAGGTGCAATATGATTGCCTTCCATGACGTGCTTCATAAAGTGTATGAGCAGCTCAATCGTGAAGAAAAGATGAGATTGAAAGCTGAGTTGAAGAAGACGCCATTTTGGAACTTGATTGAAGCTTATGACAAGGGATTGATGACTAAGAACACAACTGCAAAATCAGATCGAGAGATGCATAGGTTAGTGCAATGCTACAAGCCGGCTTTGAAGAAATTTAAGTTTGGAAACAAGTTGGCAGAAATAAGTGTATCGGATGTGCACTACATTTTGGGTTTGCCAAACCAAAAATTAGCTCTCATGGTGCCAAACCCAATAGATGATCCTAAGAAGCCGACTGATCATCCTCTTGTTCAAAGGTTCTTTGCAAATGACCGAAGGATAAAAAAAGCAAGAATCATGAGCTGTATTGATGAGCAGTTAAGGGAAAAAGTTACGGGGTGGATAGAGAACATGACAAAGTTGCTGCTACTGCATCTGTTCATCACACTACTGTTTGCAAGCTCGGGGTCAACCTTAGGATGGAGCTTTGTGAAATGCATCACGGATATTGAGACAATGAGGAGATATAACTGGGCACGAGCTGTTAGAGACTATTTGCTATTGTGTTTGCAAGCTGCCACAAAGGGAAAAGCAAGGCAAATCAGTGGATGTGTAACATTAATCCCGTATTGGATATCTGAGAGAAGTACTATGCTTGTTGAAATTGAAGGCAGAGAAGCAATGACTCCAGGGTTCGTCAAGTGGAGTCTCCCTCAATTCACAAAGGAATTGCAGAAAAGGCAAGTTGATGAAATAGAGATTGATAATGCAGTTCCCGACAACAATAGAAGCAAACATGGCGAGGAAAACAGTGACGATGACTTTGAGAACCCTCCATCAAAACATGTTGCTACTGCACAGGCAAAGGGGCAGAAAAGACAAAGAGAAGAAAAGAAGGTCACGGTAGCTGCCAAAAAACCAGCCAAAAAGCGGGTGGCAGAAAAGAGAGCAAAAAGTAAAGAAAATAAGATCTCGAATGAGGATGCTACTGCACCAGCTGAAAAGGAAAAGCGTAGAAATGAAGAAGAGATAGTGATAATGAATCAGAAGGTTTCGAAGATGAACATGAAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

475

Amino Acids

55.26

Weight (kDa)

8.83

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 162 - 355 2.2e-06 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 610
AciI CCGC 1 cut(s) 1279
AclWI GGATC 1 cut(s) 623
AcsI RAATTY 1 cut(s) 521
AcyI GRCGYC 1 cut(s) 404
AfaI GTAC 1 cut(s) 997
AfiI CCNNNNNNNGG 2 cut(s) 828, 1278
AflIII ACRYGT 1 cut(s) 1192
AgsI TTSAA 7 cut(s) 385, 397, 425, 517, 662, 1010, 1016
AjiI CACGTC 1 cut(s) 334
AjnI CCWGG 1 cut(s) 1036
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 4 cut(s) 106, 854, 891, 1061
Alw44I GTGCAC 1 cut(s) 566
AlwI GGATC 1 cut(s) 623
Ama87I CYCGRG 1 cut(s) 811
ApaLI GTGCAC 1 cut(s) 566
ApeKI GCWGC 4 cut(s) 355, 772, 923, 1256
ApoI RAATTY 1 cut(s) 521
ArsI GACNNNNNNTTYG 2 cut(s) 1154, 1186
AseI ATTAAT 1 cut(s) 968
AsuHPI GGTGA 1 cut(s) 38
AsuII TTCGAA 1 cut(s) 1403
AvaI CYCGRG 1 cut(s) 811
AxyI CCTNAGG 1 cut(s) 823
BaeGI GKGCMC 2 cut(s) 570, 886
BanI GGYRCC 1 cut(s) 610
BauI CACGAG 1 cut(s) 885
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 570
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 4 cut(s) 367, 759, 910, 1243
BccI CCATC 3 cut(s) 251, 822, 1192
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 1038
BclI TGATCA 1 cut(s) 646
BcoDI GTCTC 4 cut(s) 106, 854, 891, 1061
BfaI CTAG 1 cut(s) 102
BglII AGATCT 1 cut(s) 1317
BisI GCNGC 4 cut(s) 356, 773, 924, 1257
BlsI GCNGC 4 cut(s) 357, 774, 925, 1258
BmcAI AGTACT 1 cut(s) 997
Bme1390I CCNGG 1 cut(s) 1038
BmeT110I CYCGRG 1 cut(s) 811
BmgBI CACGTC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 612
BmrFI CCNGG 1 cut(s) 1038
BmrI ACTGGG 1 cut(s) 889
BmsI GCATC 4 cut(s) 471, 790, 855, 1321
BmuI ACTGGG 1 cut(s) 889
BpiI GAAGAC 1 cut(s) 407
BplI GAGNNNNNCTC 2 cut(s) 1045, 1077
BpmI CTGGAG 1 cut(s) 1020
Bpu10I CCTNAGC 1 cut(s) 177
Bpu14I TTCGAA 1 cut(s) 1403
BsaAI YACGTR 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 1037
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 828, 1278
Bse118I RCCGGY 1 cut(s) 508
Bse1I ACTGG 2 cut(s) 56, 884
Bse21I CCTNAGG 1 cut(s) 823
Bse3DI GCAATG 2 cut(s) 503, 1035
BseBI CCWGG 1 cut(s) 1038
BseDI CCNNGG 1 cut(s) 1037
BseGI GGATG 7 cut(s) 163, 187, 568, 649, 833, 962, 1336
BseLI CCNNNNNNNGG 2 cut(s) 828, 1278
BseMI GCAATG 2 cut(s) 503, 1035
BseMII CTCAG 3 cut(s) 168, 381, 978
BseNI ACTGG 2 cut(s) 56, 884
BseRI GAGGAG 4 cut(s) 167, 248, 251, 883
BseSI GKGCMC 2 cut(s) 570, 886
BseXI GCAGC 4 cut(s) 367, 759, 910, 1243
BsgI GTGCAG 2 cut(s) 1188, 1323
BshNI GGYRCC 1 cut(s) 610
BsiHKAI GWGCWC 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 811
BsiSI CCGG 3 cut(s) 74, 218, 509
BslI CCNNNNNNNGG 2 cut(s) 828, 1278
BsmAI GTCTC 4 cut(s) 106, 854, 891, 1061
BsoBI CYCGRG 1 cut(s) 811
Bsp119I TTCGAA 1 cut(s) 1403
Bsp1286I GDGCHC 2 cut(s) 570, 886
Bsp143I GATC 4 cut(s) 472, 628, 646, 1317
BspACI CCGC 1 cut(s) 1279
BspCNI CTCAG 3 cut(s) 169, 382, 979
BspHI TCATGA 1 cut(s) 705
BspLI GGNNCC 1 cut(s) 612
BspPI GGATC 1 cut(s) 623
BspT104I TTCGAA 1 cut(s) 1403
BspT107I GGYRCC 1 cut(s) 610
BsrDI GCAATG 2 cut(s) 503, 1035
BsrFI RCCGGY 1 cut(s) 508
BsrI ACTGG 2 cut(s) 56, 884
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 1 cut(s) 1037
BssMI GATC 4 cut(s) 472, 628, 646, 1317
BssNI GRCGYC 1 cut(s) 404
BssSI CACGAG 1 cut(s) 885
Bst2BI CACGAG 1 cut(s) 885
Bst2UI CCWGG 1 cut(s) 1038
Bst4CI ACNGT 4 cut(s) 272, 801, 1160, 1252
Bst6I CTCTTC 3 cut(s) 144, 225, 1368
BstACI GRCGYC 1 cut(s) 404
BstBAI YACGTR 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 1403
BstC8I GCNNGC 3 cut(s) 510, 808, 921
BstDEI CTNAG 6 cut(s) 177, 390, 450, 633, 823, 987
BstF5I GGATG 7 cut(s) 163, 187, 568, 649, 833, 962, 1336
BstKTI GATC 4 cut(s) 475, 631, 649, 1320
BstMAI GTCTC 4 cut(s) 106, 854, 891, 1061
BstMBI GATC 4 cut(s) 472, 628, 646, 1317
BstMWI GCNNNNNNNGC 3 cut(s) 778, 1087, 1146
BstNI CCWGG 1 cut(s) 1038
BstNSI RCATGY 1 cut(s) 1196
BstSCI CCNGG 1 cut(s) 1036
BstSLI GKGCMC 2 cut(s) 570, 886
BstV1I GCAGC 4 cut(s) 367, 759, 910, 1243
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 1317
BstYI RGATCY 1 cut(s) 1317
Bsu36I CCTNAGG 1 cut(s) 823
BtrI CACGTC 1 cut(s) 334
BtsCI GGATG 7 cut(s) 163, 187, 568, 649, 833, 962, 1336
BtsIMutI CAGTG 4 cut(s) 63, 277, 958, 1165
Cac8I GCNNGC 3 cut(s) 510, 808, 921
CciI TCATGA 1 cut(s) 705
Cfr10I RCCGGY 1 cut(s) 508
CseI GACGC 1 cut(s) 412
Csp6I GTAC 1 cut(s) 996
CviAII CATG 8 cut(s) 329, 607, 706, 760, 1145, 1193, 1414, 1422
CviQI GTAC 1 cut(s) 996
DdeI CTNAG 6 cut(s) 177, 390, 450, 633, 823, 987
DpnI GATC 4 cut(s) 474, 630, 648, 1319
DpnII GATC 4 cut(s) 472, 628, 646, 1317
Eam1104I CTCTTC 3 cut(s) 144, 225, 1368
EarI CTCTTC 3 cut(s) 144, 225, 1368
Eco32I GATATC 1 cut(s) 984
Eco81I CCTNAGG 1 cut(s) 823
Eco88I CYCGRG 1 cut(s) 811
EcoRII CCWGG 1 cut(s) 1036
EcoRV GATATC 1 cut(s) 984
EcoT22I ATGCAT 2 cut(s) 486, 848
FaeI CATG 8 cut(s) 332, 610, 709, 763, 1148, 1196, 1417, 1425
FatI CATG 8 cut(s) 328, 606, 705, 759, 1144, 1192, 1413, 1421
FauI CCCGC 1 cut(s) 1272
FbaI TGATCA 1 cut(s) 646
Fnu4HI GCNGC 4 cut(s) 356, 773, 924, 1257
FokI GGATG 7 cut(s) 170, 194, 575, 636, 840, 969, 1343
Fsp4HI GCNGC 4 cut(s) 356, 773, 924, 1257
FspBI CTAG 1 cut(s) 102
GluI GCNGC 4 cut(s) 356, 773, 924, 1257
GsuI CTGGAG 1 cut(s) 1020
HapII CCGG 3 cut(s) 74, 218, 509
HgaI GACGC 1 cut(s) 412
Hin1I GRCGYC 1 cut(s) 404
Hin1II CATG 8 cut(s) 332, 610, 709, 763, 1148, 1196, 1417, 1425
HincII GTYRAC 1 cut(s) 819
HindII GTYRAC 1 cut(s) 819
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 4 cut(s) 702, 1033, 1054, 1390
HpaII CCGG 3 cut(s) 74, 218, 509
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 2 cut(s) 568, 819
Hpy188I TCNGA 4 cut(s) 472, 562, 988, 1395
Hpy188III TCNNGA 5 cut(s) 365, 476, 706, 1124, 1321
Hpy8I GTNNAC 2 cut(s) 568, 819
HpyAV CCTTC 5 cut(s) 334, 678, 1010, 1237, 1390
HpyCH4III ACNGT 4 cut(s) 272, 801, 1160, 1252
HpyCH4IV ACGT 2 cut(s) 79, 333
HpyF10VI GCNNNNNNNGC 3 cut(s) 778, 1087, 1146
HpyF3I CTNAG 6 cut(s) 177, 390, 450, 633, 823, 987
HpySE526I ACGT 2 cut(s) 79, 333
Hsp92I GRCGYC 1 cut(s) 404
Hsp92II CATG 8 cut(s) 332, 610, 709, 763, 1148, 1196, 1417, 1425
KroI GCCGGC 1 cut(s) 508
KroNI GCCGGC 1 cut(s) 510
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 4 cut(s) 472, 628, 646, 1317
LmnI GCTCC 2 cut(s) 260, 831
Lsp1109I GCAGC 4 cut(s) 367, 759, 910, 1243
LweI GCATC 4 cut(s) 471, 790, 855, 1321
MaeI CTAG 1 cut(s) 102
MaeII ACGT 2 cut(s) 79, 333
MaeIII GTNAC 4 cut(s) 739, 961, 1160, 1246
MalI GATC 4 cut(s) 474, 630, 648, 1319
MboI GATC 4 cut(s) 472, 628, 646, 1317
MflI RGATCY 1 cut(s) 1317
MhlI GDGCHC 2 cut(s) 570, 886
MluCI AATT 5 cut(s) 521, 596, 1011, 1064, 1076
MlyI GAGTC 2 cut(s) 1027, 1063
Mph1103I ATGCAT 2 cut(s) 486, 848
MroNI GCCGGC 1 cut(s) 508
MseI TTAA 3 cut(s) 525, 728, 968
MspA1I CMGCKG 1 cut(s) 1346
MspI CCGG 3 cut(s) 74, 218, 509
MspR9I CCNGG 1 cut(s) 1038
MvaI CCWGG 1 cut(s) 1038
MwoI GCNNNNNNNGC 3 cut(s) 778, 1087, 1146
NaeI GCCGGC 1 cut(s) 510
NdeII GATC 4 cut(s) 472, 628, 646, 1317
NgoMIV GCCGGC 1 cut(s) 508
NlaIII CATG 8 cut(s) 332, 610, 709, 763, 1148, 1196, 1417, 1425
NlaIV GGNNCC 1 cut(s) 612
NmuCI GTSAC 2 cut(s) 1160, 1246
NsiI ATGCAT 2 cut(s) 486, 848
NspI RCATGY 1 cut(s) 1196
NspV TTCGAA 1 cut(s) 1403
PagI TCATGA 1 cut(s) 705
PciI ACATGT 1 cut(s) 1192
PdiI GCCGGC 1 cut(s) 510
PfeI GAWTC 2 cut(s) 702, 1390
PkrI GCNGC 4 cut(s) 357, 774, 925, 1258
PleI GAGTC 2 cut(s) 1027, 1062
PpsI GAGTC 2 cut(s) 1027, 1062
Ppu21I YACGTR 1 cut(s) 80
PscI ACATGT 1 cut(s) 1192
PshBI ATTAAT 1 cut(s) 968
Psp6I CCWGG 1 cut(s) 1036
PspGI CCWGG 1 cut(s) 1036
PspN4I GGNNCC 1 cut(s) 612
PsuI RGATCY 1 cut(s) 1317
PvuII CAGCTG 1 cut(s) 1346
RsaI GTAC 1 cut(s) 997
RsaNI GTAC 1 cut(s) 996
SaqAI TTAA 3 cut(s) 525, 728, 968
SatI GCNGC 4 cut(s) 356, 773, 924, 1257
Sau3AI GATC 4 cut(s) 472, 628, 646, 1317
ScaI AGTACT 1 cut(s) 997
SchI GAGTC 2 cut(s) 1027, 1063
ScrFI CCNGG 1 cut(s) 1038
SduI GDGCHC 2 cut(s) 570, 886
SfaNI GCATC 4 cut(s) 471, 790, 855, 1321
SfuI TTCGAA 1 cut(s) 1403
Sse9I AATT 5 cut(s) 521, 596, 1011, 1064, 1076
SsiI CCGC 1 cut(s) 1279
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 1036
TaaI ACNGT 4 cut(s) 272, 801, 1160, 1252
TaiI ACGT 2 cut(s) 82, 336
TaqI TCGA 3 cut(s) 475, 1322, 1403
TaqII GACCGA 1 cut(s) 696
TasI AATT 5 cut(s) 521, 596, 1011, 1064, 1076
TatI WGTACW 1 cut(s) 995
TfiI GAWTC 2 cut(s) 702, 1390
Tru1I TTAA 3 cut(s) 525, 728, 968
Tru9I TTAA 3 cut(s) 525, 728, 968
TscAI CASTG 4 cut(s) 63, 277, 958, 1165
TseFI GTSAC 2 cut(s) 1160, 1246
TseI GCWGC 4 cut(s) 355, 772, 923, 1256
Tsp45I GTSAC 2 cut(s) 1160, 1246
TspDTI ATGAA 9 cut(s) 174, 198, 240, 329, 778, 1113, 1383, 1403, 1424
TspGWI ACGGA 1 cut(s) 866
TspRI CASTG 4 cut(s) 63, 277, 958, 1165
VneI GTGCAC 1 cut(s) 566
VspI ATTAAT 1 cut(s) 968
XapI RAATTY 1 cut(s) 521
XceI RCATGY 1 cut(s) 1196
XcmI CCANNNNNNNNNTGG 1 cut(s) 1279
XspI CTAG 1 cut(s) 102
ZrmI AGTACT 1 cut(s) 997
Zsp2I ATGCAT 2 cut(s) 486, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.