Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

15220463 .. 15223629

Gene Structure 3167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG164200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGGCAGTTGCTACACGTGTCTCCCACAGAACCCATTCCGCCATTAGTCCCACCTCCGTTTTGGCTCTGGCTTGCCATTTCTTGCTTCTGGTCTCTTCAGCCATCACTCCCTGTTTTGGGTTTTCTGGTGTTGGAGGAGAAGATGAGGGAAACAGAGGAGGGGATTTGTATCCTGAAATTTTGAGGGATGAAGCTGTGTCAAGACTTCATCAGCTTGGAAAGGTAAGTGATGGTGATGGCTATCTTGAGAGGATATTCATGAGCCCGGGGGCTGTGAGGGCAGGAAATCTAATCCGCGAATGGATGGAGGATGCTGGTTTGCGAACGTGGGTTGATTGCTTGGGAAATATACATGGTCGAGTTGAGGGAAGGAATGCTAGTGCTGAAGCTCTGTTAATTGGTTCCCATTTGGACACTGTTGTCGATGCCGGGATATTTGATGGGTCTTTAGGCATAATTTCTGTGTTATCAGCATTGAAGGTTTTGAGTATCAATGGCAAGTTGGGAGAACTAAAGCGGCCAGTTGAGGTAATTGCGTTTAGTGATGAAGAAGGAGTAAGGTTTCAATCTACATTCATAGGAAGTGCTGCCATAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGGTGTGACTATTCAAGATGCTCTTAAGAAAAACTCCATAGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATGTTGAGATTCACATTGAACAAGGGCCTGTACTGGAGTGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACGATGAGAGGTTCCCAGGGGCATGCCGGAACAGTTCCAATGTCCATGCGTCATGACCCTATGGCTGCTGCTGCAGAAGCCATTGTATTATTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGATGGTCAATGCAAAAGTTACTCATTAGAATCACTTTCAACTTCACTCGTTTGTACTGTTGGTGAGATATCGACTTGGCCAAGTGCAAGTAATGTTATTCCAGGACAGGTAACATTCACAGTAGATTTACGTGCAATCGATGACATGGGTCGTGAAGCTGTTGTATATGAATTTTCCAACCGATTGTATCAATTATGTGATAGGCGTTCAGTTTCGTGTACAATTGATCGTAAGCATGATGCAAATGCAGTCATTTGTGATTCTGACCTGACTTCGAAGCTGAAGTCTGCTGCTTATCTTGGGCTCAAGAGAATGACAGGTTATGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATGTAGCTAAGGTGGGTATGCTTTTTGTCCGCTGTCGAGGAGGCATAAGTCACTCCCCTGAAGAACATGTATTGGATGATGATGTTTGGGCATCTGCTTTGGCAATCCTGGCATTCATAGAGACTCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

494

Amino Acids

53.19

Weight (kDa)

5.46

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	116 - 199	4.7e-08	Peptidase family M28
Peptidase_M20	PF01546	132 - 491	4.8e-15	Peptidase family M20/M25/M40
M20_dimer	PF07687	272 - 385	1.4e-07	Peptidase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AccII	CGCG	1 cut(s)	297
AciI	CCGC	4 cut(s)	39, 295, 517, 1381
AcoI	YGGCCR	2 cut(s)	518, 1043
AcsI	RAATTY	3 cut(s)	177, 600, 1136
AcuI	CTGAAG	4 cut(s)	81, 405, 1268, 1431
AcvI	CACGTG	1 cut(s)	17
AfaI	GTAC	4 cut(s)	768, 1021, 1186, 1305
AfiI	CCNNNNNNNGG	2 cut(s)	116, 117
AflII	CTTAAG	1 cut(s)	662
AflIII	ACRYGT	3 cut(s)	14, 16, 1417
AgsI	TTSAA	5 cut(s)	478, 566, 653, 755, 1005
AhdI	GACNNNNNGTC	1 cut(s)	721
AjnI	CCWGG	3 cut(s)	849, 1066, 1458
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	4 cut(s)	25, 97, 1353, 1466
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	3 cut(s)	518, 761, 1043
ApeKI	GCWGC	7 cut(s)	587, 700, 703, 899, 902, 905, 1256
ApoI	RAATTY	3 cut(s)	177, 600, 1136
ArsI	GACNNNNNNTTYG	2 cut(s)	1235, 1267
AseI	ATTAAT	1 cut(s)	1313
Asp700I	GAANNNNTTC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	761
AsuC2I	CCSGG	3 cut(s)	266, 267, 430
AsuHPI	GGTGA	2 cut(s)	245, 1040
AsuII	TTCGAA	1 cut(s)	1241
AvaI	CYCGRG	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	1045
BanII	GRGCYC	2 cut(s)	266, 1272
BbrPI	CACGTG	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	696
BbvI	GCAGC	7 cut(s)	574, 712, 715, 886, 889, 892, 1243
BccI	CCATC	6 cut(s)	110, 224, 230, 298, 434, 962
BciT130I	CCWGG	3 cut(s)	851, 1068, 1460
BciVI	GTATCC	1 cut(s)	180
BcnI	CCSGG	3 cut(s)	266, 267, 430
BcoDI	GTCTC	4 cut(s)	25, 97, 1353, 1466
BfaI	CTAG	3 cut(s)	378, 791, 1483
BfmI	CTRYAG	1 cut(s)	906
BfrI	CTTAAG	1 cut(s)	662
BfuI	GTATCC	1 cut(s)	180
BisI	GCNGC	8 cut(s)	518, 588, 701, 704, 900, 903, 906, 1257
BlsI	GCNGC	8 cut(s)	519, 589, 702, 705, 901, 904, 907, 1258
Bme1390I	CCNGG	6 cut(s)	266, 267, 430, 851, 1068, 1460
BmeRI	GACNNNNNGTC	1 cut(s)	721
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	761
BmiI	GGNNCC	2 cut(s)	403, 847
BmrFI	CCNGG	6 cut(s)	266, 267, 430, 851, 1068, 1460
BmsI	GCATC	7 cut(s)	301, 415, 646, 952, 1195, 1324, 1451
BoxI	GACNNNNGTC	1 cut(s)	1113
BpmI	CTGGAG	1 cut(s)	791
Bpu10I	CCTNAGC	1 cut(s)	1359
Bpu14I	TTCGAA	1 cut(s)	1241
BpuEI	CTTGAG	3 cut(s)	266, 933, 1256
BpuMI	CCSGG	3 cut(s)	266, 267, 430
Bsa29I	ATCGAT	1 cut(s)	1104
BsaAI	YACGTR	2 cut(s)	17, 1097
BsaBI	GATNNNNATC	2 cut(s)	168, 240
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	4 cut(s)	265, 266, 849, 850
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 117
Bse1I	ACTGG	3 cut(s)	521, 608, 774
Bse3DI	GCAATG	1 cut(s)	1344
Bse8I	GATNNNNATC	2 cut(s)	168, 240
BseBI	CCWGG	3 cut(s)	851, 1068, 1460
BseCI	ATCGAT	1 cut(s)	1104
BseDI	CCNNGG	4 cut(s)	265, 266, 849, 850
BseGI	GGATG	6 cut(s)	193, 309, 316, 943, 1303, 1432
BseJI	GATNNNNATC	2 cut(s)	168, 240
BseLI	CCNNNNNNNGG	2 cut(s)	116, 117
BseMI	GCAATG	1 cut(s)	1344
BseMII	CTCAG	1 cut(s)	721
BseNI	ACTGG	3 cut(s)	521, 608, 774
BseRI	GAGGAG	4 cut(s)	150, 171, 704, 1404
BseXI	GCAGC	7 cut(s)	574, 712, 715, 886, 889, 892, 1243
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	3 cut(s)	520, 763, 1045
BshVI	ATCGAT	1 cut(s)	1104
BsiHKAI	GWGCWC	1 cut(s)	696
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	3 cut(s)	266, 429, 861
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	116, 117
BsmAI	GTCTC	4 cut(s)	25, 97, 1353, 1466
BsmFI	GGGAC	1 cut(s)	33
BsmI	GAATGC	2 cut(s)	379, 1463
BsnI	GGCC	3 cut(s)	520, 763, 1045
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	265
Bsp119I	TTCGAA	1 cut(s)	1241
Bsp1286I	GDGCHC	3 cut(s)	266, 696, 1272
Bsp1407I	TGTACA	1 cut(s)	1184
Bsp143I	GATC	1 cut(s)	1192
BspACI	CCGC	4 cut(s)	39, 295, 517, 1381
BspANI	GGCC	3 cut(s)	520, 763, 1045
BspCNI	CTCAG	1 cut(s)	720
BspDI	ATCGAT	1 cut(s)	1104
BspFNI	CGCG	1 cut(s)	297
BspHI	TCATGA	2 cut(s)	258, 886
BspLI	GGNNCC	2 cut(s)	403, 847
BspMAI	CTGCAG	1 cut(s)	910
BspT104I	TTCGAA	1 cut(s)	1241
BspTI	CTTAAG	1 cut(s)	662
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	1344
BsrGI	TGTACA	1 cut(s)	1184
BsrI	ACTGG	3 cut(s)	521, 608, 774
BssECI	CCNNGG	4 cut(s)	265, 266, 849, 850
BssMI	GATC	1 cut(s)	1192
Bst2UI	CCWGG	3 cut(s)	851, 1068, 1460
Bst4CI	ACNGT	4 cut(s)	418, 868, 1024, 1087
Bst6I	CTCTTC	1 cut(s)	100
BstAFI	CTTAAG	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	1184
BstBAI	YACGTR	2 cut(s)	17, 1097
BstBI	TTCGAA	1 cut(s)	1241
BstC8I	GCNNGC	2 cut(s)	73, 858
BstDEI	CTNAG	3 cut(s)	707, 1359, 1476
BstF5I	GGATG	6 cut(s)	193, 309, 316, 943, 1303, 1432
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	1 cut(s)	1195
BstMAI	GTCTC	4 cut(s)	25, 97, 1353, 1466
BstMBI	GATC	1 cut(s)	1192
BstMWI	GCNNNNNNNGC	6 cut(s)	278, 593, 700, 905, 911, 1460
BstNI	CCWGG	3 cut(s)	851, 1068, 1460
BstNSI	RCATGY	2 cut(s)	860, 1421
BstPAI	GACNNNNGTC	1 cut(s)	1113
BstSCI	CCNGG	6 cut(s)	264, 265, 428, 849, 1066, 1458
BstSFI	CTRYAG	1 cut(s)	906
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	7 cut(s)	574, 712, 715, 886, 889, 892, 1243
Bsu15I	ATCGAT	1 cut(s)	1104
BsuI	GTATCC	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	520, 763, 1045
BsuTUI	ATCGAT	1 cut(s)	1104
BtsCI	GGATG	6 cut(s)	193, 309, 316, 943, 1303, 1432
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	2 cut(s)	414, 617
Cac8I	GCNNGC	2 cut(s)	73, 858
CciI	TCATGA	2 cut(s)	258, 886
Cfr13I	GGNCC	1 cut(s)	761
Cfr9I	CCCGGG	1 cut(s)	265
ClaI	ATCGAT	1 cut(s)	1104
CseI	GACGC	1 cut(s)	872
Csp6I	GTAC	4 cut(s)	767, 1020, 1185, 1304
CviQI	GTAC	4 cut(s)	767, 1020, 1185, 1304
DdeI	CTNAG	3 cut(s)	707, 1359, 1476
DpnI	GATC	1 cut(s)	1194
DpnII	GATC	1 cut(s)	1192
DrdI	GACNNNNNNGTC	1 cut(s)	419
DriI	GACNNNNNGTC	1 cut(s)	721
DseDI	GACNNNNNNGTC	1 cut(s)	419
EaeI	YGGCCR	2 cut(s)	518, 1043
Eam1104I	CTCTTC	1 cut(s)	100
Eam1105I	GACNNNNNGTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	28
Eco24I	GRGCYC	2 cut(s)	266, 1272
Eco31I	GGTCTC	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	1035
Eco57I	CTGAAG	4 cut(s)	81, 405, 1268, 1431
Eco72I	CACGTG	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRII	CCWGG	3 cut(s)	849, 1066, 1458
EcoRV	GATATC	1 cut(s)	1035
EcoT38I	GRGCYC	2 cut(s)	266, 1272
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	1 cut(s)	33
Fnu4HI	GCNGC	8 cut(s)	518, 588, 701, 704, 900, 903, 906, 1257
FokI	GGATG	6 cut(s)	200, 316, 323, 930, 1310, 1439
FriOI	GRGCYC	2 cut(s)	266, 1272
Fsp4HI	GCNGC	8 cut(s)	518, 588, 701, 704, 900, 903, 906, 1257
FspBI	CTAG	3 cut(s)	378, 791, 1483
GluI	GCNGC	8 cut(s)	518, 588, 701, 704, 900, 903, 906, 1257
GsuI	CTGGAG	1 cut(s)	791
HaeIII	GGCC	3 cut(s)	520, 763, 1045
HapII	CCGG	3 cut(s)	266, 429, 861
HgaI	GACGC	1 cut(s)	872
HinfI	GANTC	4 cut(s)	745, 995, 1226, 1474
HpaII	CCGG	3 cut(s)	266, 429, 861
HphI	GGTGA	2 cut(s)	245, 1040
Hpy166II	GTNNAC	1 cut(s)	1185
Hpy188I	TCNGA	2 cut(s)	710, 1231
Hpy8I	GTNNAC	1 cut(s)	1185
HpyAV	CCTTC	3 cut(s)	363, 472, 545
HpyCH4III	ACNGT	4 cut(s)	418, 868, 1024, 1087
HpyCH4IV	ACGT	3 cut(s)	16, 326, 1096
HpyCH4V	TGCA	9 cut(s)	622, 700, 908, 978, 1052, 1100, 1208, 1214, 1337
HpyF10VI	GCNNNNNNNGC	6 cut(s)	278, 593, 700, 905, 911, 1460
HpyF3I	CTNAG	3 cut(s)	707, 1359, 1476
HpySE526I	ACGT	3 cut(s)	16, 326, 1096
Kzo9I	GATC	1 cut(s)	1192
LmnI	GCTCC	2 cut(s)	691, 1322
Lsp1109I	GCAGC	7 cut(s)	574, 712, 715, 886, 889, 892, 1243
LweI	GCATC	7 cut(s)	301, 415, 646, 952, 1195, 1324, 1451
MaeI	CTAG	3 cut(s)	378, 791, 1483
MaeII	ACGT	3 cut(s)	16, 326, 1096
MaeIII	GTNAC	6 cut(s)	643, 682, 832, 983, 1075, 1400
MalI	GATC	1 cut(s)	1194
MboI	GATC	1 cut(s)	1192
MboII	GAAGA	4 cut(s)	87, 152, 560, 1424
MfeI	CAATTG	1 cut(s)	1188
MhlI	GDGCHC	3 cut(s)	266, 696, 1272
MlsI	TGGCCA	1 cut(s)	1045
MluCI	AATT	8 cut(s)	177, 396, 456, 531, 600, 1136, 1157, 1188
MluNI	TGGCCA	1 cut(s)	1045
MlyI	GAGTC	1 cut(s)	1468
MmeI	TCCRAC	2 cut(s)	112, 1167
Mox20I	TGGCCA	1 cut(s)	1045
MroXI	GAANNNNTTC	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	1045
MseI	TTAA	4 cut(s)	395, 663, 801, 1313
Msp20I	TGGCCA	1 cut(s)	1045
MspA1I	CMGCKG	1 cut(s)	1383
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	3 cut(s)	266, 429, 861
MspR9I	CCNGG	6 cut(s)	266, 267, 430, 851, 1068, 1460
MunI	CAATTG	1 cut(s)	1188
Mva1269I	GAATGC	2 cut(s)	379, 1463
MvaI	CCWGG	3 cut(s)	851, 1068, 1460
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	6 cut(s)	278, 593, 700, 905, 911, 1460
NciI	CCSGG	3 cut(s)	266, 267, 430
NdeII	GATC	1 cut(s)	1192
NlaIV	GGNNCC	2 cut(s)	403, 847
NmuCI	GTSAC	2 cut(s)	643, 1400
NspI	RCATGY	2 cut(s)	860, 1421
NspV	TTCGAA	1 cut(s)	1241
PaeI	GCATGC	1 cut(s)	860
PagI	TCATGA	2 cut(s)	258, 886
PasI	CCCWGGG	1 cut(s)	850
PciI	ACATGT	1 cut(s)	1417
PctI	GAATGC	2 cut(s)	379, 1463
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	3 cut(s)	745, 995, 1226
PfoI	TCCNGGA	1 cut(s)	1066
PkrI	GCNGC	8 cut(s)	519, 589, 702, 705, 901, 904, 907, 1258
PleI	GAGTC	1 cut(s)	1468
PmaCI	CACGTG	1 cut(s)	17
PmlI	CACGTG	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	1468
Ppu21I	YACGTR	2 cut(s)	17, 1097
PscI	ACATGT	1 cut(s)	1417
PshAI	GACNNNNGTC	1 cut(s)	1113
PshBI	ATTAAT	1 cut(s)	1313
Psp6I	CCWGG	3 cut(s)	849, 1066, 1458
PspCI	CACGTG	1 cut(s)	17
PspGI	CCWGG	3 cut(s)	849, 1066, 1458
PspN4I	GGNNCC	2 cut(s)	403, 847
PspPI	GGNCC	1 cut(s)	761
PstI	CTGCAG	1 cut(s)	910
RsaI	GTAC	4 cut(s)	768, 1021, 1186, 1305
RsaNI	GTAC	4 cut(s)	767, 1020, 1185, 1304
SaqAI	TTAA	4 cut(s)	395, 663, 801, 1313
SatI	GCNGC	8 cut(s)	518, 588, 701, 704, 900, 903, 906, 1257
Sau3AI	GATC	1 cut(s)	1192
Sau96I	GGNCC	1 cut(s)	761
SchI	GAGTC	1 cut(s)	1468
ScrFI	CCNGG	6 cut(s)	266, 267, 430, 851, 1068, 1460
SduI	GDGCHC	3 cut(s)	266, 696, 1272
SfaNI	GCATC	7 cut(s)	301, 415, 646, 952, 1195, 1324, 1451
SfcI	CTRYAG	1 cut(s)	906
SfuI	TTCGAA	1 cut(s)	1241
SmaI	CCCGGG	1 cut(s)	267
SmlI	CTYRAG	4 cut(s)	245, 662, 948, 1271
SmoI	CTYRAG	4 cut(s)	245, 662, 948, 1271
SphI	GCATGC	1 cut(s)	860
Sse9I	AATT	8 cut(s)	177, 396, 456, 531, 600, 1136, 1157, 1188
SsiI	CCGC	4 cut(s)	39, 295, 517, 1381
SspMI	CTAG	3 cut(s)	378, 791, 1483
StyD4I	CCNGG	6 cut(s)	264, 265, 428, 849, 1066, 1458
TaaI	ACNGT	4 cut(s)	418, 868, 1024, 1087
TaiI	ACGT	3 cut(s)	19, 329, 1099
TaqI	TCGA	6 cut(s)	358, 423, 1037, 1104, 1241, 1387
TasI	AATT	8 cut(s)	177, 396, 456, 531, 600, 1136, 1157, 1188
TatI	WGTACW	3 cut(s)	766, 1019, 1184
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	3 cut(s)	745, 995, 1226
Tru1I	TTAA	4 cut(s)	395, 663, 801, 1313
Tru9I	TTAA	4 cut(s)	395, 663, 801, 1313
TscAI	CASTG	2 cut(s)	421, 624
TseFI	GTSAC	2 cut(s)	643, 1400
TseI	GCWGC	7 cut(s)	587, 700, 703, 899, 902, 905, 1256
Tsp45I	GTSAC	2 cut(s)	643, 1400
TspDTI	ATGAA	8 cut(s)	197, 204, 247, 561, 565, 1149, 1314, 1456
TspGWI	ACGGA	1 cut(s)	46
TspMI	CCCGGG	1 cut(s)	265
TspRI	CASTG	2 cut(s)	421, 624
Vha464I	CTTAAG	1 cut(s)	662
VspI	ATTAAT	1 cut(s)	1313
XapI	RAATTY	3 cut(s)	177, 600, 1136
XceI	RCATGY	2 cut(s)	860, 1421
XcmI	CCANNNNNNNNNTGG	2 cut(s)	58, 726
XmaI	CCCGGG	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	3 cut(s)	378, 791, 1483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.