Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000473.1

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Reverse (-)

86131 .. 87146

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000473.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgaacaacatgaattttgcgaaaaagattgacgagaataaaggagaggaagggatgcaaacaaaaaccaagagtggagtaaatgtcaatgatatggatttgggtgcaactgaggaagaagaggatgctgcggatggtattagagatgactttagctttgacactggattgagggggcaggaaaatgaaacaaactttgtcgatcaggatcgggatggaactgaaggaggagagccagatcaaatggaaaggaatgaaaaagctattactgaggctgatgatgttgaaaggaacaaaaaagctgctactgaggtcgatgcaaattttatggatcaaaccctgaaaaatattatagaagagattgtgaatgaagctgcaaggaaagaaaaagctgctactgaggccgatgaagctgcaaggaaagccgatgaagctgcaaggaacgacaaagctgctactgaggctggtgcaaatattacggatcaaatcttgaacaacattgtagaagagattgtgaatgaagagtacaagagcagggatgatttgcatttatatggaatgatccggtttggttcgatgaatgggaagacttgttgcaaagtgagtacgacgaatttggctatccggtggacggtgatcggattcccgcgaccggtgaccagaatcctgctgtcacgcccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

25.27

Weight (kDa)

4.5

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	649
AciI	CCGC	2 cut(s)	131, 647
AclWI	GGATC	4 cut(s)	216, 339, 489, 556
AcsI	RAATTY	3 cut(s)	13, 322, 613
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	2 cut(s)	527, 607
AfiI	CCNNNNNNNGG	2 cut(s)	631, 652
AgeI	ACCGGT	1 cut(s)	652
AgsI	TTSAA	2 cut(s)	287, 493
AluBI	AGCT	8 cut(s)	156, 263, 302, 374, 392, 413, 434, 452
AluI	AGCT	8 cut(s)	156, 263, 302, 374, 392, 413, 434, 452
AlwI	GGATC	4 cut(s)	216, 339, 489, 556
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	7 cut(s)	128, 302, 374, 392, 413, 434, 452
ApoI	RAATTY	3 cut(s)	13, 322, 613
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AsiGI	ACCGGT	1 cut(s)	652
AsuHPI	GGTGA	2 cut(s)	646, 667
BbsI	GAAGAC	1 cut(s)	593
BbvI	GCAGC	7 cut(s)	115, 289, 361, 379, 400, 421, 439
BccI	CCATC	2 cut(s)	128, 209
BcgI	CGANNNNNNTGC	6 cut(s)	395, 416, 429, 434, 450, 468
BisI	GCNGC	7 cut(s)	129, 303, 375, 393, 414, 435, 453
BlsI	GCNGC	7 cut(s)	130, 304, 376, 394, 415, 436, 454
BmsI	GCATC	3 cut(s)	45, 115, 307
BpiI	GAAGAC	1 cut(s)	593
BsaBI	GATNNNNATC	1 cut(s)	207
BsaWI	WCCGGW	3 cut(s)	564, 624, 652
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	2 cut(s)	631, 652
Bse118I	RCCGGY	1 cut(s)	652
Bse1I	ACTGG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	207
BseGI	GGATG	5 cut(s)	60, 130, 139, 220, 544
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	631, 652
BseMII	CTCAG	5 cut(s)	102, 261, 300, 390, 450
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	7 cut(s)	115, 289, 361, 379, 400, 421, 439
Bsh1236I	CGCG	1 cut(s)	649
Bsh1285I	CGRYCG	1 cut(s)	653
BshFI	GGCC	1 cut(s)	404
BshTI	ACCGGT	1 cut(s)	652
BsiEI	CGRYCG	1 cut(s)	653
BsiSI	CCGG	3 cut(s)	565, 625, 653
BslI	CCNNNNNNNGG	2 cut(s)	631, 652
BsnI	GGCC	1 cut(s)	404
Bsp143I	GATC	7 cut(s)	202, 208, 238, 331, 481, 561, 636
BspACI	CCGC	2 cut(s)	131, 647
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	5 cut(s)	103, 262, 301, 391, 451
BspFNI	CGCG	1 cut(s)	649
BspPI	GGATC	4 cut(s)	216, 339, 489, 556
BsrFI	RCCGGY	1 cut(s)	652
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	652
BssMI	GATC	7 cut(s)	202, 208, 238, 331, 481, 561, 636
Bst4CI	ACNGT	1 cut(s)	634
Bst6I	CTCTTC	4 cut(s)	114, 351, 501, 516
BstDEI	CTNAG	5 cut(s)	111, 270, 309, 399, 459
BstEII	GGTNACC	1 cut(s)	655
BstF5I	GGATG	5 cut(s)	60, 130, 139, 220, 544
BstFNI	CGCG	1 cut(s)	649
BstKTI	GATC	7 cut(s)	205, 211, 241, 334, 484, 564, 639
BstMBI	GATC	7 cut(s)	202, 208, 238, 331, 481, 561, 636
BstMCI	CGRYCG	1 cut(s)	653
BstMWI	GCNNNNNNNGC	5 cut(s)	401, 410, 422, 431, 461
BstPI	GGTNACC	1 cut(s)	655
BstUI	CGCG	1 cut(s)	649
BstV1I	GCAGC	7 cut(s)	115, 289, 361, 379, 400, 421, 439
BstV2I	GAAGAC	1 cut(s)	593
BsuRI	GGCC	1 cut(s)	404
BtsCI	GGATG	5 cut(s)	60, 130, 139, 220, 544
BtsIMutI	CAGTG	1 cut(s)	162
Cfr10I	RCCGGY	1 cut(s)	652
Csp6I	GTAC	2 cut(s)	526, 606
CspAI	ACCGGT	1 cut(s)	652
CviAII	CATG	1 cut(s)	10
CviQI	GTAC	2 cut(s)	526, 606
DdeI	CTNAG	5 cut(s)	111, 270, 309, 399, 459
DpnI	GATC	7 cut(s)	204, 210, 240, 333, 483, 563, 638
DpnII	GATC	7 cut(s)	202, 208, 238, 331, 481, 561, 636
Eam1104I	CTCTTC	4 cut(s)	114, 351, 501, 516
EarI	CTCTTC	4 cut(s)	114, 351, 501, 516
Eco57I	CTGAAG	1 cut(s)	243
Eco91I	GGTNACC	1 cut(s)	655
EcoO65I	GGTNACC	1 cut(s)	655
FaeI	CATG	1 cut(s)	13
FaiI	YATR	6 cut(s)	11, 95, 329, 353, 553, 555
FatI	CATG	1 cut(s)	9
FauI	CCCGC	1 cut(s)	654
Fnu4HI	GCNGC	7 cut(s)	129, 303, 375, 393, 414, 435, 453
FokI	GGATG	5 cut(s)	67, 137, 146, 227, 551
Fsp4HI	GCNGC	7 cut(s)	129, 303, 375, 393, 414, 435, 453
GluI	GCNGC	7 cut(s)	129, 303, 375, 393, 414, 435, 453
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	3 cut(s)	565, 625, 653
Hin1II	CATG	1 cut(s)	13
HinfI	GANTC	2 cut(s)	642, 663
HpaII	CCGG	3 cut(s)	565, 625, 653
HphI	GGTGA	2 cut(s)	646, 667
Hpy166II	GTNNAC	1 cut(s)	630
Hpy188I	TCNGA	1 cut(s)	641
Hpy188III	TCNNGA	3 cut(s)	206, 212, 490
Hpy8I	GTNNAC	1 cut(s)	630
Hpy99I	CGWCG	1 cut(s)	613
HpyAV	CCTTC	2 cut(s)	44, 218
HpyCH4III	ACNGT	1 cut(s)	634
HpyCH4V	TGCA	9 cut(s)	58, 107, 320, 377, 416, 437, 470, 547, 597
HpyF10VI	GCNNNNNNNGC	5 cut(s)	401, 410, 422, 431, 461
HpyF3I	CTNAG	5 cut(s)	111, 270, 309, 399, 459
Hsp92II	CATG	1 cut(s)	13
Kzo9I	GATC	7 cut(s)	202, 208, 238, 331, 481, 561, 636
Lsp1109I	GCAGC	7 cut(s)	115, 289, 361, 379, 400, 421, 439
LweI	GCATC	3 cut(s)	45, 115, 307
MaeIII	GTNAC	2 cut(s)	655, 672
MalI	GATC	7 cut(s)	204, 210, 240, 333, 483, 563, 638
MboI	GATC	7 cut(s)	202, 208, 238, 331, 481, 561, 636
MboII	GAAGA	6 cut(s)	128, 131, 368, 518, 533, 598
MluCI	AATT	3 cut(s)	13, 322, 613
MnlI	CCTC	9 cut(s)	40, 106, 115, 165, 221, 265, 304, 394, 454
MslI	CAYNNNNRTG	1 cut(s)	552
MspI	CCGG	3 cut(s)	565, 625, 653
MvnI	CGCG	1 cut(s)	649
MwoI	GCNNNNNNNGC	5 cut(s)	401, 410, 422, 431, 461
NdeII	GATC	7 cut(s)	202, 208, 238, 331, 481, 561, 636
NlaIII	CATG	1 cut(s)	13
NmuCI	GTSAC	2 cut(s)	655, 672
PfeI	GAWTC	2 cut(s)	642, 663
PinAI	ACCGGT	1 cut(s)	652
PkrI	GCNGC	7 cut(s)	130, 304, 376, 394, 415, 436, 454
PspEI	GGTNACC	1 cut(s)	655
RsaI	GTAC	2 cut(s)	527, 607
RsaNI	GTAC	2 cut(s)	526, 606
RseI	CAYNNNNRTG	1 cut(s)	552
SatI	GCNGC	7 cut(s)	129, 303, 375, 393, 414, 435, 453
Sau3AI	GATC	7 cut(s)	202, 208, 238, 331, 481, 561, 636
SetI	ASST	9 cut(s)	158, 265, 304, 315, 376, 394, 415, 436, 454
SfaNI	GCATC	3 cut(s)	45, 115, 307
SmiMI	CAYNNNNRTG	1 cut(s)	552
Sse9I	AATT	3 cut(s)	13, 322, 613
SsiI	CCGC	2 cut(s)	131, 647
SspI	AATATT	2 cut(s)	349, 475
TaaI	ACNGT	1 cut(s)	634
TaqI	TCGA	3 cut(s)	201, 315, 575
TasI	AATT	3 cut(s)	13, 322, 613
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	2 cut(s)	642, 663
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	2 cut(s)	655, 672
TseI	GCWGC	7 cut(s)	128, 302, 374, 392, 413, 434, 452
Tsp45I	GTSAC	2 cut(s)	655, 672
TspDTI	ATGAA	9 cut(s)	17, 26, 201, 270, 384, 423, 444, 534, 593
TspGWI	ACGGA	1 cut(s)	494
TspRI	CASTG	1 cut(s)	169
XapI	RAATTY	3 cut(s)	13, 322, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.