Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Reverse (-)

23102769 .. 23103074

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGACAGGTTCTGTTCAGGATGAAGTACCTATATTAATTAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACCAAGGTGGGTATGCTTTTTGTCCGCTGTCGACGAGGCTTAAGTCACTCCCCTGAAGAACATGTATTGGCTAATGATGTTAGGGCATCTGGTCTGACAATCCTGCCATTCATAGAGACTCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

68

Amino Acids

7.32

Weight (kDa)

6.0

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	109
AciI	CCGC	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	27
AflII	CTTAAG	1 cut(s)	118
AflIII	ACRYGT	1 cut(s)	139
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	75, 188
AlwNI	CAGNNNCTG	1 cut(s)	11
AseI	ATTAAT	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	75, 188
BfaI	CTAG	1 cut(s)	205
BfrI	CTTAAG	1 cut(s)	118
BmsI	GCATC	2 cut(s)	46, 173
BsaJI	CCNNGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	25
BseMI	GCAATG	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	75, 188
BspACI	CCGC	1 cut(s)	103
BspTI	CTTAAG	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	81
BstAFI	CTTAAG	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	25
BstMAI	GTCTC	2 cut(s)	75, 188
BstNSI	RCATGY	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	25
CaiI	CAGNNNCTG	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	2 cut(s)	53, 140
CviJI	RGCY	4 cut(s)	65, 117, 149, 202
CviKI_1	RGCY	4 cut(s)	65, 117, 149, 202
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	2 cut(s)	56, 143
FaiI	YATR	5 cut(s)	32, 54, 92, 141, 191
FatI	CATG	2 cut(s)	52, 139
FblI	GTMKAC	1 cut(s)	109
FokI	GGATG	1 cut(s)	32
FspBI	CTAG	1 cut(s)	205
Hin1II	CATG	2 cut(s)	56, 143
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HinfI	GANTC	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	56, 143
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	5 cut(s)	2, 33, 144, 153, 194
LweI	GCATC	2 cut(s)	46, 173
MaeI	CTAG	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	122
MboII	GAAGA	1 cut(s)	146
MluCI	AATT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	1 cut(s)	107
MseI	TTAA	3 cut(s)	35, 77, 119
MspA1I	CMGCKG	1 cut(s)	105
MspCI	CTTAAG	1 cut(s)	118
NlaIII	CATG	2 cut(s)	56, 143
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	143
PciI	ACATGT	1 cut(s)	139
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PscI	ACATGT	1 cut(s)	139
PshBI	ATTAAT	1 cut(s)	35
PstNI	CAGNNNCTG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	35, 77, 119
SchI	GAGTC	1 cut(s)	190
SetI	ASST	4 cut(s)	10, 31, 87, 204
SfaNI	GCATC	2 cut(s)	46, 173
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	1 cut(s)	103
SspMI	CTAG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	81
TaqI	TCGA	1 cut(s)	109
TasI	AATT	1 cut(s)	36
Tru1I	TTAA	3 cut(s)	35, 77, 119
Tru9I	TTAA	3 cut(s)	35, 77, 119
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	36, 178
Vha464I	CTTAAG	1 cut(s)	118
VspI	ATTAAT	1 cut(s)	35
XceI	RCATGY	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.