Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 241 |
| AciI | CCGC | 2 cut(s) | 176, 374 |
| AclWI | GGATC | 3 cut(s) | 57, 186, 233 |
| AcsI | RAATTY | 2 cut(s) | 40, 290 |
| AfaI | GTAC | 2 cut(s) | 224, 284 |
| AgsI | TTSAA | 2 cut(s) | 190, 469 |
| AluBI | AGCT | 6 cut(s) | 92, 110, 131, 149, 393, 410 |
| AluI | AGCT | 6 cut(s) | 92, 110, 131, 149, 393, 410 |
| AlwI | GGATC | 3 cut(s) | 57, 186, 233 |
| Aor13HI | TCCGGA | 1 cut(s) | 241 |
| AoxI | GGCC | 2 cut(s) | 120, 567 |
| ApoI | RAATTY | 2 cut(s) | 40, 290 |
| BbsI | GAAGAC | 1 cut(s) | 476 |
| BccI | CCATC | 1 cut(s) | 742 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 113, 131, 147, 165 |
| BfaI | CTAG | 1 cut(s) | 710 |
| BmsI | GCATC | 2 cut(s) | 25, 568 |
| BpiI | GAAGAC | 1 cut(s) | 476 |
| BsaJI | CCNNGG | 1 cut(s) | 650 |
| BsaWI | WCCGGW | 1 cut(s) | 241 |
| Bse3DI | GCAATG | 1 cut(s) | 360 |
| BseAI | TCCGGA | 1 cut(s) | 241 |
| BseDI | CCNNGG | 1 cut(s) | 650 |
| BseGI | GGATG | 1 cut(s) | 436 |
| BseMI | GCAATG | 1 cut(s) | 360 |
| BseMII | CTCAG | 3 cut(s) | 18, 108, 147 |
| BseRI | GAGGAG | 1 cut(s) | 579 |
| BsgI | GTGCAG | 1 cut(s) | 746 |
| Bsh1285I | CGRYCG | 1 cut(s) | 694 |
| BshFI | GGCC | 2 cut(s) | 122, 569 |
| BsiEI | CGRYCG | 1 cut(s) | 694 |
| BsiSI | CCGG | 1 cut(s) | 242 |
| BsnI | GGCC | 2 cut(s) | 122, 569 |
| Bsp13I | TCCGGA | 1 cut(s) | 241 |
| Bsp143I | GATC | 5 cut(s) | 49, 178, 238, 659, 691 |
| BspACI | CCGC | 2 cut(s) | 176, 374 |
| BspANI | GGCC | 2 cut(s) | 122, 569 |
| BspCNI | CTCAG | 3 cut(s) | 19, 109, 148 |
| BspEI | TCCGGA | 1 cut(s) | 241 |
| BspPI | GGATC | 3 cut(s) | 57, 186, 233 |
| BsrDI | GCAATG | 1 cut(s) | 360 |
| BssECI | CCNNGG | 1 cut(s) | 650 |
| BssMI | GATC | 5 cut(s) | 49, 178, 238, 659, 691 |
| BssT1I | CCWWGG | 1 cut(s) | 650 |
| Bst4CI | ACNGT | 1 cut(s) | 331 |
| Bst6I | CTCTTC | 5 cut(s) | 69, 198, 213, 489, 558 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 173 |
| BstC8I | GCNNGC | 1 cut(s) | 408 |
| BstDEI | CTNAG | 3 cut(s) | 27, 117, 156 |
| BstF5I | GGATG | 1 cut(s) | 436 |
| BstKTI | GATC | 5 cut(s) | 52, 181, 241, 662, 694 |
| BstMBI | GATC | 5 cut(s) | 49, 178, 238, 659, 691 |
| BstMCI | CGRYCG | 1 cut(s) | 694 |
| BstV2I | GAAGAC | 1 cut(s) | 476 |
| BsuRI | GGCC | 2 cut(s) | 122, 569 |
| BtsCI | GGATG | 1 cut(s) | 436 |
| BtsIMutI | CAGTG | 2 cut(s) | 306, 336 |
| Cac8I | GCNNGC | 1 cut(s) | 408 |
| Csp6I | GTAC | 2 cut(s) | 223, 283 |
| CviAII | CATG | 1 cut(s) | 626 |
| CviQI | GTAC | 2 cut(s) | 223, 283 |
| DdeI | CTNAG | 3 cut(s) | 27, 117, 156 |
| DpnI | GATC | 5 cut(s) | 51, 180, 240, 661, 693 |
| DpnII | GATC | 5 cut(s) | 49, 178, 238, 659, 691 |
| Eam1104I | CTCTTC | 5 cut(s) | 69, 198, 213, 489, 558 |
| EarI | CTCTTC | 5 cut(s) | 69, 198, 213, 489, 558 |
| Eco130I | CCWWGG | 1 cut(s) | 650 |
| EcoT14I | CCWWGG | 1 cut(s) | 650 |
| ErhI | CCWWGG | 1 cut(s) | 650 |
| FaeI | CATG | 1 cut(s) | 629 |
| FaiI | YATR | 6 cut(s) | 71, 371, 414, 416, 561, 627 |
| FatI | CATG | 1 cut(s) | 625 |
| FauI | CCCGC | 1 cut(s) | 367 |
| FokI | GGATG | 1 cut(s) | 443 |
| FspBI | CTAG | 1 cut(s) | 710 |
| HaeIII | GGCC | 2 cut(s) | 122, 569 |
| HapII | CCGG | 1 cut(s) | 242 |
| Hin1II | CATG | 1 cut(s) | 629 |
| HindIII | AAGCTT | 1 cut(s) | 408 |
| HinfI | GANTC | 1 cut(s) | 675 |
| HpaII | CCGG | 1 cut(s) | 242 |
| Hpy188I | TCNGA | 1 cut(s) | 696 |
| Hpy188III | TCNNGA | 3 cut(s) | 187, 242, 388 |
| Hpy99I | CGWCG | 1 cut(s) | 290 |
| HpyAV | CCTTC | 1 cut(s) | 707 |
| HpyCH4III | ACNGT | 1 cut(s) | 331 |
| HpyCH4V | TGCA | 9 cut(s) | 38, 95, 134, 167, 274, 396, 522, 544, 727 |
| HpyF3I | CTNAG | 3 cut(s) | 27, 117, 156 |
| Hsp92II | CATG | 1 cut(s) | 629 |
| Kpn2I | TCCGGA | 1 cut(s) | 241 |
| Kzo9I | GATC | 5 cut(s) | 49, 178, 238, 659, 691 |
| LmnI | GCTCC | 4 cut(s) | 334, 592, 610, 640 |
| LpnPI | CCDG | 7 cut(s) | 71, 147, 217, 255, 606, 621, 633 |
| LweI | GCATC | 2 cut(s) | 25, 568 |
| MaeI | CTAG | 1 cut(s) | 710 |
| MalI | GATC | 5 cut(s) | 51, 180, 240, 661, 693 |
| MboI | GATC | 5 cut(s) | 49, 178, 238, 659, 691 |
| MluCI | AATT | 3 cut(s) | 40, 290, 760 |
| MmeI | TCCRAC | 1 cut(s) | 662 |
| MnlI | CCTC | 7 cut(s) | 22, 112, 151, 559, 600, 715, 741 |
| MroI | TCCGGA | 1 cut(s) | 241 |
| MseI | TTAA | 2 cut(s) | 45, 763 |
| MspI | CCGG | 1 cut(s) | 242 |
| NdeII | GATC | 5 cut(s) | 49, 178, 238, 659, 691 |
| NlaIII | CATG | 1 cut(s) | 629 |
| PfeI | GAWTC | 1 cut(s) | 675 |
| Ple19I | CGATCG | 1 cut(s) | 694 |
| PvuI | CGATCG | 1 cut(s) | 694 |
| RsaI | GTAC | 2 cut(s) | 224, 284 |
| RsaNI | GTAC | 2 cut(s) | 223, 283 |
| SaqAI | TTAA | 2 cut(s) | 45, 763 |
| Sau3AI | GATC | 5 cut(s) | 49, 178, 238, 659, 691 |
| SetI | ASST | 8 cut(s) | 94, 112, 133, 151, 395, 412, 718, 726 |
| SfaNI | GCATC | 2 cut(s) | 25, 568 |
| Sse9I | AATT | 3 cut(s) | 40, 290, 760 |
| SsiI | CCGC | 2 cut(s) | 176, 374 |
| SspI | AATATT | 2 cut(s) | 67, 172 |
| SspMI | CTAG | 1 cut(s) | 710 |
| StyI | CCWWGG | 1 cut(s) | 650 |
| TaaI | ACNGT | 1 cut(s) | 331 |
| TaqI | TCGA | 3 cut(s) | 252, 387, 737 |
| TasI | AATT | 3 cut(s) | 40, 290, 760 |
| TatI | WGTACW | 1 cut(s) | 222 |
| TfiI | GAWTC | 1 cut(s) | 675 |
| Tru1I | TTAA | 2 cut(s) | 45, 763 |
| Tru9I | TTAA | 2 cut(s) | 45, 763 |
| TscAI | CASTG | 2 cut(s) | 313, 336 |
| TspRI | CASTG | 2 cut(s) | 313, 336 |
| XapI | RAATTY | 2 cut(s) | 40, 290 |
| XspI | CTAG | 1 cut(s) | 710 |