Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

948223 .. 949089

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0004300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTTGAGTTATTCATGATGATGATCATCAGCTTCAGCAATCGAACAATGGAGATGGGTACAATAATCACAATCTTTACAGTAGTAGAGCCAGCAACCTTGAGAGATAGAGCCTTTACACAAGTCACATATCGTCGTCATCTTTTGTTGTACGTTATGAGAATTTGGCACGGAAAAGAGGAGAGTAAGCGGGTGTTGATGATGTTGACGGCGGCTTGGAGTTTGAGGCAAAGTAGCGCATTGAACATGGAGATTGAACTTGCATTTGGGGCACTGAAAGCTGAAACAAGTGCCGGATTCACCGCAGGCATTACATGTGAACTCACCGCTGTTGTTTTCGTTGTCGTTTTGATAGGGAGGAAGGGAGAGAAGAAGAGGGTGTTTGGGGTGAGAGTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

133

Amino Acids

15.14

Weight (kDa)

10.0

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	190, 212, 303, 327
AcsI	RAATTY	1 cut(s)	162
AcuI	CTGAAG	1 cut(s)	19
AfaI	GTAC	2 cut(s)	61, 152
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	244, 257
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	2 cut(s)	33, 281
AluI	AGCT	2 cut(s)	33, 281
ApoI	RAATTY	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	292, 316, 400
BaeGI	GKGCMC	1 cut(s)	274
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	24
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	121
BsaBI	GATNNNNATC	2 cut(s)	23, 26
Bse8I	GATNNNNATC	2 cut(s)	23, 26
BseJI	GATNNNNATC	2 cut(s)	23, 26
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	4 cut(s)	190, 212, 303, 327
BspHI	TCATGA	1 cut(s)	15
BssMI	GATC	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	93, 307
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 278
BstNSI	RCATGY	1 cut(s)	318
BstSLI	GKGCMC	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	2 cut(s)	93, 307
CciI	TCATGA	1 cut(s)	15
CfoI	GCGC	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	60, 151
CviAII	CATG	3 cut(s)	16, 247, 315
CviJI	RGCY	5 cut(s)	33, 91, 113, 215, 281
CviKI_1	RGCY	5 cut(s)	33, 91, 113, 215, 281
CviQI	GTAC	2 cut(s)	60, 151
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	19
FaeI	CATG	3 cut(s)	19, 250, 318
FaiI	YATR	5 cut(s)	17, 130, 158, 248, 316
FatI	CATG	3 cut(s)	15, 246, 314
FauI	CCCGC	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	213
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	1 cut(s)	213
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	19, 250, 318
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	1 cut(s)	297
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	3 cut(s)	292, 316, 400
Hpy166II	GTNNAC	2 cut(s)	207, 320
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	2 cut(s)	207, 320
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 278
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	19, 250, 318
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	24
LpnPI	CCDG	3 cut(s)	105, 291, 307
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	382, 385
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	1 cut(s)	162
MnlI	CCTC	4 cut(s)	172, 219, 351, 369
MslI	CAYNNNNRTG	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	269, 278
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	3 cut(s)	19, 250, 318
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	318
PagI	TCATGA	1 cut(s)	15
PciI	ACATGT	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	297
PkrI	GCNGC	1 cut(s)	214
PscI	ACATGT	1 cut(s)	314
RsaI	GTAC	2 cut(s)	61, 152
RsaNI	GTAC	2 cut(s)	60, 151
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	4 cut(s)	35, 101, 156, 283
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	4 cut(s)	190, 212, 303, 327
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	43
TasI	AATT	1 cut(s)	162
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	297
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	4
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	279
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.