Rmu_sc0004180.1_g000035

Allantoate

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004180.1
Physical Location & Seq
Reverse (-)
177933 .. 180623
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004180.1_g000035.1.cds

Sequence Viewer

Length: 891 bp
atgaccaaatcgatccagtggctgccgactcgtcccccaccatcgatccccttctgtgcaagctcgaggatgccatccatcggatcatcgtgcgcaagtcaacacctaattggctcctcttgtccccggtgcgtactgggtcctgccgccgaggtcgagatcgcactgcctggcccagctggtggagaatctggcgaatctgttgacagaggaggagtccatgtcgatgaccactgttcgaggctggccttcttcctcctatttcattcaagtggtgtgacaattcaagatgctcttaagaaaaactccattgaagttacagaggagcacttgcagcagctcagatatgacccaaagtcagtttggggttatgttgagattcacattgaacaagggcctgtactggaatgggttggttttcctctaggagttgttaaaggcatagctggacagacaagactaaaggttacaatgagaggttcccaggggcatgctggaacagttccaatgtccatgcgtcatgaccctatggctgctgctgcggaagccattgtattgttagaaagcctatgtaagcatcctcaagattttctgtcttttgatggtcgatgcaaaagttactcattagaatcactttcaacttactcgtttgtaccgttggtaacattcacagtagatttacgtgcaattgatgacatgggacgtgaagctgttcatgatgcaaatgcagtcatttgcgattctgagctgacttcgaagctgacgtcagcaacttatcttgggctcaagagaatgacaggttctgttcaggatgaagtacctgtattaatgagtggagcaggacatgatgcaatggctctgtctcatttaactaaggtttgttatctttaa

Protein Analysis

296

Amino Acids

31.85

Weight (kDa)

5.93

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20070 AT4G20070
fragaria_vesca FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica MD10G1228200.v1.1
prunus_persica Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis pycom10g19170
rosa_chinensis RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 767
Acc16I TGCGCA 1 cut(s) 94
AccB7I CCANNNNNTGG 1 cut(s) 182
AciI CCGC 2 cut(s) 147, 542
AclWI GGATC 3 cut(s) 7, 40, 91
AcyI GRCGYC 1 cut(s) 764
AfaI GTAC 4 cut(s) 135, 402, 654, 819
AfiI CCNNNNNNNGG 2 cut(s) 80, 182
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 5 cut(s) 270, 287, 314, 389, 639
AhdI GACNNNNNGTC 1 cut(s) 355
AjiI CACGTC 1 cut(s) 704
AjnI CCWGG 2 cut(s) 169, 483
AluBI AGCT 7 cut(s) 63, 179, 340, 446, 710, 748, 760
AluI AGCT 7 cut(s) 63, 179, 340, 446, 710, 748, 760
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 867
AlwI GGATC 3 cut(s) 7, 40, 91
AlwNI CAGNNNCTG 2 cut(s) 22, 803
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 3 cut(s) 172, 246, 395
ApeKI GCWGC 6 cut(s) 22, 334, 337, 533, 536, 539
ArsI GACNNNNNNTTYG 2 cut(s) 749, 781
AseI ATTAAT 1 cut(s) 827
Asp700I GAANNNNTTC 1 cut(s) 711
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 3 cut(s) 140, 173, 395
AsuC2I CCSGG 1 cut(s) 127
AsuII TTCGAA 1 cut(s) 755
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 6 cut(s) 9, 346, 349, 520, 523, 526
BccI CCATC 4 cut(s) 49, 82, 86, 596
BciT130I CCWGG 2 cut(s) 171, 485
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 867
BfaI CTAG 1 cut(s) 425
BfrI CTTAAG 1 cut(s) 296
BisI GCNGC 7 cut(s) 23, 147, 335, 338, 534, 537, 540
BlsI GCNGC 7 cut(s) 24, 148, 336, 339, 535, 538, 541
Bme1390I CCNGG 3 cut(s) 127, 171, 485
Bme18I GGWCC 1 cut(s) 140
BmeRI GACNNNNNGTC 1 cut(s) 355
BmeT110I CYCGRG 1 cut(s) 64
BmgBI CACGTC 1 cut(s) 704
BmgT120I GGNCC 3 cut(s) 140, 173, 395
BmiI GGNNCC 3 cut(s) 115, 141, 481
BmrFI CCNGG 3 cut(s) 127, 171, 485
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 6 cut(s) 60, 280, 586, 599, 709, 838
BmuI ACTGGG 1 cut(s) 146
Bpu14I TTCGAA 1 cut(s) 755
BpuEI CTTGAG 2 cut(s) 567, 770
BpuMI CCSGG 1 cut(s) 127
Bsa29I ATCGAT 2 cut(s) 11, 44
BsaAI YACGTR 1 cut(s) 683
BsaHI GRCGYC 1 cut(s) 764
BsaJI CCNNGG 4 cut(s) 125, 150, 483, 484
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 182
Bse1I ACTGG 3 cut(s) 16, 141, 408
Bse3DI GCAATG 1 cut(s) 858
BseBI CCWGG 2 cut(s) 171, 485
BseCI ATCGAT 2 cut(s) 11, 44
BseDI CCNNGG 4 cut(s) 125, 150, 483, 484
BseGI GGATG 4 cut(s) 74, 75, 577, 817
BseLI CCNNNNNNNGG 2 cut(s) 80, 182
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 2 cut(s) 355, 735
BseNI ACTGG 3 cut(s) 16, 141, 408
BseRI GAGGAG 4 cut(s) 106, 225, 228, 338
BseXI GCAGC 6 cut(s) 9, 346, 349, 520, 523, 526
BseYI CCCAGC 1 cut(s) 175
BshFI GGCC 3 cut(s) 174, 248, 397
BshVI ATCGAT 2 cut(s) 11, 44
BsiHKAI GWGCWC 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 127
BslFI GGGAC 3 cut(s) 18, 108, 714
BslI CCNNNNNNNGG 2 cut(s) 80, 182
BsmAI GTCTC 1 cut(s) 867
BsmFI GGGAC 3 cut(s) 18, 108, 714
BsnI GGCC 3 cut(s) 174, 248, 397
BsoBI CYCGRG 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 755
Bsp1286I GDGCHC 2 cut(s) 330, 786
Bsp143I GATC 4 cut(s) 12, 45, 83, 159
BspACI CCGC 2 cut(s) 147, 542
BspANI GGCC 3 cut(s) 174, 248, 397
BspCNI CTCAG 2 cut(s) 354, 736
BspDI ATCGAT 2 cut(s) 11, 44
BspHI TCATGA 2 cut(s) 520, 715
BspLI GGNNCC 3 cut(s) 115, 141, 481
BspPI GGATC 3 cut(s) 7, 40, 91
BspT104I TTCGAA 1 cut(s) 755
BspTI CTTAAG 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 858
BsrI ACTGG 3 cut(s) 16, 141, 408
BssECI CCNNGG 4 cut(s) 125, 150, 483, 484
BssMI GATC 4 cut(s) 12, 45, 83, 159
BssNI GRCGYC 1 cut(s) 764
Bst2UI CCWGG 2 cut(s) 171, 485
Bst4CI ACNGT 4 cut(s) 236, 502, 657, 673
BstACI GRCGYC 1 cut(s) 764
BstAFI CTTAAG 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 683
BstBI TTCGAA 1 cut(s) 755
BstC8I GCNNGC 3 cut(s) 61, 246, 492
BstDEI CTNAG 3 cut(s) 341, 744, 873
BstF5I GGATG 4 cut(s) 74, 75, 577, 817
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 4 cut(s) 15, 48, 86, 162
BstMAI GTCTC 1 cut(s) 867
BstMBI GATC 4 cut(s) 12, 45, 83, 159
BstMWI GCNNNNNNNGC 3 cut(s) 334, 539, 545
BstNI CCWGG 2 cut(s) 171, 485
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 3 cut(s) 125, 169, 483
BstV1I GCAGC 6 cut(s) 9, 346, 349, 520, 523, 526
Bsu15I ATCGAT 2 cut(s) 11, 44
BsuRI GGCC 3 cut(s) 174, 248, 397
BsuTUI ATCGAT 2 cut(s) 11, 44
BtrI CACGTC 1 cut(s) 704
BtsCI GGATG 4 cut(s) 74, 75, 577, 817
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 3 cut(s) 23, 164, 232
Cac8I GCNNGC 3 cut(s) 61, 246, 492
CaiI CAGNNNCTG 2 cut(s) 22, 803
CciI TCATGA 2 cut(s) 520, 715
CfoI GCGC 1 cut(s) 95
Cfr13I GGNCC 3 cut(s) 140, 173, 395
ClaI ATCGAT 2 cut(s) 11, 44
CseI GACGC 1 cut(s) 506
Csp6I GTAC 4 cut(s) 134, 401, 653, 818
CviAII CATG 7 cut(s) 221, 491, 514, 521, 697, 716, 845
CviQI GTAC 4 cut(s) 134, 401, 653, 818
DdeI CTNAG 3 cut(s) 341, 744, 873
DpnI GATC 4 cut(s) 14, 47, 85, 161
DpnII GATC 4 cut(s) 12, 45, 83, 159
DriI GACNNNNNGTC 1 cut(s) 355
Eam1105I GACNNNNNGTC 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 786
Eco47I GGWCC 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 64
EcoO109I RGGNCCY 2 cut(s) 140, 395
EcoRII CCWGG 2 cut(s) 169, 483
EcoT38I GRGCYC 1 cut(s) 786
FaeI CATG 7 cut(s) 224, 494, 517, 524, 700, 719, 848
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 3 cut(s) 18, 108, 714
FatI CATG 7 cut(s) 220, 490, 513, 520, 696, 715, 844
Fnu4HI GCNGC 7 cut(s) 23, 147, 335, 338, 534, 537, 540
FokI GGATG 4 cut(s) 61, 82, 564, 824
FriOI GRGCYC 1 cut(s) 786
Fsp4HI GCNGC 7 cut(s) 23, 147, 335, 338, 534, 537, 540
FspBI CTAG 1 cut(s) 425
FspI TGCGCA 1 cut(s) 94
GlaI GCGC 1 cut(s) 94
GluI GCNGC 7 cut(s) 23, 147, 335, 338, 534, 537, 540
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 3 cut(s) 174, 248, 397
HapII CCGG 1 cut(s) 127
HgaI GACGC 1 cut(s) 506
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 764
Hin1II CATG 7 cut(s) 224, 494, 517, 524, 700, 719, 848
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 2 cut(s) 101, 205
HindII GTYRAC 2 cut(s) 101, 205
HinfI GANTC 7 cut(s) 28, 188, 197, 216, 379, 629, 740
HpaII CCGG 1 cut(s) 127
Hpy166II GTNNAC 2 cut(s) 101, 205
Hpy188I TCNGA 3 cut(s) 83, 344, 745
Hpy188III TCNNGA 7 cut(s) 157, 287, 521, 584, 716, 787, 809
Hpy8I GTNNAC 2 cut(s) 101, 205
HpyAV CCTTC 2 cut(s) 61, 259
HpyCH4III ACNGT 4 cut(s) 236, 502, 657, 673
HpyCH4IV ACGT 3 cut(s) 682, 703, 764
HpyCH4V TGCA 7 cut(s) 59, 334, 612, 686, 722, 728, 851
HpyF10VI GCNNNNNNNGC 3 cut(s) 334, 539, 545
HpyF3I CTNAG 3 cut(s) 341, 744, 873
HpySE526I ACGT 3 cut(s) 682, 703, 764
Hsp92I GRCGYC 1 cut(s) 764
Hsp92II CATG 7 cut(s) 224, 494, 517, 524, 700, 719, 848
HspAI GCGC 1 cut(s) 93
Kzo9I GATC 4 cut(s) 12, 45, 83, 159
LmnI GCTCC 3 cut(s) 119, 325, 836
Lsp1109I GCAGC 6 cut(s) 9, 346, 349, 520, 523, 526
LweI GCATC 6 cut(s) 60, 280, 586, 599, 709, 838
MaeI CTAG 1 cut(s) 425
MaeII ACGT 3 cut(s) 682, 703, 764
MaeIII GTNAC 5 cut(s) 277, 316, 466, 617, 661
MalI GATC 4 cut(s) 14, 47, 85, 161
MboI GATC 4 cut(s) 12, 45, 83, 159
MboII GAAGA 1 cut(s) 244
MfeI CAATTG 1 cut(s) 687
MhlI GDGCHC 2 cut(s) 330, 786
MluCI AATT 3 cut(s) 108, 282, 687
MlyI GAGTC 2 cut(s) 22, 225
MroXI GAANNNNTTC 1 cut(s) 711
MseI TTAA 5 cut(s) 297, 435, 827, 869, 889
MslI CAYNNNNRTG 2 cut(s) 225, 270
MspA1I CMGCKG 1 cut(s) 179
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 3 cut(s) 127, 171, 485
MunI CAATTG 1 cut(s) 687
MvaI CCWGG 2 cut(s) 171, 485
MwoI GCNNNNNNNGC 3 cut(s) 334, 539, 545
NciI CCSGG 1 cut(s) 127
NdeII GATC 4 cut(s) 12, 45, 83, 159
NlaIII CATG 7 cut(s) 224, 494, 517, 524, 700, 719, 848
NlaIV GGNNCC 3 cut(s) 115, 141, 481
NmeAIII GCCGAG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 277
NsbI TGCGCA 1 cut(s) 94
NspI RCATGY 1 cut(s) 494
NspV TTCGAA 1 cut(s) 755
PaeI GCATGC 1 cut(s) 494
PaeR7I CTCGAG 1 cut(s) 64
PagI TCATGA 2 cut(s) 520, 715
PasI CCCWGGG 1 cut(s) 484
PcsI WCGNNNNNNNCGW 2 cut(s) 653, 761
PdmI GAANNNNTTC 1 cut(s) 711
PfeI GAWTC 5 cut(s) 188, 197, 379, 629, 740
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 7 cut(s) 24, 148, 336, 339, 535, 538, 541
PleI GAGTC 2 cut(s) 22, 224
PpsI GAGTC 2 cut(s) 22, 224
Ppu21I YACGTR 1 cut(s) 683
PpuMI RGGWCCY 1 cut(s) 140
PshBI ATTAAT 1 cut(s) 827
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 2 cut(s) 169, 483
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 2 cut(s) 169, 483
PspN4I GGNNCC 3 cut(s) 115, 141, 481
PspPI GGNCC 3 cut(s) 140, 173, 395
PspPPI RGGWCCY 1 cut(s) 140
PspXI VCTCGAGB 1 cut(s) 64
PstNI CAGNNNCTG 2 cut(s) 22, 803
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 4 cut(s) 135, 402, 654, 819
RsaNI GTAC 4 cut(s) 134, 401, 653, 818
RseI CAYNNNNRTG 2 cut(s) 225, 270
SaqAI TTAA 5 cut(s) 297, 435, 827, 869, 889
SatI GCNGC 7 cut(s) 23, 147, 335, 338, 534, 537, 540
Sau3AI GATC 4 cut(s) 12, 45, 83, 159
Sau96I GGNCC 3 cut(s) 140, 173, 395
SchI GAGTC 2 cut(s) 22, 225
ScrFI CCNGG 3 cut(s) 127, 171, 485
SduI GDGCHC 2 cut(s) 330, 786
SfaNI GCATC 6 cut(s) 60, 280, 586, 599, 709, 838
Sfr274I CTCGAG 1 cut(s) 64
SfuI TTCGAA 1 cut(s) 755
SinI GGWCC 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 64
SmiMI CAYNNNNRTG 2 cut(s) 225, 270
SmlI CTYRAG 4 cut(s) 64, 296, 582, 785
SmoI CTYRAG 4 cut(s) 64, 296, 582, 785
SphI GCATGC 1 cut(s) 494
Sse9I AATT 3 cut(s) 108, 282, 687
SsiI CCGC 2 cut(s) 147, 542
SspMI CTAG 1 cut(s) 425
StyD4I CCNGG 3 cut(s) 125, 169, 483
TaaI ACNGT 4 cut(s) 236, 502, 657, 673
TaiI ACGT 3 cut(s) 685, 706, 767
TaqI TCGA 8 cut(s) 11, 44, 65, 156, 225, 239, 607, 755
TasI AATT 3 cut(s) 108, 282, 687
TatI WGTACW 1 cut(s) 400
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 5 cut(s) 188, 197, 379, 629, 740
Tru1I TTAA 5 cut(s) 297, 435, 827, 869, 889
Tru9I TTAA 5 cut(s) 297, 435, 827, 869, 889
TscAI CASTG 3 cut(s) 23, 171, 239
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 6 cut(s) 22, 334, 337, 533, 536, 539
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 3 cut(s) 254, 704, 828
TspRI CASTG 3 cut(s) 23, 171, 239
Van91I CCANNNNNTGG 1 cut(s) 182
Vha464I CTTAAG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 140
VspI ATTAAT 1 cut(s) 827
XceI RCATGY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 2 cut(s) 360, 491
XhoI CTCGAG 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 711
XspI CTAG 1 cut(s) 425
ZraI GACGTC 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.