Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

2493560 .. 2496313

Gene Structure 2754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54590

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCAGAAATTACTGTTTGGTGGCTCTGCTAGAATTCTAACTACTAATATCATGTTGCTTTTGCTCAACATCTGTAGTGGTGTGACAATTCAAGATGCTCTTAAGAAAAACTCCATTGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATATTAAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAATACTAAAGGTTACAATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGAGTCATGACCCTATGGCTGCTGCTGCGGAAGCCATTATATTGTTAGAAAGCCTAAGTAAGCATCCTCAAGATTTTCTGTCTTTTGATGGTGAATGCAAAAGTTACTCATTAGAATCACTTTCAACTTACTCGTTTGTACCGTTGGTGAGATATCGACTTGGCCAAGTGCAAGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGACGTGAAGCTGTTGTATGTGAATTATCTATCCGATTGTATCAAATATGTGATAGGCGTTCAGTTTCGTGCCCAATTGATCGTAAGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGACTTCGAAGCTGAAGTCAGCAGCTTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACTAAGGTGGGTATGCTTTTTGTCCGCTGTCGAGGAGGCATACGTCACTTCCCTGAAGAACATGTATTGGATGATGATGTTTGGGCATTTGGTTTGGCAATCCTGGCATTCATAGAGACTCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

300

Amino Acids

33.11

Weight (kDa)

6.2

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	347, 799
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	1 cut(s)	33
AcuI	CTGAAG	2 cut(s)	686, 849
AfaI	GTAC	3 cut(s)	207, 459, 723
AflII	CTTAAG	1 cut(s)	101
AflIII	ACRYGT	1 cut(s)	835
AgsI	TTSAA	4 cut(s)	92, 119, 194, 444
AhdI	GACNNNNNGTC	1 cut(s)	160
AjiI	CACGTC	1 cut(s)	536
AjnI	CCWGG	2 cut(s)	288, 876
AluBI	AGCT	7 cut(s)	145, 251, 542, 652, 664, 677, 898
AluI	AGCT	7 cut(s)	145, 251, 542, 652, 664, 677, 898
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	771, 884
AlwNI	CAGNNNCTG	1 cut(s)	707
AoxI	GGCC	2 cut(s)	200, 481
ApeKI	GCWGC	6 cut(s)	139, 142, 338, 341, 344, 674
ApoI	RAATTY	1 cut(s)	33
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AseI	ATTAAT	1 cut(s)	731
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	422, 478
AsuII	TTCGAA	1 cut(s)	659
BaeGI	GKGCMC	1 cut(s)	605
BalI	TGGCCA	1 cut(s)	483
BanII	GRGCYC	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	6 cut(s)	151, 154, 325, 328, 331, 686
BccI	CCATC	1 cut(s)	401
BciT130I	CCWGG	2 cut(s)	290, 878
BcoDI	GTCTC	2 cut(s)	771, 884
BfaI	CTAG	3 cut(s)	30, 230, 901
BfmI	CTRYAG	1 cut(s)	73
BfrI	CTTAAG	1 cut(s)	101
BisI	GCNGC	6 cut(s)	140, 143, 339, 342, 345, 675
BlsI	GCNGC	6 cut(s)	141, 144, 340, 343, 346, 676
Bme1390I	CCNGG	2 cut(s)	290, 878
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmgBI	CACGTC	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	290, 878
BmsI	GCATC	4 cut(s)	85, 391, 613, 742
Bpu14I	TTCGAA	1 cut(s)	659
BpuEI	CTTGAG	2 cut(s)	372, 674
BsaAI	YACGTR	1 cut(s)	515
BsaJI	CCNNGG	2 cut(s)	288, 289
Bse1I	ACTGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	762
BseBI	CCWGG	2 cut(s)	290, 878
BseDI	CCNNGG	2 cut(s)	288, 289
BseGI	GGATG	3 cut(s)	382, 721, 850
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	2 cut(s)	160, 639
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	2 cut(s)	143, 822
BseSI	GKGCMC	1 cut(s)	605
BseXI	GCAGC	6 cut(s)	151, 154, 325, 328, 331, 686
BshFI	GGCC	2 cut(s)	202, 483
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	546
BsmAI	GTCTC	2 cut(s)	771, 884
BsmFI	GGGAC	1 cut(s)	546
BsmI	GAATGC	2 cut(s)	419, 881
BsnI	GGCC	2 cut(s)	202, 483
Bsp119I	TTCGAA	1 cut(s)	659
Bsp1286I	GDGCHC	3 cut(s)	135, 605, 690
Bsp143I	GATC	1 cut(s)	610
BspACI	CCGC	2 cut(s)	347, 799
BspANI	GGCC	2 cut(s)	202, 483
BspCNI	CTCAG	2 cut(s)	159, 640
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	286
BspT104I	TTCGAA	1 cut(s)	659
BspTI	CTTAAG	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	762
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	288, 289
BssMI	GATC	1 cut(s)	610
Bst2UI	CCWGG	2 cut(s)	290, 878
Bst4CI	ACNGT	4 cut(s)	15, 307, 462, 505
BstAFI	CTTAAG	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	515
BstBI	TTCGAA	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	5 cut(s)	146, 374, 648, 777, 894
BstF5I	GGATG	3 cut(s)	382, 721, 850
BstKTI	GATC	1 cut(s)	613
BstMAI	GTCTC	2 cut(s)	771, 884
BstMBI	GATC	1 cut(s)	610
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 344, 350, 878
BstNI	CCWGG	2 cut(s)	290, 878
BstNSI	RCATGY	2 cut(s)	299, 839
BstSCI	CCNGG	2 cut(s)	288, 876
BstSFI	CTRYAG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	605
BstV1I	GCAGC	6 cut(s)	151, 154, 325, 328, 331, 686
BsuRI	GGCC	2 cut(s)	202, 483
BtrI	CACGTC	1 cut(s)	536
BtsCI	GGATG	3 cut(s)	382, 721, 850
Cac8I	GCNNGC	1 cut(s)	297
CaiI	CAGNNNCTG	1 cut(s)	707
CciI	TCATGA	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	3 cut(s)	206, 458, 722
CviAII	CATG	8 cut(s)	52, 296, 319, 326, 529, 620, 749, 836
CviQI	GTAC	3 cut(s)	206, 458, 722
DdeI	CTNAG	5 cut(s)	146, 374, 648, 777, 894
DpnI	GATC	1 cut(s)	612
DpnII	GATC	1 cut(s)	610
DriI	GACNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	481
Eam1105I	GACNNNNNGTC	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	690
Eco32I	GATATC	1 cut(s)	473
Eco57I	CTGAAG	2 cut(s)	686, 849
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	33
EcoRII	CCWGG	2 cut(s)	288, 876
EcoRV	GATATC	1 cut(s)	473
EcoT38I	GRGCYC	1 cut(s)	690
FaeI	CATG	8 cut(s)	55, 299, 322, 329, 532, 623, 752, 839
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	8 cut(s)	51, 295, 318, 325, 528, 619, 748, 835
Fnu4HI	GCNGC	6 cut(s)	140, 143, 339, 342, 345, 675
FokI	GGATG	3 cut(s)	369, 728, 857
FriOI	GRGCYC	1 cut(s)	690
Fsp4HI	GCNGC	6 cut(s)	140, 143, 339, 342, 345, 675
FspBI	CTAG	3 cut(s)	30, 230, 901
GluI	GCNGC	6 cut(s)	140, 143, 339, 342, 345, 675
HaeIII	GGCC	2 cut(s)	202, 483
Hin1II	CATG	8 cut(s)	55, 299, 322, 329, 532, 623, 752, 839
HinfI	GANTC	5 cut(s)	184, 322, 434, 644, 892
HphI	GGTGA	2 cut(s)	422, 478
Hpy188I	TCNGA	3 cut(s)	149, 566, 649
Hpy188III	TCNNGA	5 cut(s)	92, 326, 389, 691, 713
HpyCH4III	ACNGT	4 cut(s)	15, 307, 462, 505
HpyCH4IV	ACGT	3 cut(s)	514, 535, 817
HpyCH4V	TGCA	8 cut(s)	4, 139, 417, 490, 518, 626, 632, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 344, 350, 878
HpyF3I	CTNAG	5 cut(s)	146, 374, 648, 777, 894
HpySE526I	ACGT	3 cut(s)	514, 535, 817
Hsp92II	CATG	8 cut(s)	55, 299, 322, 329, 532, 623, 752, 839
Kzo9I	GATC	1 cut(s)	610
LmnI	GCTCC	2 cut(s)	130, 740
Lsp1109I	GCAGC	6 cut(s)	151, 154, 325, 328, 331, 686
LweI	GCATC	4 cut(s)	85, 391, 613, 742
MaeI	CTAG	3 cut(s)	30, 230, 901
MaeII	ACGT	3 cut(s)	514, 535, 817
MaeIII	GTNAC	6 cut(s)	82, 121, 271, 422, 493, 818
MalI	GATC	1 cut(s)	612
MboI	GATC	1 cut(s)	610
MboII	GAAGA	1 cut(s)	842
MfeI	CAATTG	2 cut(s)	519, 606
MhlI	GDGCHC	3 cut(s)	135, 605, 690
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	6 cut(s)	8, 33, 87, 519, 554, 606
MluNI	TGGCCA	1 cut(s)	483
MlyI	GAGTC	2 cut(s)	331, 886
MnlI	CCTC	6 cut(s)	121, 237, 275, 396, 800, 803
Mox20I	TGGCCA	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	5 cut(s)	102, 180, 240, 731, 773
Msp20I	TGGCCA	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	801
MspCI	CTTAAG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	290, 878
MunI	CAATTG	2 cut(s)	519, 606
Mva1269I	GAATGC	2 cut(s)	419, 881
MvaI	CCWGG	2 cut(s)	290, 878
MwoI	GCNNNNNNNGC	4 cut(s)	139, 344, 350, 878
NdeII	GATC	1 cut(s)	610
NlaIII	CATG	8 cut(s)	55, 299, 322, 329, 532, 623, 752, 839
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	2 cut(s)	82, 818
NspI	RCATGY	2 cut(s)	299, 839
NspV	TTCGAA	1 cut(s)	659
PaeI	GCATGC	1 cut(s)	299
PagI	TCATGA	1 cut(s)	325
PasI	CCCWGGG	1 cut(s)	289
PciI	ACATGT	1 cut(s)	835
PcsI	WCGNNNNNNNCGW	1 cut(s)	458
PctI	GAATGC	2 cut(s)	419, 881
PfeI	GAWTC	3 cut(s)	184, 434, 644
PkrI	GCNGC	6 cut(s)	141, 144, 340, 343, 346, 676
PleI	GAGTC	2 cut(s)	330, 886
PpsI	GAGTC	2 cut(s)	330, 886
Ppu21I	YACGTR	1 cut(s)	515
PscI	ACATGT	1 cut(s)	835
PshBI	ATTAAT	1 cut(s)	731
Psp6I	CCWGG	2 cut(s)	288, 876
PspGI	CCWGG	2 cut(s)	288, 876
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	200
PstNI	CAGNNNCTG	1 cut(s)	707
RsaI	GTAC	3 cut(s)	207, 459, 723
RsaNI	GTAC	3 cut(s)	206, 458, 722
SaqAI	TTAA	5 cut(s)	102, 180, 240, 731, 773
SatI	GCNGC	6 cut(s)	140, 143, 339, 342, 345, 675
Sau3AI	GATC	1 cut(s)	610
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	2 cut(s)	331, 886
ScrFI	CCNGG	2 cut(s)	290, 878
SduI	GDGCHC	3 cut(s)	135, 605, 690
SfaNI	GCATC	4 cut(s)	85, 391, 613, 742
SfcI	CTRYAG	1 cut(s)	73
SfuI	TTCGAA	1 cut(s)	659
SmlI	CTYRAG	3 cut(s)	101, 387, 689
SmoI	CTYRAG	3 cut(s)	101, 387, 689
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	6 cut(s)	8, 33, 87, 519, 554, 606
SsiI	CCGC	2 cut(s)	347, 799
SspMI	CTAG	3 cut(s)	30, 230, 901
StyD4I	CCNGG	2 cut(s)	288, 876
TaaI	ACNGT	4 cut(s)	15, 307, 462, 505
TaiI	ACGT	3 cut(s)	517, 538, 820
TaqI	TCGA	3 cut(s)	475, 659, 805
TasI	AATT	6 cut(s)	8, 33, 87, 519, 554, 606
TatI	WGTACW	1 cut(s)	205
TfiI	GAWTC	3 cut(s)	184, 434, 644
Tru1I	TTAA	5 cut(s)	102, 180, 240, 731, 773
Tru9I	TTAA	5 cut(s)	102, 180, 240, 731, 773
TseFI	GTSAC	2 cut(s)	82, 818
TseI	GCWGC	6 cut(s)	139, 142, 338, 341, 344, 674
Tsp45I	GTSAC	2 cut(s)	82, 818
TspDTI	ATGAA	2 cut(s)	732, 874
Vha464I	CTTAAG	1 cut(s)	101
VspI	ATTAAT	1 cut(s)	731
XapI	RAATTY	1 cut(s)	33
XceI	RCATGY	2 cut(s)	299, 839
XcmI	CCANNNNNNNNNTGG	2 cut(s)	165, 296
XspI	CTAG	3 cut(s)	30, 230, 901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.