Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

15704259 .. 15704865

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30157

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGACGTGAAGCTGTTGTATATGAATTATCTAACCGATTGTATCAAATATGTGATAGGCATTCAGTTTCGTGCACAATTGATCGTAAGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGACTTTGAAGCTGAAGTCTGCGGCTTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACTAAGGTGGGTATGCTTTTTGTCCGCTGTCGAGGAGGCATAAGTCACTCCCCTGAAGAACATGTATTGGATGATGATGTTTGGCAATCCTGGCATTCATTGAGACTGAGCTCTAGATTGGAACATTTTTTCAGACATTACTGTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

131

Amino Acids

14.84

Weight (kDa)

6.74

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	146, 271
AcuI	CTGAAG	2 cut(s)	158, 321
AfaI	GTAC	1 cut(s)	195
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	4 cut(s)	14, 124, 136, 357
AluI	AGCT	4 cut(s)	14, 124, 136, 357
Alw21I	GWGCWC	2 cut(s)	77, 359
Alw26I	GTCTC	2 cut(s)	243, 343
Alw44I	GTGCAC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	179
ApaLI	GTGCAC	1 cut(s)	73
AseI	ATTAAT	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	77
BanII	GRGCYC	2 cut(s)	162, 359
Bbv12I	GWGCWC	2 cut(s)	77, 359
BciT130I	CCWGG	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	243, 343
BfaI	CTAG	1 cut(s)	360
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	337
BmgBI	CACGTC	1 cut(s)	8
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	85, 214
BpuEI	CTTGAG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	337
BseGI	GGATG	2 cut(s)	193, 322
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	111, 344
BseRI	GAGGAG	1 cut(s)	294
BseSI	GKGCMC	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	77, 359
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	243, 343
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	2 cut(s)	61, 340
Bsp1286I	GDGCHC	3 cut(s)	77, 162, 359
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	2 cut(s)	146, 271
BspCNI	CTCAG	2 cut(s)	112, 345
BsrDI	GCAATG	1 cut(s)	234
BssMI	GATC	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	389
BstDEI	CTNAG	3 cut(s)	120, 249, 353
BstF5I	GGATG	2 cut(s)	193, 322
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	2 cut(s)	243, 343
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNI	CCWGG	1 cut(s)	337
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	335
BstSLI	GKGCMC	1 cut(s)	77
BtrI	CACGTC	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	193, 322
CaiI	CAGNNNCTG	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	3 cut(s)	92, 221, 308
CviJI	RGCY	7 cut(s)	14, 124, 136, 149, 160, 233, 357
CviKI_1	RGCY	7 cut(s)	14, 124, 136, 149, 160, 233, 357
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	120, 249, 353
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	357
Eco24I	GRGCYC	2 cut(s)	162, 359
Eco53kI	GAGCTC	1 cut(s)	357
Eco57I	CTGAAG	2 cut(s)	158, 321
EcoICRI	GAGCTC	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	335
EcoT38I	GRGCYC	2 cut(s)	162, 359
FaeI	CATG	3 cut(s)	95, 224, 311
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	91, 220, 307
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	2 cut(s)	200, 329
FriOI	GRGCYC	2 cut(s)	162, 359
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	95, 224, 311
HinfI	GANTC	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	2 cut(s)	121, 380
Hpy188III	TCNNGA	3 cut(s)	163, 185, 360
Hpy8I	GTNNAC	1 cut(s)	75
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	4 cut(s)	75, 98, 104, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	3 cut(s)	120, 249, 353
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	3 cut(s)	95, 224, 311
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	7 cut(s)	159, 170, 201, 210, 312, 322, 349
LweI	GCATC	2 cut(s)	85, 214
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	314
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	3 cut(s)	77, 162, 359
MluCI	AATT	2 cut(s)	26, 78
MnlI	CCTC	2 cut(s)	272, 275
MseI	TTAA	2 cut(s)	203, 245
MspA1I	CMGCKG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	337
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	2 cut(s)	61, 340
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	337
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	3 cut(s)	95, 224, 311
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	311
PciI	ACATGT	1 cut(s)	307
PctI	GAATGC	2 cut(s)	61, 340
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	148
PscI	ACATGT	1 cut(s)	307
PshBI	ATTAAT	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PstNI	CAGNNNCTG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	203, 245
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	3 cut(s)	77, 162, 359
SetI	ASST	8 cut(s)	10, 16, 126, 138, 178, 199, 255, 359
SfaNI	GCATC	2 cut(s)	85, 214
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	26, 78
SsiI	CCGC	2 cut(s)	146, 271
SspMI	CTAG	1 cut(s)	360
SstI	GAGCTC	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	389
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	277
TasI	AATT	2 cut(s)	26, 78
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	203, 245
Tru9I	TTAA	2 cut(s)	203, 245
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	39, 204, 333
VneI	GTGCAC	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	203
XbaI	TCTAGA	1 cut(s)	359
XceI	RCATGY	1 cut(s)	311
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.