Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004180.1

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Reverse (-)

112662 .. 115209

Gene Structure 2548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004180.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgtccttgttcagtggtgtgacaattcaagatgctcttaagaaaaactccattgaagttacagaggagcacttgcagcagctcaaatatgacccaaagtcagtttggggctatgttaagattcacattgaacaagggcctgtactggaatgggttggttttcctctaggagttgttaaaggcatagctggacagacaagactaaaggttacaatgagaggttcccaggggcatgctggaacagttccaatgtccatgagtcatgaccctatggctgctgctgcagaagccattatattgttagaaagcctaagtaagcatcctcaagattttctgtcttttgatggtcaatgcaaaagttactcattagaatcactttcaacttactcgtttgtaccgttggtaacattcacagtagatttacgtgcaattgatgacatgggacgtgaagctgttcatgatgcaaatgcagtcatttgcgattctgagctgacttcgaagctgaagtcagcagcttatcttgggctcaagagaatgacaggttctgttcaggatgaagtacctgtattaatgagtggagcaggacatgatgcaatggctctgtctcatttaactaaggaggcatacgtcacttccctgaagaacatgtattggatgatgatgtttgggcatctggtttggcaatcctggcattcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

232

Amino Acids

25.58

Weight (kDa)

6.04

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	524, 659
AfaI	GTAC	3 cut(s)	144, 396, 561
AflII	CTTAAG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	4 cut(s)	29, 56, 131, 381
AhdI	GACNNNNNGTC	1 cut(s)	97
AjiI	CACGTC	1 cut(s)	446
AjnI	CCWGG	2 cut(s)	225, 686
AluBI	AGCT	6 cut(s)	82, 188, 452, 490, 502, 515
AluI	AGCT	6 cut(s)	82, 188, 452, 490, 502, 515
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	609
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	6 cut(s)	76, 79, 275, 278, 281, 512
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
AseI	ATTAAT	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	137
AsuII	TTCGAA	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	6 cut(s)	88, 91, 262, 265, 268, 524
BccI	CCATC	1 cut(s)	338
BciT130I	CCWGG	2 cut(s)	227, 688
BcoDI	GTCTC	1 cut(s)	609
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	282
BfrI	CTTAAG	1 cut(s)	38
BisI	GCNGC	6 cut(s)	77, 80, 276, 279, 282, 513
BlsI	GCNGC	6 cut(s)	78, 81, 277, 280, 283, 514
Bme1390I	CCNGG	2 cut(s)	227, 688
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	2 cut(s)	227, 688
BmsI	GCATC	5 cut(s)	22, 328, 451, 580, 679
Bpu14I	TTCGAA	1 cut(s)	497
BpuEI	CTTGAG	2 cut(s)	309, 512
BsaAI	YACGTR	1 cut(s)	425
BsaJI	CCNNGG	2 cut(s)	225, 226
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	2 cut(s)	227, 688
BseDI	CCNNGG	2 cut(s)	225, 226
BseGI	GGATG	3 cut(s)	319, 559, 660
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	6 cut(s)	88, 91, 262, 265, 268, 524
BshFI	GGCC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	456
BsmAI	GTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	1 cut(s)	139
Bsp119I	TTCGAA	1 cut(s)	497
Bsp1286I	GDGCHC	2 cut(s)	72, 528
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	478
BspHI	TCATGA	2 cut(s)	262, 457
BspLI	GGNNCC	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	286
BspT104I	TTCGAA	1 cut(s)	497
BspTI	CTTAAG	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	225, 226
Bst2UI	CCWGG	2 cut(s)	227, 688
Bst4CI	ACNGT	3 cut(s)	244, 399, 415
BstAFI	CTTAAG	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	425
BstBI	TTCGAA	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	311, 486, 615
BstF5I	GGATG	3 cut(s)	319, 559, 660
BstMAI	GTCTC	1 cut(s)	609
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 281, 287, 688
BstNI	CCWGG	2 cut(s)	227, 688
BstNSI	RCATGY	2 cut(s)	236, 649
BstSCI	CCNGG	2 cut(s)	225, 686
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	6 cut(s)	88, 91, 262, 265, 268, 524
BsuRI	GGCC	1 cut(s)	139
BtrI	CACGTC	1 cut(s)	446
BtsCI	GGATG	3 cut(s)	319, 559, 660
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	545
CciI	TCATGA	2 cut(s)	262, 457
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	3 cut(s)	143, 395, 560
CviAII	CATG	7 cut(s)	233, 256, 263, 439, 458, 587, 646
CviQI	GTAC	3 cut(s)	143, 395, 560
DdeI	CTNAG	3 cut(s)	311, 486, 615
DriI	GACNNNNNGTC	1 cut(s)	97
Eam1105I	GACNNNNNGTC	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	528
Eco57I	CTGAAG	2 cut(s)	524, 659
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	225, 686
EcoT38I	GRGCYC	1 cut(s)	528
FaeI	CATG	7 cut(s)	236, 259, 266, 442, 461, 590, 649
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	7 cut(s)	232, 255, 262, 438, 457, 586, 645
Fnu4HI	GCNGC	6 cut(s)	77, 80, 276, 279, 282, 513
FokI	GGATG	3 cut(s)	306, 566, 667
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	6 cut(s)	77, 80, 276, 279, 282, 513
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	6 cut(s)	77, 80, 276, 279, 282, 513
HaeIII	GGCC	1 cut(s)	139
Hin1II	CATG	7 cut(s)	236, 259, 266, 442, 461, 590, 649
HinfI	GANTC	4 cut(s)	121, 259, 371, 482
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	6 cut(s)	29, 263, 326, 458, 529, 551
HpyCH4III	ACNGT	3 cut(s)	244, 399, 415
HpyCH4IV	ACGT	3 cut(s)	424, 445, 627
HpyCH4V	TGCA	7 cut(s)	76, 284, 354, 428, 464, 470, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 281, 287, 688
HpyF3I	CTNAG	3 cut(s)	311, 486, 615
HpySE526I	ACGT	3 cut(s)	424, 445, 627
Hsp92II	CATG	7 cut(s)	236, 259, 266, 442, 461, 590, 649
LmnI	GCTCC	2 cut(s)	67, 578
Lsp1109I	GCAGC	6 cut(s)	88, 91, 262, 265, 268, 524
LweI	GCATC	5 cut(s)	22, 328, 451, 580, 679
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	3 cut(s)	424, 445, 627
MaeIII	GTNAC	6 cut(s)	19, 58, 208, 359, 403, 628
MboII	GAAGA	1 cut(s)	652
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	2 cut(s)	72, 528
MluCI	AATT	2 cut(s)	24, 429
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	5 cut(s)	58, 174, 212, 333, 613
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	5 cut(s)	39, 117, 177, 569, 611
MspCI	CTTAAG	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	227, 688
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	2 cut(s)	227, 688
MwoI	GCNNNNNNNGC	4 cut(s)	76, 281, 287, 688
NlaIII	CATG	7 cut(s)	236, 259, 266, 442, 461, 590, 649
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	2 cut(s)	19, 628
NspI	RCATGY	2 cut(s)	236, 649
NspV	TTCGAA	1 cut(s)	497
PaeI	GCATGC	1 cut(s)	236
PagI	TCATGA	2 cut(s)	262, 457
PasI	CCCWGGG	1 cut(s)	226
PciI	ACATGT	1 cut(s)	645
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	121, 371, 482
PkrI	GCNGC	6 cut(s)	78, 81, 277, 280, 283, 514
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
Ppu21I	YACGTR	1 cut(s)	425
PscI	ACATGT	1 cut(s)	645
PshBI	ATTAAT	1 cut(s)	569
Psp6I	CCWGG	2 cut(s)	225, 686
PspGI	CCWGG	2 cut(s)	225, 686
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	545
RsaI	GTAC	3 cut(s)	144, 396, 561
RsaNI	GTAC	3 cut(s)	143, 395, 560
SaqAI	TTAA	5 cut(s)	39, 117, 177, 569, 611
SatI	GCNGC	6 cut(s)	77, 80, 276, 279, 282, 513
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	227, 688
SduI	GDGCHC	2 cut(s)	72, 528
SfaNI	GCATC	5 cut(s)	22, 328, 451, 580, 679
SfcI	CTRYAG	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	497
SmlI	CTYRAG	3 cut(s)	38, 324, 527
SmoI	CTYRAG	3 cut(s)	38, 324, 527
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	2 cut(s)	24, 429
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	225, 686
TaaI	ACNGT	3 cut(s)	244, 399, 415
TaiI	ACGT	3 cut(s)	427, 448, 630
TaqI	TCGA	1 cut(s)	497
TasI	AATT	2 cut(s)	24, 429
TatI	WGTACW	1 cut(s)	142
TfiI	GAWTC	3 cut(s)	121, 371, 482
Tru1I	TTAA	5 cut(s)	39, 117, 177, 569, 611
Tru9I	TTAA	5 cut(s)	39, 117, 177, 569, 611
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	2 cut(s)	19, 628
TseI	GCWGC	6 cut(s)	76, 79, 275, 278, 281, 512
Tsp45I	GTSAC	2 cut(s)	19, 628
TspDTI	ATGAA	3 cut(s)	446, 570, 684
TspRI	CASTG	1 cut(s)	19
Vha464I	CTTAAG	1 cut(s)	38
VspI	ATTAAT	1 cut(s)	569
XceI	RCATGY	2 cut(s)	236, 649
XcmI	CCANNNNNNNNNTGG	2 cut(s)	102, 233
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.