Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

1294285 .. 1296917

Gene Structure 2633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G000900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGATACTGCAAAAACCACCTGATAAGCTTGAGCTAATTGCATTTAATGATGAAGAAGGAGTAAGGTTTCAGTCTACATTCATAGAAAGTGCTGCTATAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGGTGTGACAATTCAAGATGCTCTTAAGAAAAGCTTCATTGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATGTTAAGATTAACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACAATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGCGTCATGACCCTATGGCTACTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAATATTTTCTGTCTTTTGATGGTCAATGCAAAAGTTACTCATTAGAATCACTTTCAACTTACTCGTGTGTACCGTTGGTGAGATATCGACTTGGCCAAGTGCAAGTAATGTTATTCCAGGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

193

Amino Acids

21.49

Weight (kDa)

6.42

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	74
AciI	CCGC	1 cut(s)	413
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	1 cut(s)	105
AfaI	GTAC	2 cut(s)	273, 525
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	4 cut(s)	158, 185, 260, 510
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	2 cut(s)	354, 570
AluBI	AGCT	6 cut(s)	28, 34, 101, 177, 211, 317
AluI	AGCT	6 cut(s)	28, 34, 101, 177, 211, 317
Alw21I	GWGCWC	1 cut(s)	201
AoxI	GGCC	2 cut(s)	266, 547
ApeKI	GCWGC	4 cut(s)	92, 205, 208, 410
ApoI	RAATTY	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	544
BalI	TGGCCA	1 cut(s)	549
BauI	CACGAG	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	4 cut(s)	79, 217, 220, 397
BccI	CCATC	1 cut(s)	467
BciT130I	CCWGG	2 cut(s)	356, 572
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	96
BfrI	CTTAAG	1 cut(s)	167
BisI	GCNGC	4 cut(s)	93, 206, 209, 411
BlsI	GCNGC	4 cut(s)	94, 207, 210, 412
Bme1390I	CCNGG	2 cut(s)	356, 572
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	2 cut(s)	356, 572
BmsI	GCATC	2 cut(s)	151, 457
BpuEI	CTTGAG	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	354, 355
Bse1I	ACTGG	2 cut(s)	113, 279
BseBI	CCWGG	2 cut(s)	356, 572
BseDI	CCNNGG	2 cut(s)	354, 355
BseGI	GGATG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	226
BseNI	ACTGG	2 cut(s)	113, 279
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	4 cut(s)	79, 217, 220, 397
BshFI	GGCC	2 cut(s)	268, 549
BsiHKAI	GWGCWC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	268, 549
Bsp1286I	GDGCHC	1 cut(s)	201
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	2 cut(s)	268, 549
BspCNI	CTCAG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	352
BspTI	CTTAAG	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	113, 279
BssECI	CCNNGG	2 cut(s)	354, 355
BssSI	CACGAG	1 cut(s)	517
Bst2BI	CACGAG	1 cut(s)	517
Bst2UI	CCWGG	2 cut(s)	356, 572
Bst4CI	ACNGT	2 cut(s)	373, 528
BstAFI	CTTAAG	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	448
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 205, 410, 416
BstNI	CCWGG	2 cut(s)	356, 572
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	354, 570
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	4 cut(s)	79, 217, 220, 397
BsuRI	GGCC	2 cut(s)	268, 549
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	363
CciI	TCATGA	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	266
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	272, 524
CviAII	CATG	3 cut(s)	362, 385, 392
CviQI	GTAC	2 cut(s)	272, 524
DdeI	CTNAG	1 cut(s)	212
DriI	GACNNNNNGTC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	547
Eam1105I	GACNNNNNGTC	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	539
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	354, 570
EcoRV	GATATC	1 cut(s)	539
FaeI	CATG	3 cut(s)	365, 388, 395
FalI	AAGNNNNNCTT	4 cut(s)	150, 182, 161, 193
FatI	CATG	3 cut(s)	361, 384, 391
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	4 cut(s)	93, 206, 209, 411
FokI	GGATG	1 cut(s)	435
Fsp4HI	GCNGC	4 cut(s)	93, 206, 209, 411
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	4 cut(s)	93, 206, 209, 411
HaeIII	GGCC	2 cut(s)	268, 549
HgaI	GACGC	1 cut(s)	377
Hin1II	CATG	3 cut(s)	365, 388, 395
HindIII	AAGCTT	2 cut(s)	26, 175
HinfI	GANTC	1 cut(s)	500
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	2 cut(s)	75, 524
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	2 cut(s)	158, 392
Hpy8I	GTNNAC	2 cut(s)	75, 524
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	2 cut(s)	373, 528
HpyCH4V	TGCA	6 cut(s)	10, 41, 127, 205, 483, 556
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 205, 410, 416
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	365, 388, 395
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	4 cut(s)	79, 217, 220, 397
LweI	GCATC	2 cut(s)	151, 457
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	4 cut(s)	148, 187, 337, 488
MboII	GAAGA	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	3 cut(s)	36, 105, 153
MluNI	TGGCCA	1 cut(s)	549
MnlI	CCTC	4 cut(s)	187, 303, 341, 462
Mox20I	TGGCCA	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	5 cut(s)	45, 168, 246, 252, 306
Msp20I	TGGCCA	1 cut(s)	549
MspCI	CTTAAG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	356, 572
MvaI	CCWGG	2 cut(s)	356, 572
MwoI	GCNNNNNNNGC	4 cut(s)	98, 205, 410, 416
NlaIII	CATG	3 cut(s)	365, 388, 395
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	365
PagI	TCATGA	1 cut(s)	391
PasI	CCCWGGG	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	500
PfoI	TCCNGGA	1 cut(s)	570
PkrI	GCNGC	4 cut(s)	94, 207, 210, 412
Psp6I	CCWGG	2 cut(s)	354, 570
PspGI	CCWGG	2 cut(s)	354, 570
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	2 cut(s)	273, 525
RsaNI	GTAC	2 cut(s)	272, 524
SaqAI	TTAA	5 cut(s)	45, 168, 246, 252, 306
SatI	GCNGC	4 cut(s)	93, 206, 209, 411
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	356, 572
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	2 cut(s)	151, 457
SfcI	CTRYAG	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	29, 167
SmoI	CTYRAG	2 cut(s)	29, 167
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	3 cut(s)	36, 105, 153
SsiI	CCGC	1 cut(s)	413
SspI	AATATT	1 cut(s)	458
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	354, 570
TaaI	ACNGT	2 cut(s)	373, 528
TaqI	TCGA	1 cut(s)	541
TasI	AATT	3 cut(s)	36, 105, 153
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	5 cut(s)	45, 168, 246, 252, 306
Tru9I	TTAA	5 cut(s)	45, 168, 246, 252, 306
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	4 cut(s)	92, 205, 208, 410
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	66, 70, 169
TspRI	CASTG	1 cut(s)	129
Vha464I	CTTAAG	1 cut(s)	167
XapI	RAATTY	1 cut(s)	105
XceI	RCATGY	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	2 cut(s)	231, 362
XmiI	GTMKAC	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.