Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004180.1

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Reverse (-)

156289 .. 161626

Gene Structure 5338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004180.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgccaaagagaagggaaacccgaatgccaaaaagctctgaattgatacttcgggtattggcgaagaccgagtcatgtatgaaatgtaagctccaaggccgagctgaaccaaacccagaacagccacagttctgctcagactatacatgttcttggccatcacttcaaggactgttctggtctcgctgcccaaatcagagaggtctcgctccacagtcgtctttgacagcaaacgtgaaagttagtcaagggggagatcaattggagcaagctgctgaggcccatgatcctgcaaaaccacctgataagcttgaggtaatagcatttagtgatgaagaaggagtaaggtttcagtctaaattcataggaagtgctgctatagctggaattttaccatccttgttcagtggtgtgacaattcaagatactcttaagaaaaactccattgaagttacagaggagcacttgcagcagctcagatatgacccaaagtcagtttggggttatgttaagattcacattgaacaagggcctgtactggaatgggttggttttcctctaggagttgttaaaggcatagctggacagacaagactaaaggtaacattcacagtagatttacgtgcaattgatgacatgggacgtgaagctgttgtatgtgaattatctaaccgattgtatcaaatatgtgataggcgttcagtttcgtgcacaattgatcagaagcatgatgcaaatgcagtcatttgcgattctgagctgacttcgaagctgacgtcagcaacttatcttgggctcaagagaatgacaggttctgttcaggatgaagtacctgtattaatgagtggagcaggacatgatgcaatggctctgtctcatttaactaaggtgggtatgctttttgtccgctgtcgaggaggcatgagtcacttccctgaagaacttgtattggatgatgatgtttgggcatctggtttggcaatcctggaattcatagactcagctctagattggaacatttttttcgacattactgtatatataggagaaatctcaataatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

354

Amino Acids

39.18

Weight (kDa)

5.49

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	779
AciI	CCGC	1 cut(s)	907
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	3 cut(s)	359, 387, 989
AcuI	CTGAAG	1 cut(s)	957
AcyI	GRCGYC	1 cut(s)	776
AfaI	GTAC	2 cut(s)	537, 831
AflII	CTTAAG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	167, 422, 449, 524
AhdI	GACNNNNNGTC	1 cut(s)	490
AjiI	CACGTC	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	984
Alw21I	GWGCWC	2 cut(s)	465, 713
Alw26I	GTCTC	3 cut(s)	186, 209, 879
Alw44I	GTGCAC	1 cut(s)	709
AlwI	GGATC	1 cut(s)	281
AlwNI	CAGNNNCTG	1 cut(s)	815
AoxI	GGCC	4 cut(s)	97, 155, 279, 530
ApaLI	GTGCAC	1 cut(s)	709
ApeKI	GCWGC	5 cut(s)	186, 272, 374, 469, 472
ApoI	RAATTY	3 cut(s)	359, 387, 989
ArsI	GACNNNNNNTTYG	4 cut(s)	56, 88, 761, 793
AseI	ATTAAT	1 cut(s)	839
AspS9I	GGNCC	2 cut(s)	280, 530
AsuII	TTCGAA	1 cut(s)	767
BaeGI	GKGCMC	1 cut(s)	713
BalI	TGGCCA	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	798
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	2 cut(s)	465, 713
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	5 cut(s)	173, 259, 361, 481, 484
BccI	CCATC	2 cut(s)	166, 403
BciT130I	CCWGG	1 cut(s)	986
BclI	TGATCA	1 cut(s)	718
BcoDI	GTCTC	3 cut(s)	186, 209, 879
BfaI	CTAG	3 cut(s)	560, 1007, 1063
BfmI	CTRYAG	1 cut(s)	378
BfrI	CTTAAG	1 cut(s)	431
BisI	GCNGC	5 cut(s)	187, 273, 375, 470, 473
BlsI	GCNGC	5 cut(s)	188, 274, 376, 471, 474
Bme1390I	CCNGG	1 cut(s)	986
BmeRI	GACNNNNNGTC	1 cut(s)	490
BmgBI	CACGTC	1 cut(s)	644
BmgT120I	GGNCC	2 cut(s)	280, 530
BmrFI	CCNGG	1 cut(s)	986
BmsI	GCATC	3 cut(s)	721, 850, 977
BpiI	GAAGAC	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	767
BpuEI	CTTGAG	2 cut(s)	332, 782
BsaAI	YACGTR	1 cut(s)	623
BsaHI	GRCGYC	1 cut(s)	776
BsaI	GGTCTC	2 cut(s)	186, 209
BsaJI	CCNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	870
BseBI	CCWGG	1 cut(s)	986
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	3 cut(s)	395, 829, 958
BseMI	GCAATG	1 cut(s)	870
BseMII	CTCAG	5 cut(s)	150, 267, 490, 747, 1014
BseNI	ACTGG	1 cut(s)	543
BseRI	GAGGAG	2 cut(s)	473, 930
BseSI	GKGCMC	1 cut(s)	713
BseXI	GCAGC	5 cut(s)	173, 259, 361, 481, 484
BshFI	GGCC	4 cut(s)	99, 157, 281, 532
BsiHKAI	GWGCWC	2 cut(s)	465, 713
BslFI	GGGAC	1 cut(s)	654
BsmAI	GTCTC	3 cut(s)	186, 209, 879
BsmFI	GGGAC	1 cut(s)	654
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	4 cut(s)	99, 157, 281, 532
Bso31I	GGTCTC	2 cut(s)	186, 209
Bsp119I	TTCGAA	1 cut(s)	767
Bsp1286I	GDGCHC	3 cut(s)	465, 713, 798
Bsp143I	GATC	3 cut(s)	256, 286, 718
BspACI	CCGC	1 cut(s)	907
BspANI	GGCC	4 cut(s)	99, 157, 281, 532
BspCNI	CTCAG	5 cut(s)	149, 268, 489, 748, 1013
BspPI	GGATC	1 cut(s)	281
BspT104I	TTCGAA	1 cut(s)	767
BspTI	CTTAAG	1 cut(s)	431
BspTNI	GGTCTC	2 cut(s)	186, 209
BsrDI	GCAATG	1 cut(s)	870
BsrI	ACTGG	1 cut(s)	543
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	3 cut(s)	256, 286, 718
BssNI	GRCGYC	1 cut(s)	776
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	986
Bst4CI	ACNGT	5 cut(s)	129, 174, 216, 613, 1036
BstACI	GRCGYC	1 cut(s)	776
BstAFI	CTTAAG	1 cut(s)	431
BstBAI	YACGTR	1 cut(s)	623
BstBI	TTCGAA	1 cut(s)	767
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	6 cut(s)	136, 276, 476, 756, 885, 1000
BstF5I	GGATG	3 cut(s)	395, 829, 958
BstKTI	GATC	3 cut(s)	259, 289, 721
BstMAI	GTCTC	3 cut(s)	186, 209, 879
BstMBI	GATC	3 cut(s)	256, 286, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 380, 469
BstNI	CCWGG	1 cut(s)	986
BstNSI	RCATGY	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	984
BstSFI	CTRYAG	1 cut(s)	378
BstSLI	GKGCMC	1 cut(s)	713
BstV1I	GCAGC	5 cut(s)	173, 259, 361, 481, 484
BstV2I	GAAGAC	1 cut(s)	71
BsuRI	GGCC	4 cut(s)	99, 157, 281, 532
BtrI	CACGTC	1 cut(s)	644
BtsCI	GGATG	3 cut(s)	395, 829, 958
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	815
Cfr13I	GGNCC	2 cut(s)	280, 530
Csp6I	GTAC	2 cut(s)	536, 830
CviAII	CATG	7 cut(s)	75, 147, 284, 637, 728, 857, 922
CviQI	GTAC	2 cut(s)	536, 830
DdeI	CTNAG	6 cut(s)	136, 276, 476, 756, 885, 1000
DpnI	GATC	3 cut(s)	258, 288, 720
DpnII	GATC	3 cut(s)	256, 286, 718
DriI	GACNNNNNGTC	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	155
Eam1105I	GACNNNNNGTC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	798
Eco31I	GGTCTC	2 cut(s)	186, 209
Eco57I	CTGAAG	1 cut(s)	957
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	989
EcoRII	CCWGG	1 cut(s)	984
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	798
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	7 cut(s)	78, 150, 287, 640, 731, 860, 925
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	7 cut(s)	74, 146, 283, 636, 727, 856, 921
FbaI	TGATCA	1 cut(s)	718
Fnu4HI	GCNGC	5 cut(s)	187, 273, 375, 470, 473
FokI	GGATG	3 cut(s)	382, 836, 965
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	5 cut(s)	187, 273, 375, 470, 473
FspBI	CTAG	3 cut(s)	560, 1007, 1063
GluI	GCNGC	5 cut(s)	187, 273, 375, 470, 473
HaeIII	GGCC	4 cut(s)	99, 157, 281, 532
Hin1I	GRCGYC	1 cut(s)	776
Hin1II	CATG	7 cut(s)	78, 150, 287, 640, 731, 860, 925
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	5 cut(s)	71, 514, 752, 925, 998
Hpy166II	GTNNAC	1 cut(s)	711
Hpy188I	TCNGA	6 cut(s)	40, 139, 198, 479, 723, 757
Hpy188III	TCNNGA	4 cut(s)	422, 799, 821, 1007
Hpy8I	GTNNAC	1 cut(s)	711
HpyAV	CCTTC	2 cut(s)	6, 332
HpyCH4III	ACNGT	5 cut(s)	129, 174, 216, 613, 1036
HpyCH4IV	ACGT	4 cut(s)	234, 622, 643, 776
HpyCH4V	TGCA	7 cut(s)	293, 469, 626, 711, 734, 740, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 380, 469
HpyF3I	CTNAG	6 cut(s)	136, 276, 476, 756, 885, 1000
HpySE526I	ACGT	4 cut(s)	234, 622, 643, 776
Hsp92I	GRCGYC	1 cut(s)	776
Hsp92II	CATG	7 cut(s)	78, 150, 287, 640, 731, 860, 925
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	3 cut(s)	256, 286, 718
LmnI	GCTCC	5 cut(s)	96, 214, 265, 460, 848
Lsp1109I	GCAGC	5 cut(s)	173, 259, 361, 481, 484
LweI	GCATC	3 cut(s)	721, 850, 977
MaeI	CTAG	3 cut(s)	560, 1007, 1063
MaeII	ACGT	4 cut(s)	234, 622, 643, 776
MaeIII	GTNAC	4 cut(s)	412, 451, 601, 926
MalI	GATC	3 cut(s)	258, 288, 720
MboI	GATC	3 cut(s)	256, 286, 718
MboII	GAAGA	3 cut(s)	76, 347, 950
MfeI	CAATTG	3 cut(s)	260, 627, 714
MhlI	GDGCHC	3 cut(s)	465, 713, 798
MlsI	TGGCCA	1 cut(s)	157
MluCI	AATT	9 cut(s)	41, 260, 359, 387, 417, 627, 662, 714, 989
MluNI	TGGCCA	1 cut(s)	157
MlyI	GAGTC	3 cut(s)	80, 934, 992
MnlI	CCTC	7 cut(s)	194, 271, 307, 451, 567, 908, 911
Mox20I	TGGCCA	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	157
MseI	TTAA	5 cut(s)	432, 510, 570, 839, 881
Msp20I	TGGCCA	1 cut(s)	157
MspA1I	CMGCKG	1 cut(s)	909
MspCI	CTTAAG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	986
MunI	CAATTG	3 cut(s)	260, 627, 714
Mva1269I	GAATGC	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	986
MwoI	GCNNNNNNNGC	3 cut(s)	278, 380, 469
NdeII	GATC	3 cut(s)	256, 286, 718
NlaIII	CATG	7 cut(s)	78, 150, 287, 640, 731, 860, 925
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	2 cut(s)	412, 926
NspI	RCATGY	1 cut(s)	150
NspV	TTCGAA	1 cut(s)	767
PciI	ACATGT	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	773
PctI	GAATGC	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	514, 752
PflFI	GACNNNGTC	1 cut(s)	70
PfoI	TCCNGGA	1 cut(s)	984
PkrI	GCNGC	5 cut(s)	188, 274, 376, 471, 474
PleI	GAGTC	3 cut(s)	79, 933, 992
PpsI	GAGTC	3 cut(s)	79, 933, 992
Ppu21I	YACGTR	1 cut(s)	623
PscI	ACATGT	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	839
Psp6I	CCWGG	1 cut(s)	984
PspGI	CCWGG	1 cut(s)	984
PspPI	GGNCC	2 cut(s)	280, 530
PstNI	CAGNNNCTG	1 cut(s)	815
PsyI	GACNNNGTC	1 cut(s)	70
RsaI	GTAC	2 cut(s)	537, 831
RsaNI	GTAC	2 cut(s)	536, 830
SaqAI	TTAA	5 cut(s)	432, 510, 570, 839, 881
SatI	GCNGC	5 cut(s)	187, 273, 375, 470, 473
Sau3AI	GATC	3 cut(s)	256, 286, 718
Sau96I	GGNCC	2 cut(s)	280, 530
SchI	GAGTC	3 cut(s)	80, 934, 992
ScrFI	CCNGG	1 cut(s)	986
SduI	GDGCHC	3 cut(s)	465, 713, 798
SfaNI	GCATC	3 cut(s)	721, 850, 977
SfcI	CTRYAG	1 cut(s)	378
SfuI	TTCGAA	1 cut(s)	767
SmlI	CTYRAG	3 cut(s)	311, 431, 797
SmoI	CTYRAG	3 cut(s)	311, 431, 797
Sse9I	AATT	9 cut(s)	41, 260, 359, 387, 417, 627, 662, 714, 989
SsiI	CCGC	1 cut(s)	907
SspMI	CTAG	3 cut(s)	560, 1007, 1063
StyD4I	CCNGG	1 cut(s)	984
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	5 cut(s)	129, 174, 216, 613, 1036
TaiI	ACGT	4 cut(s)	237, 625, 646, 779
TaqI	TCGA	3 cut(s)	767, 913, 1026
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	9 cut(s)	41, 260, 359, 387, 417, 627, 662, 714, 989
TatI	WGTACW	1 cut(s)	535
TfiI	GAWTC	2 cut(s)	514, 752
Tru1I	TTAA	5 cut(s)	432, 510, 570, 839, 881
Tru9I	TTAA	5 cut(s)	432, 510, 570, 839, 881
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	2 cut(s)	412, 926
TseI	GCWGC	5 cut(s)	186, 272, 374, 469, 472
Tsp45I	GTSAC	2 cut(s)	412, 926
TspDTI	ATGAA	5 cut(s)	95, 348, 352, 840, 982
TspRI	CASTG	1 cut(s)	412
Tth111I	GACNNNGTC	1 cut(s)	70
Vha464I	CTTAAG	1 cut(s)	431
VneI	GTGCAC	1 cut(s)	709
VspI	ATTAAT	1 cut(s)	839
XapI	RAATTY	3 cut(s)	359, 387, 989
XbaI	TCTAGA	1 cut(s)	1006
XceI	RCATGY	1 cut(s)	150
XcmI	CCANNNNNNNNNTGG	1 cut(s)	495
XspI	CTAG	3 cut(s)	560, 1007, 1063
ZraI	GACGTC	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.