Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

15702175 .. 15704257

Gene Structure 2083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTGTGTAAGTGATGGTTATCTTGAGAGGATATTCATGAGCCCAGCAGCTGTGAGGGCTGGAAATCTTATCCGCGAATGGATGGAGGATGCTGGCATCATTTCTGTGGTATCTGCATTGAAGGTTTTGTGTATCAATGGAAAATTGGGAGAACTAAAGAGGCCGGTTGAGGTAATAGCATTTAGTGATGAAGAAGGAGTAAGGTTTCAGTCTACATTCATAGGAAGTGCAGCTGTAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGGTGTGACAATTCAAGATGCTGTTAAGAAAAAATCCATAGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGATTCAAAATCAGTTTGGATTCACGTTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTTGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACGATGAGAGGTTCCCAGGGGCCTGCTGGAACAGTTCCAATGTCCATGCGTCATGACCCTATGGCTGCTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGATGGTCAATGCAAAAGTTACTCATTAGACTTGGCCAAGTGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

214

Amino Acids

23.19

Weight (kDa)

6.43

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	212
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	73, 539
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	1 cut(s)	243
AfaI	GTAC	1 cut(s)	399
AgsI	TTSAA	4 cut(s)	121, 296, 363, 386
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	5 cut(s)	50, 233, 239, 349, 443
AluI	AGCT	5 cut(s)	50, 233, 239, 349, 443
Alw21I	GWGCWC	1 cut(s)	339
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	4 cut(s)	161, 392, 485, 630
ApeKI	GCWGC	7 cut(s)	47, 230, 343, 346, 530, 533, 536
ApoI	RAATTY	1 cut(s)	243
AspS9I	GGNCC	2 cut(s)	392, 485
BalI	TGGCCA	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	7 cut(s)	59, 242, 355, 358, 517, 520, 523
BccI	CCATC	3 cut(s)	8, 76, 593
BciT130I	CCWGG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	7 cut(s)	48, 231, 344, 347, 531, 534, 537
BlsI	GCNGC	7 cut(s)	49, 232, 345, 348, 532, 535, 538
Bme1390I	CCNGG	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	392, 485
BmiI	GGNNCC	2 cut(s)	478, 486
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	4 cut(s)	79, 105, 289, 583
BpuEI	CTTGAG	2 cut(s)	44, 564
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	480, 481
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	251, 405
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	2 cut(s)	480, 481
BseGI	GGATG	3 cut(s)	87, 94, 574
BseJI	GATNNNNATC	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	364
BseNI	ACTGG	2 cut(s)	251, 405
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	7 cut(s)	59, 242, 355, 358, 517, 520, 523
BseYI	CCCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	4 cut(s)	163, 394, 487, 632
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	1 cut(s)	164
BsnI	GGCC	4 cut(s)	163, 394, 487, 632
Bsp1286I	GDGCHC	2 cut(s)	44, 339
BspACI	CCGC	2 cut(s)	73, 539
BspANI	GGCC	4 cut(s)	163, 394, 487, 632
BspCNI	CTCAG	1 cut(s)	363
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	2 cut(s)	36, 517
BspLI	GGNNCC	2 cut(s)	478, 486
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	251, 405
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	480, 481
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	499
BstC8I	GCNNGC	2 cut(s)	94, 489
BstDEI	CTNAG	1 cut(s)	350
BstF5I	GGATG	3 cut(s)	87, 94, 574
BstFNI	CGCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 236, 343, 536, 542
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	7 cut(s)	59, 242, 355, 358, 517, 520, 523
BsuRI	GGCC	4 cut(s)	163, 394, 487, 632
BtsCI	GGATG	3 cut(s)	87, 94, 574
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	2 cut(s)	94, 489
CaiI	CAGNNNCTG	1 cut(s)	50
CciI	TCATGA	2 cut(s)	36, 517
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	392, 485
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	3 cut(s)	37, 511, 518
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	44
EcoO109I	RGGNCCY	2 cut(s)	392, 485
EcoRII	CCWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	3 cut(s)	40, 514, 521
FaiI	YATR	9 cut(s)	38, 221, 320, 357, 440, 512, 519, 527, 568
FatI	CATG	3 cut(s)	36, 510, 517
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	7 cut(s)	48, 231, 344, 347, 531, 534, 537
FokI	GGATG	3 cut(s)	94, 101, 561
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	7 cut(s)	48, 231, 344, 347, 531, 534, 537
GluI	GCNGC	7 cut(s)	48, 231, 344, 347, 531, 534, 537
GsaI	CCCAGC	1 cut(s)	47
HaeIII	GGCC	4 cut(s)	163, 394, 487, 632
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	503
Hin1II	CATG	3 cut(s)	40, 514, 521
HinfI	GANTC	2 cut(s)	359, 376
HpaII	CCGG	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	353
Hpy188III	TCNNGA	5 cut(s)	23, 37, 296, 518, 581
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	2 cut(s)	115, 188
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	6 cut(s)	116, 230, 265, 343, 609, 639
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 236, 343, 536, 542
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	3 cut(s)	40, 514, 521
LmnI	GCTCC	1 cut(s)	334
Lsp1109I	GCAGC	7 cut(s)	59, 242, 355, 358, 517, 520, 523
LweI	GCATC	4 cut(s)	79, 105, 289, 583
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	4 cut(s)	286, 325, 463, 614
MboII	GAAGA	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	44, 339
MlsI	TGGCCA	1 cut(s)	632
MluCI	AATT	3 cut(s)	143, 243, 291
MluNI	TGGCCA	1 cut(s)	632
MnlI	CCTC	9 cut(s)	21, 48, 79, 153, 163, 325, 429, 467, 588
Mox20I	TGGCCA	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	632
MseI	TTAA	2 cut(s)	306, 432
MslI	CAYNNNNRTG	1 cut(s)	104
Msp20I	TGGCCA	1 cut(s)	632
MspA1I	CMGCKG	2 cut(s)	50, 233
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	482
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	5 cut(s)	56, 236, 343, 536, 542
NlaIII	CATG	3 cut(s)	40, 514, 521
NlaIV	GGNNCC	2 cut(s)	478, 486
NmuCI	GTSAC	1 cut(s)	286
PagI	TCATGA	2 cut(s)	36, 517
PasI	CCCWGGG	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	359, 376
PkrI	GCNGC	7 cut(s)	49, 232, 345, 348, 532, 535, 538
Psp6I	CCWGG	1 cut(s)	480
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	2 cut(s)	478, 486
PspPI	GGNCC	2 cut(s)	392, 485
PstNI	CAGNNNCTG	1 cut(s)	50
PvuII	CAGCTG	2 cut(s)	50, 233
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	306, 432
SatI	GCNGC	7 cut(s)	48, 231, 344, 347, 531, 534, 537
Sau96I	GGNCC	2 cut(s)	392, 485
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	2 cut(s)	44, 339
SfaNI	GCATC	4 cut(s)	79, 105, 289, 583
SfcI	CTRYAG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	23, 579
SmoI	CTYRAG	2 cut(s)	23, 579
Sse9I	AATT	3 cut(s)	143, 243, 291
SsiI	CCGC	2 cut(s)	73, 539
StyD4I	CCNGG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	1 cut(s)	384
TasI	AATT	3 cut(s)	143, 243, 291
TatI	WGTACW	1 cut(s)	397
TfiI	GAWTC	2 cut(s)	359, 376
Tru1I	TTAA	2 cut(s)	306, 432
Tru9I	TTAA	2 cut(s)	306, 432
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	7 cut(s)	47, 230, 343, 346, 530, 533, 536
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	3 cut(s)	25, 204, 208
TspRI	CASTG	1 cut(s)	267
XapI	RAATTY	1 cut(s)	243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.