Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

7681991 .. 7685574

Gene Structure 3584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12850.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCAGTTGTTACACGTGTATCCCACAGAACCCATTCCGGCATTAGTCCTACCTCCGGTTTGGCTCTGGCTTGCCATCTCTTGCTTCTGGTCTCTTCAGCCATTACTCCCTGTTTTGGGTTTTCTGGTGTTGGAGGAGAAGATGAGGGAAACAGAGGAGGGGAGTTGTGTCCTGAAATTTTGAGAGATGAAGCTGTGGCAAGACTTCATCAACTTGGAAAGGTAAGTGATGGTGATGGTTATCTTGAGAGGATATTCATGAGCCCAGCAGCTGTGAGGGCAGGAAATCTTATCCGCGAATGGATGGAGGATGCTGGTTTGCGAACGTGGGTTGATTGCTTGGGAAATGTACATGGTCGAGTTGAGGGAGGGAATGCTAGTGCTGAGGCTCTACTAATTGGTTCTCATTTGGATACTGTTGTTGATGCTGGGATATTTGATGGGTCTTTAGGTATCATTTCTGTGATATCTGCATTGAAGGTTTTGAGTATCAATGGAAAGGTGGGAGAACTAAAGCGGCCGGTTGAGGTAATAGCGTTTAGTGATGAAGAAGGAGTTAGGTTTCAGTCTACATTCATAGGAAGTGCTGCTATAGCTGGAATTTTATCAGCATCGGCACTGCAAATAACTGATAAAAGTGGTGTGACAATTCAAGATGCTCTTAAGAAAAACTCCATAGAAGTTACAGAGGATCACTTGCAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATGTTGAGATTCATATCGAACAAGGGCCTGTACTGGAGTGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACGATGAGAGGTTCCCAGGGGCATGCCGGAACAGTTCCAATGTCCATGCGTCATGACCCTATGGCTGCTGCTGCAGAAGCGATTGTATTATTAGAAAGTCTATGTAACATTCACGGTAGATATACGTGCAATCGACGATATGGGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

328

Amino Acids

34.79

Weight (kDa)

5.88

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	197 - 280	8.8e-08	Peptidase family M28
Peptidase_M20	PF01546	214 - 568	8e-14	Peptidase family M20/M25/M40
M20_dimer	PF07687	353 - 465	8.7e-08	Peptidase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	569
AccII	CGCG	1 cut(s)	297
AciI	CCGC	2 cut(s)	295, 517
AclWI	GGATC	1 cut(s)	699
AcoI	YGGCCR	1 cut(s)	518
AcsI	RAATTY	2 cut(s)	177, 600
AcuI	CTGAAG	1 cut(s)	81
AcvI	CACGTG	1 cut(s)	17
AfaI	GTAC	2 cut(s)	351, 768
AfiI	CCNNNNNNNGG	3 cut(s)	56, 116, 117
AflII	CTTAAG	1 cut(s)	662
AflIII	ACRYGT	2 cut(s)	14, 16
AgsI	TTSAA	2 cut(s)	478, 653
AhdI	GACNNNNNGTC	1 cut(s)	721
AjiI	CACGTC	1 cut(s)	981
AjnI	CCWGG	1 cut(s)	849
AluBI	AGCT	5 cut(s)	194, 272, 596, 706, 812
AluI	AGCT	5 cut(s)	194, 272, 596, 706, 812
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	699
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	518, 761
ApeKI	GCWGC	7 cut(s)	269, 587, 700, 703, 899, 902, 905
ApoI	RAATTY	2 cut(s)	177, 600
Asp700I	GAANNNNTTC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	761
AsuHPI	GGTGA	1 cut(s)	245
BaeI	ACNNNNGTAYC	3 cut(s)	36, 405, 438
BanII	GRGCYC	1 cut(s)	266
BbrPI	CACGTG	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	7 cut(s)	281, 574, 712, 715, 886, 889, 892
BccI	CCATC	5 cut(s)	84, 224, 230, 298, 434
BciT130I	CCWGG	1 cut(s)	851
BciVI	GTATCC	2 cut(s)	31, 406
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	378, 791
BfmI	CTRYAG	2 cut(s)	591, 906
BfrI	CTTAAG	1 cut(s)	662
BfuI	GTATCC	2 cut(s)	31, 406
BisI	GCNGC	8 cut(s)	270, 518, 588, 701, 704, 900, 903, 906
BlsI	GCNGC	8 cut(s)	271, 519, 589, 702, 705, 901, 904, 907
Bme1390I	CCNGG	1 cut(s)	851
BmeRI	GACNNNNNGTC	1 cut(s)	721
BmgBI	CACGTC	1 cut(s)	981
BmgT120I	GGNCC	1 cut(s)	761
BmiI	GGNNCC	1 cut(s)	847
BmrFI	CCNGG	1 cut(s)	851
BmsI	GCATC	4 cut(s)	301, 415, 620, 646
BpmI	CTGGAG	1 cut(s)	791
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	266
BsaAI	YACGTR	2 cut(s)	17, 960
BsaBI	GATNNNNATC	2 cut(s)	240, 749
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	849, 850
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 116, 117
Bse118I	RCCGGY	1 cut(s)	520
Bse1I	ACTGG	1 cut(s)	774
Bse8I	GATNNNNATC	2 cut(s)	240, 749
BseBI	CCWGG	1 cut(s)	851
BseDI	CCNNGG	2 cut(s)	849, 850
BseGI	GGATG	2 cut(s)	309, 316
BseJI	GATNNNNATC	2 cut(s)	240, 749
BseLI	CCNNNNNNNGG	3 cut(s)	56, 116, 117
BseMII	CTCAG	2 cut(s)	375, 721
BseNI	ACTGG	1 cut(s)	774
BseRI	GAGGAG	2 cut(s)	150, 171
BseX3I	CGGCCG	1 cut(s)	518
BseXI	GCAGC	7 cut(s)	281, 574, 712, 715, 886, 889, 892
BseYI	CCCAGC	2 cut(s)	265, 428
Bsh1236I	CGCG	1 cut(s)	297
Bsh1285I	CGRYCG	1 cut(s)	521
BshFI	GGCC	2 cut(s)	520, 763
BsiEI	CGRYCG	1 cut(s)	521
BsiSI	CCGG	4 cut(s)	39, 57, 521, 861
BslI	CCNNNNNNNGG	3 cut(s)	56, 116, 117
BsmAI	GTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	520, 763
Bso31I	GGTCTC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	691
BspACI	CCGC	2 cut(s)	295, 517
BspANI	GGCC	2 cut(s)	520, 763
BspCNI	CTCAG	2 cut(s)	376, 720
BspFNI	CGCG	1 cut(s)	297
BspHI	TCATGA	2 cut(s)	258, 886
BspLI	GGNNCC	1 cut(s)	847
BspMAI	CTGCAG	1 cut(s)	910
BspPI	GGATC	1 cut(s)	699
BspTI	CTTAAG	1 cut(s)	662
BspTNI	GGTCTC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	520
BsrGI	TGTACA	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	774
BssAI	RCCGGY	1 cut(s)	520
BssECI	CCNNGG	2 cut(s)	849, 850
BssMI	GATC	1 cut(s)	691
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	3 cut(s)	418, 868, 950
Bst6I	CTCTTC	1 cut(s)	100
BstAFI	CTTAAG	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	349
BstBAI	YACGTR	2 cut(s)	17, 960
BstC8I	GCNNGC	2 cut(s)	73, 858
BstDEI	CTNAG	2 cut(s)	384, 707
BstF5I	GGATG	2 cut(s)	309, 316
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	1 cut(s)	694
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	691
BstMCI	CGRYCG	1 cut(s)	521
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 593, 905, 911
BstNI	CCWGG	1 cut(s)	851
BstNSI	RCATGY	1 cut(s)	860
BstSCI	CCNGG	1 cut(s)	849
BstSFI	CTRYAG	2 cut(s)	591, 906
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	7 cut(s)	281, 574, 712, 715, 886, 889, 892
BstZI	CGGCCG	1 cut(s)	518
BsuI	GTATCC	2 cut(s)	31, 406
BsuRI	GGCC	2 cut(s)	520, 763
BtrI	CACGTC	1 cut(s)	981
BtsCI	GGATG	2 cut(s)	309, 316
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	1 cut(s)	617
Cac8I	GCNNGC	2 cut(s)	73, 858
CaiI	CAGNNNCTG	1 cut(s)	272
CciI	TCATGA	2 cut(s)	258, 886
Cfr10I	RCCGGY	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	761
CseI	GACGC	1 cut(s)	872
Csp6I	GTAC	2 cut(s)	350, 767
CviAII	CATG	5 cut(s)	259, 353, 857, 880, 887
CviQI	GTAC	2 cut(s)	350, 767
DdeI	CTNAG	2 cut(s)	384, 707
DpnI	GATC	1 cut(s)	693
DpnII	GATC	1 cut(s)	691
DriI	GACNNNNNGTC	1 cut(s)	721
EaeI	YGGCCR	1 cut(s)	518
EagI	CGGCCG	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	100
Eam1105I	GACNNNNNGTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	100
EclXI	CGGCCG	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	468
Eco52I	CGGCCG	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	81
Eco72I	CACGTG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRII	CCWGG	1 cut(s)	849
EcoRV	GATATC	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	266
FaeI	CATG	5 cut(s)	262, 356, 860, 883, 890
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FatI	CATG	5 cut(s)	258, 352, 856, 879, 886
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	8 cut(s)	270, 518, 588, 701, 704, 900, 903, 906
FokI	GGATG	2 cut(s)	316, 323
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	8 cut(s)	270, 518, 588, 701, 704, 900, 903, 906
FspBI	CTAG	2 cut(s)	378, 791
GluI	GCNGC	8 cut(s)	270, 518, 588, 701, 704, 900, 903, 906
GsaI	CCCAGC	2 cut(s)	269, 432
GsuI	CTGGAG	1 cut(s)	791
HaeIII	GGCC	2 cut(s)	520, 763
HapII	CCGG	4 cut(s)	39, 57, 521, 861
HgaI	GACGC	1 cut(s)	872
Hin1II	CATG	5 cut(s)	262, 356, 860, 883, 890
HinfI	GANTC	1 cut(s)	745
HpaII	CCGG	4 cut(s)	39, 57, 521, 861
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	1 cut(s)	710
Hpy188III	TCNNGA	5 cut(s)	173, 245, 259, 653, 887
Hpy8I	GTNNAC	1 cut(s)	570
Hpy99I	CGWCG	1 cut(s)	972
HpyAV	CCTTC	2 cut(s)	472, 545
HpyCH4III	ACNGT	3 cut(s)	418, 868, 950
HpyCH4IV	ACGT	4 cut(s)	16, 326, 959, 980
HpyCH4V	TGCA	5 cut(s)	473, 622, 700, 908, 963
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 593, 905, 911
HpyF3I	CTNAG	2 cut(s)	384, 707
HpySE526I	ACGT	4 cut(s)	16, 326, 959, 980
Hsp92II	CATG	5 cut(s)	262, 356, 860, 883, 890
Kzo9I	GATC	1 cut(s)	691
Lsp1109I	GCAGC	7 cut(s)	281, 574, 712, 715, 886, 889, 892
LweI	GCATC	4 cut(s)	301, 415, 620, 646
MaeI	CTAG	2 cut(s)	378, 791
MaeII	ACGT	4 cut(s)	16, 326, 959, 980
MaeIII	GTNAC	5 cut(s)	10, 643, 682, 832, 938
MalI	GATC	1 cut(s)	693
MboI	GATC	1 cut(s)	691
MboII	GAAGA	3 cut(s)	87, 152, 560
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	4 cut(s)	177, 396, 600, 648
MmeI	TCCRAC	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	2 cut(s)	663, 801
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	272
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	4 cut(s)	39, 57, 521, 861
MspR9I	CCNGG	1 cut(s)	851
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	851
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	278, 593, 905, 911
NdeII	GATC	1 cut(s)	691
NlaIII	CATG	5 cut(s)	262, 356, 860, 883, 890
NlaIV	GGNNCC	1 cut(s)	847
NmuCI	GTSAC	1 cut(s)	643
NspI	RCATGY	1 cut(s)	860
PaeI	GCATGC	1 cut(s)	860
PagI	TCATGA	2 cut(s)	258, 886
PasI	CCCWGGG	1 cut(s)	850
PctI	GAATGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	745
PkrI	GCNGC	8 cut(s)	271, 519, 589, 702, 705, 901, 904, 907
PmaCI	CACGTG	1 cut(s)	17
PmlI	CACGTG	1 cut(s)	17
Ppu21I	YACGTR	2 cut(s)	17, 960
Psp6I	CCWGG	1 cut(s)	849
PspCI	CACGTG	1 cut(s)	17
PspFI	CCCAGC	2 cut(s)	265, 428
PspGI	CCWGG	1 cut(s)	849
PspN4I	GGNNCC	1 cut(s)	847
PspPI	GGNCC	1 cut(s)	761
PstI	CTGCAG	1 cut(s)	910
PstNI	CAGNNNCTG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	351, 768
RsaNI	GTAC	2 cut(s)	350, 767
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	663, 801
SatI	GCNGC	8 cut(s)	270, 518, 588, 701, 704, 900, 903, 906
Sau3AI	GATC	1 cut(s)	691
Sau96I	GGNCC	1 cut(s)	761
ScrFI	CCNGG	1 cut(s)	851
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	4 cut(s)	301, 415, 620, 646
SfcI	CTRYAG	2 cut(s)	591, 906
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	2 cut(s)	245, 662
SmoI	CTYRAG	2 cut(s)	245, 662
SphI	GCATGC	1 cut(s)	860
Sse9I	AATT	4 cut(s)	177, 396, 600, 648
SsiI	CCGC	2 cut(s)	295, 517
SspMI	CTAG	2 cut(s)	378, 791
StyD4I	CCNGG	1 cut(s)	849
TaaI	ACNGT	3 cut(s)	418, 868, 950
TaiI	ACGT	4 cut(s)	19, 329, 962, 983
TaqI	TCGA	3 cut(s)	358, 753, 967
TasI	AATT	4 cut(s)	177, 396, 600, 648
TatI	WGTACW	2 cut(s)	349, 766
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	1 cut(s)	745
Tru1I	TTAA	2 cut(s)	663, 801
Tru9I	TTAA	2 cut(s)	663, 801
TscAI	CASTG	1 cut(s)	624
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	7 cut(s)	269, 587, 700, 703, 899, 902, 905
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	6 cut(s)	197, 204, 247, 561, 565, 737
TspRI	CASTG	1 cut(s)	624
Vha464I	CTTAAG	1 cut(s)	662
XapI	RAATTY	2 cut(s)	177, 600
XceI	RCATGY	1 cut(s)	860
XcmI	CCANNNNNNNNNTGG	1 cut(s)	726
XmiI	GTMKAC	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	2 cut(s)	378, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.