RchiOBHm_Chr1g0315091

Allantoate

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
2327915 .. 2330495
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54563

Sequence Viewer

Length: 1107 bp
ATGAGCCCAGCAGCTGTGAGGGCTGGAAATCTTATCTGCGAATGGATGGAGGATGCTGGTTTGCGAACGTGGGTTCATTGCTTGGGACATGTACATGGTCGAGTTGAGGGCACAAATGCTAGTGATGAGGATATTGTTGTTGATGCCGGGATATTTGATGGGTCTTTAGGCATCATTTCTATGGTAATAGCATTTAGTGATGAAGAAGGAGTAAGGTTTCAGTCTACATTCATAGGAAGTGCTGCTATAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGCTGTGACAATTCAAGATGCTCTTAAGAAAAACTCCATTGAAGAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATATTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACAATGAGAGGTTCCCAGGGGCATGCTGGAACTGTTTCAATGATGCGTCATGACCCTATGGCTGCTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGATGGTCAATGCAAAAGTTACTCATTAGAATCACTTTCAACTTCACTCGTTTGTACCGTTGGTGAGATATCGACTTGGCCAAGTGCAAGTAATGTTATTCCAGGACAGGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGACGTGAAGCTGTTGTATGTGAATTATCTAACCGATTGTATCAAATATGTGATAGGCGTTCAGCTTCGTGCACAATTGATCATAAGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGACTTCGAAGCTGAAGTCAGCAGCTTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATACAATGGCTCTGTCTCATTTAACTAAGGTGGGTATGCTTTTTGTCCGCTGTCGAGGAGGCATAAGTCACTTCCCTGAAGAACATGTACTGGATGATATGATGTTTGGGCATCTGGTTTGGCAATCCTGGCATTCATAG

Protein Analysis

368

Amino Acids

39.94

Weight (kDa)

5.4

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
M20_dimer PF07687 151 - 262 2.6e-07 Peptidase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20070 AT4G20070
fragaria_vesca FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica MD10G1228200.v1.1
prunus_persica Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis pycom10g19170
rosa_chinensis RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 224
AciI CCGC 2 cut(s) 542, 1015
AcoI YGGCCR 1 cut(s) 677
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 2 cut(s) 902, 1065
AfaI GTAC 5 cut(s) 93, 405, 655, 939, 1056
AflII CTTAAG 1 cut(s) 317
AflIII ACRYGT 2 cut(s) 88, 1051
AgsI TTSAA 5 cut(s) 308, 335, 392, 510, 639
AhdI GACNNNNNGTC 1 cut(s) 358
AjiI CACGTC 1 cut(s) 752
AjnI CCWGG 3 cut(s) 486, 700, 1094
AluBI AGCT 9 cut(s) 14, 251, 343, 449, 758, 812, 868, 880, 893
AluI AGCT 9 cut(s) 14, 251, 343, 449, 758, 812, 868, 880, 893
Alw21I GWGCWC 1 cut(s) 821
Alw26I GTCTC 1 cut(s) 987
Alw44I GTGCAC 1 cut(s) 817
AlwNI CAGNNNCTG 2 cut(s) 14, 923
AoxI GGCC 2 cut(s) 398, 677
ApaLI GTGCAC 1 cut(s) 817
ApeKI GCWGC 7 cut(s) 11, 242, 340, 533, 536, 539, 890
ApoI RAATTY 1 cut(s) 255
ArsI GACNNNNNNTTYG 2 cut(s) 869, 901
AseI ATTAAT 1 cut(s) 947
Asp700I GAANNNNTTC 1 cut(s) 505
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 674
AsuII TTCGAA 1 cut(s) 875
BaeGI GKGCMC 2 cut(s) 113, 821
BalI TGGCCA 1 cut(s) 679
BanII GRGCYC 2 cut(s) 8, 906
BarI GAAGNNNNNNTAC 2 cut(s) 1038, 1070
Bbv12I GWGCWC 1 cut(s) 821
BbvI GCAGC 7 cut(s) 23, 229, 352, 520, 523, 526, 902
BccI CCATC 3 cut(s) 40, 152, 596
BciT130I CCWGG 3 cut(s) 488, 702, 1096
BclI TGATCA 1 cut(s) 826
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 987
BfaI CTAG 2 cut(s) 120, 428
BfmI CTRYAG 1 cut(s) 246
BfrI CTTAAG 1 cut(s) 317
BisI GCNGC 7 cut(s) 12, 243, 341, 534, 537, 540, 891
BlsI GCNGC 7 cut(s) 13, 244, 342, 535, 538, 541, 892
Bme1390I CCNGG 4 cut(s) 148, 488, 702, 1096
BmeRI GACNNNNNGTC 1 cut(s) 358
BmgBI CACGTC 1 cut(s) 752
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 4 cut(s) 148, 488, 702, 1096
BmsI GCATC 8 cut(s) 43, 133, 180, 301, 504, 586, 829, 1087
Bpu14I TTCGAA 1 cut(s) 875
BpuEI CTTGAG 2 cut(s) 567, 890
BpuMI CCSGG 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 731
BsaJI CCNNGG 2 cut(s) 486, 487
Bse1I ACTGG 3 cut(s) 263, 411, 1062
Bse3DI GCAATG 1 cut(s) 76
BseBI CCWGG 3 cut(s) 488, 702, 1096
BseDI CCNNGG 2 cut(s) 486, 487
BseGI GGATG 5 cut(s) 51, 58, 577, 937, 1066
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 2 cut(s) 358, 855
BseNI ACTGG 3 cut(s) 263, 411, 1062
BseRI GAGGAG 1 cut(s) 1038
BseSI GKGCMC 2 cut(s) 113, 821
BseXI GCAGC 7 cut(s) 23, 229, 352, 520, 523, 526, 902
BseYI CCCAGC 1 cut(s) 7
BshFI GGCC 2 cut(s) 400, 679
BsiHKAI GWGCWC 1 cut(s) 821
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 2 cut(s) 99, 762
BsmAI GTCTC 1 cut(s) 987
BsmFI GGGAC 2 cut(s) 99, 762
BsmI GAATGC 1 cut(s) 1099
BsnI GGCC 2 cut(s) 400, 679
Bsp119I TTCGAA 1 cut(s) 875
Bsp1286I GDGCHC 4 cut(s) 8, 113, 821, 906
Bsp1407I TGTACA 1 cut(s) 91
Bsp143I GATC 1 cut(s) 826
BspACI CCGC 2 cut(s) 542, 1015
BspANI GGCC 2 cut(s) 400, 679
BspCNI CTCAG 2 cut(s) 357, 856
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 1 cut(s) 484
BspQI GCTCTTC 1 cut(s) 330
BspT104I TTCGAA 1 cut(s) 875
BspTI CTTAAG 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 76
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 3 cut(s) 263, 411, 1062
BssECI CCNNGG 2 cut(s) 486, 487
BssMI GATC 1 cut(s) 826
Bst2UI CCWGG 3 cut(s) 488, 702, 1096
Bst4CI ACNGT 3 cut(s) 505, 658, 721
Bst6I CTCTTC 1 cut(s) 330
BstAFI CTTAAG 1 cut(s) 317
BstAUI TGTACA 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 731
BstBI TTCGAA 1 cut(s) 875
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 3 cut(s) 344, 864, 993
BstF5I GGATG 5 cut(s) 51, 58, 577, 937, 1066
BstKTI GATC 1 cut(s) 829
BstMAI GTCTC 1 cut(s) 987
BstMBI GATC 1 cut(s) 826
BstMWI GCNNNNNNNGC 5 cut(s) 20, 248, 539, 545, 1096
BstNI CCWGG 3 cut(s) 488, 702, 1096
BstNSI RCATGY 3 cut(s) 92, 497, 1055
BstSCI CCNGG 4 cut(s) 146, 486, 700, 1094
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 2 cut(s) 113, 821
BstV1I GCAGC 7 cut(s) 23, 229, 352, 520, 523, 526, 902
BsuRI GGCC 2 cut(s) 400, 679
BtrI CACGTC 1 cut(s) 752
BtsCI GGATG 5 cut(s) 51, 58, 577, 937, 1066
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 495
CaiI CAGNNNCTG 2 cut(s) 14, 923
CciI TCATGA 1 cut(s) 520
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 1 cut(s) 506
Csp6I GTAC 5 cut(s) 92, 404, 654, 938, 1055
CviAII CATG 8 cut(s) 89, 95, 494, 521, 745, 836, 965, 1052
CviQI GTAC 5 cut(s) 92, 404, 654, 938, 1055
DdeI CTNAG 3 cut(s) 344, 864, 993
DpnI GATC 1 cut(s) 828
DpnII GATC 1 cut(s) 826
DriI GACNNNNNGTC 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 677
Eam1104I CTCTTC 1 cut(s) 330
Eam1105I GACNNNNNGTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 330
Eco24I GRGCYC 2 cut(s) 8, 906
Eco32I GATATC 1 cut(s) 669
Eco57I CTGAAG 2 cut(s) 902, 1065
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 3 cut(s) 486, 700, 1094
EcoRV GATATC 1 cut(s) 669
EcoT38I GRGCYC 2 cut(s) 8, 906
FaeI CATG 8 cut(s) 92, 98, 497, 524, 748, 839, 968, 1055
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 2 cut(s) 99, 762
FatI CATG 8 cut(s) 88, 94, 493, 520, 744, 835, 964, 1051
FbaI TGATCA 1 cut(s) 826
FblI GTMKAC 1 cut(s) 224
Fnu4HI GCNGC 7 cut(s) 12, 243, 341, 534, 537, 540, 891
FokI GGATG 5 cut(s) 58, 65, 564, 944, 1073
FriOI GRGCYC 2 cut(s) 8, 906
Fsp4HI GCNGC 7 cut(s) 12, 243, 341, 534, 537, 540, 891
FspBI CTAG 2 cut(s) 120, 428
GluI GCNGC 7 cut(s) 12, 243, 341, 534, 537, 540, 891
GsaI CCCAGC 1 cut(s) 11
HaeIII GGCC 2 cut(s) 400, 679
HapII CCGG 1 cut(s) 147
HgaI GACGC 1 cut(s) 506
Hin1II CATG 8 cut(s) 92, 98, 497, 524, 748, 839, 968, 1055
HinfI GANTC 3 cut(s) 382, 629, 860
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 2 cut(s) 225, 819
Hpy188I TCNGA 2 cut(s) 347, 865
Hpy188III TCNNGA 5 cut(s) 308, 521, 584, 907, 929
Hpy8I GTNNAC 2 cut(s) 225, 819
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 3 cut(s) 505, 658, 721
HpyCH4IV ACGT 3 cut(s) 68, 730, 751
HpyCH4V TGCA 7 cut(s) 277, 612, 686, 734, 819, 842, 848
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 248, 539, 545, 1096
HpyF3I CTNAG 3 cut(s) 344, 864, 993
HpySE526I ACGT 3 cut(s) 68, 730, 751
Hsp92II CATG 8 cut(s) 92, 98, 497, 524, 748, 839, 968, 1055
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 1 cut(s) 826
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 1 cut(s) 956
Lsp1109I GCAGC 7 cut(s) 23, 229, 352, 520, 523, 526, 902
LweI GCATC 8 cut(s) 43, 133, 180, 301, 504, 586, 829, 1087
MaeI CTAG 2 cut(s) 120, 428
MaeII ACGT 3 cut(s) 68, 730, 751
MaeIII GTNAC 5 cut(s) 298, 469, 617, 709, 1034
MalI GATC 1 cut(s) 828
MboI GATC 1 cut(s) 826
MboII GAAGA 3 cut(s) 215, 347, 1058
MfeI CAATTG 2 cut(s) 735, 822
MhlI GDGCHC 4 cut(s) 8, 113, 821, 906
MlsI TGGCCA 1 cut(s) 679
MluCI AATT 5 cut(s) 255, 303, 735, 770, 822
MluNI TGGCCA 1 cut(s) 679
MnlI CCTC 9 cut(s) 12, 43, 100, 121, 435, 473, 591, 1016, 1019
Mox20I TGGCCA 1 cut(s) 679
MroXI GAANNNNTTC 1 cut(s) 505
MscI TGGCCA 1 cut(s) 679
MseI TTAA 4 cut(s) 318, 438, 947, 989
MslI CAYNNNNRTG 3 cut(s) 93, 179, 834
Msp20I TGGCCA 1 cut(s) 679
MspA1I CMGCKG 2 cut(s) 14, 1017
MspCI CTTAAG 1 cut(s) 317
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 4 cut(s) 148, 488, 702, 1096
MunI CAATTG 2 cut(s) 735, 822
Mva1269I GAATGC 1 cut(s) 1099
MvaI CCWGG 3 cut(s) 488, 702, 1096
MwoI GCNNNNNNNGC 5 cut(s) 20, 248, 539, 545, 1096
NciI CCSGG 1 cut(s) 148
NdeII GATC 1 cut(s) 826
NlaIII CATG 8 cut(s) 92, 98, 497, 524, 748, 839, 968, 1055
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 2 cut(s) 298, 1034
NspI RCATGY 3 cut(s) 92, 497, 1055
NspV TTCGAA 1 cut(s) 875
PaeI GCATGC 1 cut(s) 497
PagI TCATGA 1 cut(s) 520
PasI CCCWGGG 1 cut(s) 487
PciI ACATGT 2 cut(s) 88, 1051
PciSI GCTCTTC 1 cut(s) 330
PcsI WCGNNNNNNNCGW 1 cut(s) 654
PctI GAATGC 1 cut(s) 1099
PdmI GAANNNNTTC 1 cut(s) 505
PfeI GAWTC 3 cut(s) 382, 629, 860
PfoI TCCNGGA 1 cut(s) 700
PkrI GCNGC 7 cut(s) 13, 244, 342, 535, 538, 541, 892
Ppu21I YACGTR 1 cut(s) 731
PscI ACATGT 2 cut(s) 88, 1051
PshBI ATTAAT 1 cut(s) 947
Psp6I CCWGG 3 cut(s) 486, 700, 1094
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 3 cut(s) 486, 700, 1094
PspN4I GGNNCC 1 cut(s) 484
PspPI GGNCC 1 cut(s) 398
PstNI CAGNNNCTG 2 cut(s) 14, 923
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 5 cut(s) 93, 405, 655, 939, 1056
RsaNI GTAC 5 cut(s) 92, 404, 654, 938, 1055
RseI CAYNNNNRTG 3 cut(s) 93, 179, 834
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 4 cut(s) 318, 438, 947, 989
SatI GCNGC 7 cut(s) 12, 243, 341, 534, 537, 540, 891
Sau3AI GATC 1 cut(s) 826
Sau96I GGNCC 1 cut(s) 398
ScrFI CCNGG 4 cut(s) 148, 488, 702, 1096
SduI GDGCHC 4 cut(s) 8, 113, 821, 906
SfaNI GCATC 8 cut(s) 43, 133, 180, 301, 504, 586, 829, 1087
SfcI CTRYAG 1 cut(s) 246
SfuI TTCGAA 1 cut(s) 875
SmiMI CAYNNNNRTG 3 cut(s) 93, 179, 834
SmlI CTYRAG 3 cut(s) 317, 582, 905
SmoI CTYRAG 3 cut(s) 317, 582, 905
SphI GCATGC 1 cut(s) 497
Sse9I AATT 5 cut(s) 255, 303, 735, 770, 822
SsiI CCGC 2 cut(s) 542, 1015
SspMI CTAG 2 cut(s) 120, 428
StyD4I CCNGG 4 cut(s) 146, 486, 700, 1094
TaaI ACNGT 3 cut(s) 505, 658, 721
TaiI ACGT 3 cut(s) 71, 733, 754
TaqI TCGA 4 cut(s) 100, 671, 875, 1021
TasI AATT 5 cut(s) 255, 303, 735, 770, 822
TatI WGTACW 3 cut(s) 91, 403, 1054
TfiI GAWTC 3 cut(s) 382, 629, 860
Tru1I TTAA 4 cut(s) 318, 438, 947, 989
Tru9I TTAA 4 cut(s) 318, 438, 947, 989
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 2 cut(s) 298, 1034
TseI GCWGC 7 cut(s) 11, 242, 340, 533, 536, 539, 890
Tsp45I GTSAC 2 cut(s) 298, 1034
TspDTI ATGAA 5 cut(s) 65, 216, 220, 948, 1092
TspRI CASTG 1 cut(s) 279
Vha464I CTTAAG 1 cut(s) 317
VneI GTGCAC 1 cut(s) 817
VspI ATTAAT 1 cut(s) 947
XapI RAATTY 1 cut(s) 255
XceI RCATGY 3 cut(s) 92, 497, 1055
XcmI CCANNNNNNNNNTGG 2 cut(s) 363, 494
XmiI GTMKAC 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 505
XspI CTAG 2 cut(s) 120, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.