Rw1G000870

Allantoate

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
1216678 .. 1217988
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G000870.1

Sequence Viewer

Length: 726 bp
ATGTTGATAACCTGTATTAGAATATTCTCTGTGGAAACAGCAATAAAATGGATGCATGTTATAGGTTCTTCTAGTGCTCTGACTGCAAACTCTGTTGATTGTTTCATGTTGTACATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACAATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCGAACGTCCATGCGTCATGACCCTATGGCTGCTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCCGTCTTTTGATGGTCAGTGCAAAAGTTACTCATTAGAATCACTTTCAACTTACTCGTTTGTACCGTTGGTGAGATATCGACTTGGCCAAGTGCAGGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGACGTGAAACTGTTGTATGTGAATTATCTAACCGATTGTATCAAATATGTGATAGGCGTTCAGTTTCGTGCACAATTGATCGTAAGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGACTTCGAAGCTGAAGTCAGCAGCTTATCTTGGGCTCAAGAGAAGGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGTAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACTAATGTTTGTTATCTTTAA

Protein Analysis

241

Amino Acids

26.56

Weight (kDa)

7.59

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20070 AT4G20070
fragaria_vesca FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica MD10G1228200.v1.1
prunus_persica Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis pycom10g19170
rosa_chinensis RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 412
AciI CCGC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 412
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 4 cut(s) 113, 138, 390, 654
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 2 cut(s) 125, 375
AjiI CACGTC 1 cut(s) 467
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 4 cut(s) 182, 583, 595, 608
AluI AGCT 4 cut(s) 182, 583, 595, 608
Alw21I GWGCWC 2 cut(s) 79, 536
Alw26I GTCTC 1 cut(s) 702
Alw44I GTGCAC 1 cut(s) 532
AlwNI CAGNNNCTG 1 cut(s) 638
AoxI GGCC 2 cut(s) 131, 412
ApaLI GTGCAC 1 cut(s) 532
ApeKI GCWGC 4 cut(s) 269, 272, 275, 605
ArsI GACNNNNNNTTYG 2 cut(s) 584, 616
AseI ATTAAT 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 409
AsuII TTCGAA 2 cut(s) 241, 590
BaeGI GKGCMC 1 cut(s) 536
BalI TGGCCA 1 cut(s) 414
BanII GRGCYC 1 cut(s) 621
Bbv12I GWGCWC 2 cut(s) 79, 536
BbvI GCAGC 4 cut(s) 256, 259, 262, 617
BccI CCATC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 702
BfaI CTAG 2 cut(s) 72, 161
BfuAI ACCTGC 1 cut(s) 412
BisI GCNGC 4 cut(s) 270, 273, 276, 606
BlsI GCNGC 4 cut(s) 271, 274, 277, 607
Bme1390I CCNGG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 4 cut(s) 42, 322, 544, 673
Bpu14I TTCGAA 2 cut(s) 241, 590
BpuEI CTTGAG 2 cut(s) 303, 605
BsaAI YACGTR 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 219, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 693
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 219, 220
BseGI GGATG 3 cut(s) 57, 313, 652
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 536
BseXI GCAGC 4 cut(s) 256, 259, 262, 617
BsgI GTGCAG 1 cut(s) 440
BshFI GGCC 2 cut(s) 133, 414
BsiHKAI GWGCWC 2 cut(s) 79, 536
BslFI GGGAC 1 cut(s) 477
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 702
BsmFI GGGAC 1 cut(s) 477
BsnI GGCC 2 cut(s) 133, 414
Bsp119I TTCGAA 2 cut(s) 241, 590
Bsp1286I GDGCHC 3 cut(s) 79, 536, 621
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 1 cut(s) 541
BspACI CCGC 1 cut(s) 278
BspANI GGCC 2 cut(s) 133, 414
BspCNI CTCAG 1 cut(s) 571
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 412
BspT104I TTCGAA 2 cut(s) 241, 590
BsrDI GCAATG 1 cut(s) 693
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 219, 220
BssMI GATC 1 cut(s) 541
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 4 cut(s) 238, 393, 436, 475
BstAUI TGTACA 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 446
BstBI TTCGAA 2 cut(s) 241, 590
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 579
BstF5I GGATG 3 cut(s) 57, 313, 652
BstKTI GATC 1 cut(s) 544
BstMAI GTCTC 1 cut(s) 702
BstMBI GATC 1 cut(s) 541
BstMWI GCNNNNNNNGC 3 cut(s) 83, 275, 281
BstNI CCWGG 1 cut(s) 221
BstNSI RCATGY 2 cut(s) 59, 230
BstSCI CCNGG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 536
BstV1I GCAGC 4 cut(s) 256, 259, 262, 617
BsuRI GGCC 2 cut(s) 133, 414
BtrI CACGTC 1 cut(s) 467
BtsCI GGATG 3 cut(s) 57, 313, 652
BtsIMutI CAGTG 1 cut(s) 350
BveI ACCTGC 1 cut(s) 412
Cac8I GCNNGC 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 638
CciI TCATGA 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 131
CseI GACGC 1 cut(s) 242
Csp6I GTAC 4 cut(s) 112, 137, 389, 653
CviAII CATG 8 cut(s) 56, 106, 227, 250, 257, 460, 551, 680
CviQI GTAC 4 cut(s) 112, 137, 389, 653
DdeI CTNAG 1 cut(s) 579
DpnI GATC 1 cut(s) 543
DpnII GATC 1 cut(s) 541
EaeI YGGCCR 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 621
Eco32I GATATC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 219
EcoRV GATATC 1 cut(s) 404
EcoT22I ATGCAT 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 621
FaeI CATG 8 cut(s) 59, 109, 230, 253, 260, 463, 554, 683
FaqI GGGAC 1 cut(s) 477
FatI CATG 8 cut(s) 55, 105, 226, 249, 256, 459, 550, 679
Fnu4HI GCNGC 4 cut(s) 270, 273, 276, 606
FokI GGATG 3 cut(s) 64, 300, 659
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 4 cut(s) 270, 273, 276, 606
FspBI CTAG 2 cut(s) 72, 161
GluI GCNGC 4 cut(s) 270, 273, 276, 606
HaeIII GGCC 2 cut(s) 133, 414
HgaI GACGC 1 cut(s) 242
Hin1II CATG 8 cut(s) 59, 109, 230, 253, 260, 463, 554, 683
HinfI GANTC 2 cut(s) 365, 575
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 1 cut(s) 534
Hpy188I TCNGA 2 cut(s) 81, 580
Hpy188III TCNNGA 4 cut(s) 257, 320, 622, 644
Hpy8I GTNNAC 1 cut(s) 534
HpyAV CCTTC 1 cut(s) 621
HpyCH4III ACNGT 4 cut(s) 238, 393, 436, 475
HpyCH4IV ACGT 3 cut(s) 245, 445, 466
HpyCH4V TGCA 9 cut(s) 55, 86, 348, 421, 449, 534, 557, 563, 686
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 275, 281
HpyF3I CTNAG 1 cut(s) 579
HpySE526I ACGT 3 cut(s) 245, 445, 466
Hsp92II CATG 8 cut(s) 59, 109, 230, 253, 260, 463, 554, 683
Kzo9I GATC 1 cut(s) 541
Lsp1109I GCAGC 4 cut(s) 256, 259, 262, 617
LweI GCATC 4 cut(s) 42, 322, 544, 673
MaeI CTAG 2 cut(s) 72, 161
MaeII ACGT 3 cut(s) 245, 445, 466
MaeIII GTNAC 3 cut(s) 202, 353, 424
MalI GATC 1 cut(s) 543
MboI GATC 1 cut(s) 541
MboII GAAGA 1 cut(s) 60
MfeI CAATTG 2 cut(s) 450, 537
MhlI GDGCHC 3 cut(s) 79, 536, 621
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 3 cut(s) 450, 485, 537
MluNI TGGCCA 1 cut(s) 414
MnlI CCTC 3 cut(s) 168, 206, 327
Mox20I TGGCCA 1 cut(s) 414
Mph1103I ATGCAT 1 cut(s) 57
MscI TGGCCA 1 cut(s) 414
MseI TTAA 4 cut(s) 171, 662, 704, 724
Msp20I TGGCCA 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 221
MunI CAATTG 2 cut(s) 450, 537
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 83, 275, 281
NdeII GATC 1 cut(s) 541
NlaIII CATG 8 cut(s) 59, 109, 230, 253, 260, 463, 554, 683
NlaIV GGNNCC 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 57
NspI RCATGY 2 cut(s) 59, 230
NspV TTCGAA 2 cut(s) 241, 590
PaeI GCATGC 1 cut(s) 230
PagI TCATGA 1 cut(s) 256
PasI CCCWGGG 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 389
PfeI GAWTC 2 cut(s) 365, 575
PkrI GCNGC 4 cut(s) 271, 274, 277, 607
Ppu21I YACGTR 1 cut(s) 446
PshBI ATTAAT 1 cut(s) 662
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 131
PstNI CAGNNNCTG 1 cut(s) 638
RsaI GTAC 4 cut(s) 113, 138, 390, 654
RsaNI GTAC 4 cut(s) 112, 137, 389, 653
SaqAI TTAA 4 cut(s) 171, 662, 704, 724
SatI GCNGC 4 cut(s) 270, 273, 276, 606
Sau3AI GATC 1 cut(s) 541
Sau96I GGNCC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 3 cut(s) 79, 536, 621
SfaNI GCATC 4 cut(s) 42, 322, 544, 673
SfuI TTCGAA 2 cut(s) 241, 590
SmlI CTYRAG 2 cut(s) 318, 620
SmoI CTYRAG 2 cut(s) 318, 620
SphI GCATGC 1 cut(s) 230
Sse9I AATT 3 cut(s) 450, 485, 537
SsiI CCGC 1 cut(s) 278
SspI AATATT 1 cut(s) 24
SspMI CTAG 2 cut(s) 72, 161
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 4 cut(s) 238, 393, 436, 475
TaiI ACGT 3 cut(s) 248, 448, 469
TaqI TCGA 3 cut(s) 241, 406, 590
TasI AATT 3 cut(s) 450, 485, 537
TatI WGTACW 2 cut(s) 111, 136
TfiI GAWTC 2 cut(s) 365, 575
Tru1I TTAA 4 cut(s) 171, 662, 704, 724
Tru9I TTAA 4 cut(s) 171, 662, 704, 724
TscAI CASTG 1 cut(s) 350
TseI GCWGC 4 cut(s) 269, 272, 275, 605
TspDTI ATGAA 2 cut(s) 94, 663
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 1 cut(s) 350
VneI GTGCAC 1 cut(s) 532
VspI ATTAAT 1 cut(s) 662
XceI RCATGY 2 cut(s) 59, 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XspI CTAG 2 cut(s) 72, 161
Zsp2I ATGCAT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.