Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

3701544 .. 3702155

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCTTGTTGAAATTAAAGGCAGAGAAGCAATGACTCCAGGGTGCGTCAAGTGGAGTCTCCCTCAATTCACAAAAGAATTGCAGAAAATGCAAGTTGATGACATAGAGATTGATAATGCAGTTGCCGACAACAATAGAAGCAAACATGGCAAGGAAAACAGTGACGATGACTTTGAGAACCCTCCATCAAAGCATGCTGCTACTGCACAGGCAAAGGGGCAGAAAAGACAAAGAGAAGAAAAGAAGGCCACAGTAGCTGCCAAAAAACCAGCCAAAAAGCGGGTGGCCGAAAAGAGAGCAAAAAGTAAAGAAAATAAGATCTCGAATGAGGGTGCTACTGCACCAGCTGAAAAGGAAAAACGTAGAAATGAAGAAGAGACAGCTGATAATGAATCAGAAGGTTTCGAAGATGAACATGAAGACATGACATTAAGAGATTGGGTAACTACAATGAAAAATTACATTTATAGCAGCTACGTGTACATTTTTACTAAAATCATCTTTGCTTTGTTTTTTAGGTGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

175

Amino Acids

20.2

Weight (kDa)

7.76

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	280
AcoI	YGGCCR	1 cut(s)	285
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	279
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	4 cut(s)	257, 347, 383, 474
AluI	AGCT	4 cut(s)	257, 347, 383, 474
Alw26I	GTCTC	2 cut(s)	62, 371
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	246, 285
ApeKI	GCWGC	3 cut(s)	197, 257, 471
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AsuII	TTCGAA	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	184, 244, 483
BccI	CCATC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	62, 371
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	3 cut(s)	198, 258, 472
BlsI	GCNGC	3 cut(s)	199, 259, 473
Bme1390I	CCNGG	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpmI	CTGGAG	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	184, 244, 483
BsgI	GTGCAG	2 cut(s)	189, 324
BshFI	GGCC	2 cut(s)	248, 287
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	2 cut(s)	62, 371
BsnI	GGCC	2 cut(s)	248, 287
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	2 cut(s)	248, 287
BspT104I	TTCGAA	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	480
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	161, 253
Bst6I	CTCTTC	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstAUI	TGTACA	1 cut(s)	480
BstBAI	YACGTR	1 cut(s)	478
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	195
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	2 cut(s)	62, 371
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 147, 203, 254
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	184, 244, 483
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	248, 287
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	195
CaiI	CAGNNNCTG	1 cut(s)	257
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	4 cut(s)	146, 194, 416, 424
CviJI	RGCY	7 cut(s)	248, 257, 272, 287, 347, 383, 474
CviKI_1	RGCY	7 cut(s)	248, 257, 272, 287, 347, 383, 474
CviQI	GTAC	1 cut(s)	481
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	37
FaeI	CATG	4 cut(s)	149, 197, 419, 427
FaiI	YATR	7 cut(s)	104, 147, 195, 417, 425, 468, 526
FatI	CATG	4 cut(s)	145, 193, 415, 423
FauI	CCCGC	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	198, 258, 472
Fsp4HI	GCNGC	3 cut(s)	198, 258, 472
GluI	GCNGC	3 cut(s)	198, 258, 472
GsuI	CTGGAG	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	248, 287
HgaI	GACGC	1 cut(s)	34
Hin1II	CATG	4 cut(s)	149, 197, 419, 427
HinfI	GANTC	3 cut(s)	34, 55, 392
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	1 cut(s)	397
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	2 cut(s)	238, 392
HpyCH4III	ACNGT	2 cut(s)	161, 253
HpyCH4IV	ACGT	2 cut(s)	361, 477
HpyCH4V	TGCA	5 cut(s)	82, 91, 119, 206, 341
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 147, 203, 254
HpySE526I	ACGT	2 cut(s)	361, 477
Hsp92II	CATG	4 cut(s)	149, 197, 419, 427
Kzo9I	GATC	1 cut(s)	318
LpnPI	CCDG	5 cut(s)	24, 51, 194, 282, 357
Lsp1109I	GCAGC	3 cut(s)	184, 244, 483
MaeII	ACGT	2 cut(s)	361, 477
MaeIII	GTNAC	2 cut(s)	161, 442
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	5 cut(s)	248, 383, 386, 419, 431
MflI	RGATCY	1 cut(s)	318
MluCI	AATT	4 cut(s)	12, 65, 77, 457
MlyI	GAGTC	2 cut(s)	28, 64
MnlI	CCTC	3 cut(s)	72, 192, 322
MseI	TTAA	2 cut(s)	15, 431
MspA1I	CMGCKG	2 cut(s)	347, 383
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	88, 147, 203, 254
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	4 cut(s)	149, 197, 419, 427
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	197
NspV	TTCGAA	1 cut(s)	405
PaeI	GCATGC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	392
PkrI	GCNGC	3 cut(s)	199, 259, 473
PleI	GAGTC	2 cut(s)	28, 63
PpsI	GAGTC	2 cut(s)	28, 63
Ppu21I	YACGTR	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	318
PvuII	CAGCTG	2 cut(s)	347, 383
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
SaqAI	TTAA	2 cut(s)	15, 431
SatI	GCNGC	3 cut(s)	198, 258, 472
Sau3AI	GATC	1 cut(s)	318
SchI	GAGTC	2 cut(s)	28, 64
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	8 cut(s)	259, 349, 364, 385, 403, 476, 480, 521
SfuI	TTCGAA	1 cut(s)	405
SphI	GCATGC	1 cut(s)	197
Sse9I	AATT	4 cut(s)	12, 65, 77, 457
SsiI	CCGC	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	161, 253
TaiI	ACGT	2 cut(s)	364, 480
TaqI	TCGA	2 cut(s)	323, 405
TasI	AATT	4 cut(s)	12, 65, 77, 457
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	2 cut(s)	15, 431
Tru9I	TTAA	2 cut(s)	15, 431
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	3 cut(s)	197, 257, 471
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	5 cut(s)	384, 405, 426, 432, 467
TspRI	CASTG	1 cut(s)	166
XceI	RCATGY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.