Rh1BG007400

Allantoate

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
876382 .. 883236
6855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG007400.1

Sequence Viewer

Length: 1140 bp
ATGACAGTTGTTACACGTGTCTCCCAGAGAACCCATTCCGCCATTAGTCCCACCTCCGTTTTGGCTCTGGCTTGCCCTTTCTTGCTTCTGGTCTCTTCATCCATCACTCCCTGTCTTGGATTTTCTGGTGTTGGAGAAGAAGATGAGAGAAACAGAGGAGGGGCTTGTTTTGGAAAGGTAAGTGATGGTGATGGTTATCTTGAGAGGATATTCATGAGCCCAGCAGCTGTGAGGGCTGGAAATCTTATCCGCGAATGGATGGAGGATACTGGTTTGAGAACGTGGGTTGATTGCTTGGGAAATGTACATGGTCGAGTTGAGGGTACAAATGCTAGTGCTGAGGTTCTAATACTTGGTTCTCATTTGGATACTGTTGTTTTGAGTATCGATGGAAAATTGGGAGAACTAAAGCGGCCGGTTGAGGTAATAGCATTTAGTGATGAAGAAGGAGTAAGGTTTCAGTCTACATTCATAGGAAGTGCTGCTATAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGGTGTGACAATTCAAGATGCTCTTAAGAAAAACTCCATTGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGATCCAAAGTCAGTTTGGGGTTATGTTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGATGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACAATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGCGTCATGACCCTATGGCTGCTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGATGGTCAATGCAAAAGTTACTCATTAGAATCACTTTCAACTTCACTCGTTTGTACCATTGGTGAGATATTGACTTGGCCAAGTGCAAGTAATGTTATTCCAGGACAGGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGACGTGAAGCTGTTGTATGTGAATTATCTAACCGATTGTATCAAATATGTGATAGGCGTTCAGTTTCGTGCATAATTGATCGTAGGTGTGGAACTTTTCATGTCCTAGTCAATCATTTGCAAGTAGCTTGA

Protein Analysis

379

Amino Acids

41.04

Weight (kDa)

5.42

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
M20_dimer PF07687 237 - 349 4.5e-07 Peptidase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20070 AT4G20070
fragaria_vesca FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica MD10G1228200.v1.1
prunus_persica Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis pycom10g19170
rosa_chinensis RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 464
AccII CGCG 1 cut(s) 252
AciI CCGC 4 cut(s) 39, 250, 412, 803
AclWI GGATC 1 cut(s) 605
AcoI YGGCCR 2 cut(s) 413, 938
AcsI RAATTY 1 cut(s) 495
AcvI CACGTG 1 cut(s) 17
AfaI GTAC 4 cut(s) 306, 325, 663, 916
AfiI CCNNNNNNNGG 1 cut(s) 116
AflII CTTAAG 1 cut(s) 557
AflIII ACRYGT 2 cut(s) 14, 16
AgsI TTSAA 4 cut(s) 548, 575, 650, 900
AjiI CACGTC 1 cut(s) 1013
AjnI CCWGG 2 cut(s) 744, 961
AluBI AGCT 6 cut(s) 227, 491, 601, 707, 1019, 1136
AluI AGCT 6 cut(s) 227, 491, 601, 707, 1019, 1136
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 2 cut(s) 25, 97
AlwI GGATC 1 cut(s) 605
AlwNI CAGNNNCTG 1 cut(s) 227
AoxI GGCC 3 cut(s) 413, 656, 938
ApeKI GCWGC 7 cut(s) 224, 482, 595, 598, 794, 797, 800
ApoI RAATTY 1 cut(s) 495
Asp700I GAANNNNTTC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 656
AsuHPI GGTGA 2 cut(s) 200, 935
BaeI ACNNNNGTAYC 2 cut(s) 360, 393
BalI TGGCCA 1 cut(s) 940
BanII GRGCYC 1 cut(s) 221
BbrPI CACGTG 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 591
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 7 cut(s) 236, 469, 607, 610, 781, 784, 787
BccI CCATC 6 cut(s) 110, 179, 185, 253, 383, 857
BciT130I CCWGG 2 cut(s) 746, 963
BciVI GTATCC 2 cut(s) 259, 361
BcoDI GTCTC 2 cut(s) 25, 97
BfaI CTAG 3 cut(s) 333, 686, 1115
BfmI CTRYAG 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 557
BfuI GTATCC 2 cut(s) 259, 361
BisI GCNGC 8 cut(s) 225, 413, 483, 596, 599, 795, 798, 801
BlsI GCNGC 8 cut(s) 226, 414, 484, 597, 600, 796, 799, 802
Bme1390I CCNGG 2 cut(s) 746, 963
BmgBI CACGTC 1 cut(s) 1013
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 1 cut(s) 742
BmrFI CCNGG 2 cut(s) 746, 963
BmsI GCATC 2 cut(s) 541, 847
Bpu10I CCTNAGC 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 221, 828
Bsa29I ATCGAT 1 cut(s) 387
BsaAI YACGTR 2 cut(s) 17, 992
BsaBI GATNNNNATC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 744, 745
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 3 cut(s) 274, 503, 669
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 2 cut(s) 746, 963
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 744, 745
BseGI GGATG 3 cut(s) 98, 264, 838
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMII CTCAG 2 cut(s) 330, 616
BseNI ACTGG 3 cut(s) 274, 503, 669
BseRI GAGGAG 2 cut(s) 171, 599
BseX3I CGGCCG 1 cut(s) 413
BseXI GCAGC 7 cut(s) 236, 469, 607, 610, 781, 784, 787
BseYI CCCAGC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 416
BshFI GGCC 3 cut(s) 415, 658, 940
BshVI ATCGAT 1 cut(s) 387
BsiEI CGRYCG 1 cut(s) 416
BsiHKAI GWGCWC 1 cut(s) 591
BsiSI CCGG 1 cut(s) 416
BslFI GGGAC 2 cut(s) 33, 1023
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 2 cut(s) 25, 97
BsmFI GGGAC 2 cut(s) 33, 1023
BsnI GGCC 3 cut(s) 415, 658, 940
Bso31I GGTCTC 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 221, 591
Bsp1407I TGTACA 1 cut(s) 304
Bsp143I GATC 2 cut(s) 610, 1087
BspACI CCGC 4 cut(s) 39, 250, 412, 803
BspANI GGCC 3 cut(s) 415, 658, 940
BspCNI CTCAG 2 cut(s) 331, 615
BspDI ATCGAT 1 cut(s) 387
BspFNI CGCG 1 cut(s) 252
BspHI TCATGA 2 cut(s) 213, 781
BspLI GGNNCC 1 cut(s) 742
BspPI GGATC 1 cut(s) 605
BspTI CTTAAG 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 415
BsrGI TGTACA 1 cut(s) 304
BsrI ACTGG 3 cut(s) 274, 503, 669
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 2 cut(s) 744, 745
BssMI GATC 2 cut(s) 610, 1087
Bst2UI CCWGG 2 cut(s) 746, 963
Bst4CI ACNGT 4 cut(s) 7, 373, 763, 982
Bst6I CTCTTC 1 cut(s) 100
BstAFI CTTAAG 1 cut(s) 557
BstAUI TGTACA 1 cut(s) 304
BstBAI YACGTR 2 cut(s) 17, 992
BstC8I GCNNGC 2 cut(s) 73, 753
BstDEI CTNAG 2 cut(s) 339, 602
BstF5I GGATG 3 cut(s) 98, 264, 838
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 2 cut(s) 613, 1090
BstMAI GTCTC 2 cut(s) 25, 97
BstMBI GATC 2 cut(s) 610, 1087
BstMCI CGRYCG 1 cut(s) 416
BstMWI GCNNNNNNNGC 5 cut(s) 233, 488, 595, 800, 806
BstNI CCWGG 2 cut(s) 746, 963
BstNSI RCATGY 1 cut(s) 755
BstSCI CCNGG 2 cut(s) 744, 961
BstSFI CTRYAG 1 cut(s) 486
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 7 cut(s) 236, 469, 607, 610, 781, 784, 787
BstZI CGGCCG 1 cut(s) 413
Bsu15I ATCGAT 1 cut(s) 387
BsuI GTATCC 2 cut(s) 259, 361
BsuRI GGCC 3 cut(s) 415, 658, 940
BsuTUI ATCGAT 1 cut(s) 387
BtrI CACGTC 1 cut(s) 1013
BtsCI GGATG 3 cut(s) 98, 264, 838
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 1 cut(s) 512
Cac8I GCNNGC 2 cut(s) 73, 753
CaiI CAGNNNCTG 1 cut(s) 227
CciI TCATGA 2 cut(s) 213, 781
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 656
ClaI ATCGAT 1 cut(s) 387
CseI GACGC 1 cut(s) 767
Csp6I GTAC 4 cut(s) 305, 324, 662, 915
CviAII CATG 7 cut(s) 214, 308, 752, 775, 782, 1006, 1109
CviQI GTAC 4 cut(s) 305, 324, 662, 915
DdeI CTNAG 2 cut(s) 339, 602
DpnI GATC 2 cut(s) 612, 1089
DpnII GATC 2 cut(s) 610, 1087
EaeI YGGCCR 2 cut(s) 413, 938
EagI CGGCCG 1 cut(s) 413
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
EciI GGCGGA 1 cut(s) 28
EclXI CGGCCG 1 cut(s) 413
Eco24I GRGCYC 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 97
Eco52I CGGCCG 1 cut(s) 413
Eco72I CACGTG 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 656
EcoRII CCWGG 2 cut(s) 744, 961
EcoT38I GRGCYC 1 cut(s) 221
FaeI CATG 7 cut(s) 217, 311, 755, 778, 785, 1009, 1112
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 2 cut(s) 33, 1023
FatI CATG 7 cut(s) 213, 307, 751, 774, 781, 1005, 1108
FblI GTMKAC 1 cut(s) 464
Fnu4HI GCNGC 8 cut(s) 225, 413, 483, 596, 599, 795, 798, 801
FokI GGATG 3 cut(s) 85, 271, 825
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 8 cut(s) 225, 413, 483, 596, 599, 795, 798, 801
FspBI CTAG 3 cut(s) 333, 686, 1115
GluI GCNGC 8 cut(s) 225, 413, 483, 596, 599, 795, 798, 801
GsaI CCCAGC 1 cut(s) 224
HaeIII GGCC 3 cut(s) 415, 658, 940
HapII CCGG 1 cut(s) 416
HgaI GACGC 1 cut(s) 767
Hin1II CATG 7 cut(s) 217, 311, 755, 778, 785, 1009, 1112
HinfI GANTC 2 cut(s) 640, 890
HpaII CCGG 1 cut(s) 416
HphI GGTGA 2 cut(s) 200, 935
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 1 cut(s) 605
Hpy188III TCNNGA 5 cut(s) 200, 214, 548, 782, 845
Hpy8I GTNNAC 1 cut(s) 465
HpyAV CCTTC 1 cut(s) 440
HpyCH4III ACNGT 4 cut(s) 7, 373, 763, 982
HpyCH4IV ACGT 4 cut(s) 16, 281, 991, 1012
HpyCH4V TGCA 7 cut(s) 517, 595, 873, 947, 995, 1080, 1129
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 488, 595, 800, 806
HpyF3I CTNAG 2 cut(s) 339, 602
HpySE526I ACGT 4 cut(s) 16, 281, 991, 1012
Hsp92II CATG 7 cut(s) 217, 311, 755, 778, 785, 1009, 1112
Kzo9I GATC 2 cut(s) 610, 1087
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 7 cut(s) 236, 469, 607, 610, 781, 784, 787
LweI GCATC 2 cut(s) 541, 847
MaeI CTAG 3 cut(s) 333, 686, 1115
MaeII ACGT 4 cut(s) 16, 281, 991, 1012
MaeIII GTNAC 6 cut(s) 10, 538, 577, 727, 878, 970
MalI GATC 2 cut(s) 612, 1089
MboI GATC 2 cut(s) 610, 1087
MboII GAAGA 4 cut(s) 87, 149, 152, 455
MfeI CAATTG 1 cut(s) 996
MhlI GDGCHC 2 cut(s) 221, 591
MlsI TGGCCA 1 cut(s) 940
MluCI AATT 6 cut(s) 395, 495, 543, 996, 1031, 1083
MluNI TGGCCA 1 cut(s) 940
MmeI TCCRAC 1 cut(s) 112
Mox20I TGGCCA 1 cut(s) 940
MroXI GAANNNNTTC 1 cut(s) 34
MscI TGGCCA 1 cut(s) 940
MseI TTAA 2 cut(s) 558, 696
Msp20I TGGCCA 1 cut(s) 940
MspA1I CMGCKG 1 cut(s) 227
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 1 cut(s) 416
MspR9I CCNGG 2 cut(s) 746, 963
MunI CAATTG 1 cut(s) 996
MvaI CCWGG 2 cut(s) 746, 963
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 5 cut(s) 233, 488, 595, 800, 806
NdeII GATC 2 cut(s) 610, 1087
NlaIII CATG 7 cut(s) 217, 311, 755, 778, 785, 1009, 1112
NlaIV GGNNCC 1 cut(s) 742
NmuCI GTSAC 1 cut(s) 538
NspI RCATGY 1 cut(s) 755
PaeI GCATGC 1 cut(s) 755
PagI TCATGA 2 cut(s) 213, 781
PasI CCCWGGG 1 cut(s) 745
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 2 cut(s) 640, 890
PfoI TCCNGGA 1 cut(s) 961
PkrI GCNGC 8 cut(s) 226, 414, 484, 597, 600, 796, 799, 802
PmaCI CACGTG 1 cut(s) 17
PmlI CACGTG 1 cut(s) 17
Ppu21I YACGTR 2 cut(s) 17, 992
Psp6I CCWGG 2 cut(s) 744, 961
PspCI CACGTG 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 2 cut(s) 744, 961
PspN4I GGNNCC 1 cut(s) 742
PspPI GGNCC 1 cut(s) 656
PstNI CAGNNNCTG 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 4 cut(s) 306, 325, 663, 916
RsaNI GTAC 4 cut(s) 305, 324, 662, 915
SaqAI TTAA 2 cut(s) 558, 696
SatI GCNGC 8 cut(s) 225, 413, 483, 596, 599, 795, 798, 801
Sau3AI GATC 2 cut(s) 610, 1087
Sau96I GGNCC 1 cut(s) 656
ScrFI CCNGG 2 cut(s) 746, 963
SduI GDGCHC 2 cut(s) 221, 591
SfaNI GCATC 2 cut(s) 541, 847
SfcI CTRYAG 1 cut(s) 486
SmlI CTYRAG 3 cut(s) 200, 557, 843
SmoI CTYRAG 3 cut(s) 200, 557, 843
SphI GCATGC 1 cut(s) 755
Sse9I AATT 6 cut(s) 395, 495, 543, 996, 1031, 1083
SsiI CCGC 4 cut(s) 39, 250, 412, 803
SspMI CTAG 3 cut(s) 333, 686, 1115
StyD4I CCNGG 2 cut(s) 744, 961
TaaI ACNGT 4 cut(s) 7, 373, 763, 982
TaiI ACGT 4 cut(s) 19, 284, 994, 1015
TaqI TCGA 2 cut(s) 313, 387
TasI AATT 6 cut(s) 395, 495, 543, 996, 1031, 1083
TatI WGTACW 2 cut(s) 304, 661
TauI GCSGC 1 cut(s) 415
TfiI GAWTC 2 cut(s) 640, 890
Tru1I TTAA 2 cut(s) 558, 696
Tru9I TTAA 2 cut(s) 558, 696
TscAI CASTG 1 cut(s) 519
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 7 cut(s) 224, 482, 595, 598, 794, 797, 800
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 5 cut(s) 87, 202, 456, 460, 1097
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 1 cut(s) 519
Vha464I CTTAAG 1 cut(s) 557
XapI RAATTY 1 cut(s) 495
XceI RCATGY 1 cut(s) 755
XcmI CCANNNNNNNNNTGG 3 cut(s) 58, 621, 752
XmiI GTMKAC 1 cut(s) 464
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 3 cut(s) 333, 686, 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.