Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

2293208 .. 2293983

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG015000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAAAAGTTACTCATTAGAATCACTTTCAACTTACTCGTTTGTACCGTTGGTGAGATATCGACTTGGCCAAGTGCAAGTAATGTTATTCCAGGACAGGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGACGTGAAGCTGTTGTATGTGAATTATCTAACCGATTGTATCAAATATGTGATAGGCGTTCAGTTTCGTGCACAATTGATCGGAAGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGACTTCGAAGCTGAAGTCAGCAGCTTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATAATGCAATGGCTCTGTCTCATTTAACTAAGGTGGGTATGCTTTTTGTCCGCTGTCGAGGAGGCATAAGTCACTTCCCTGAAGAACATGTATTGGATGATGATGTTTGGGCATCTGGTTTGGCAATCCTGGCATTCATAGAGACTCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

169

Amino Acids

18.54

Weight (kDa)

5.92

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	68
AcuI	CTGAAG	2 cut(s)	293, 456
AfaI	GTAC	2 cut(s)	46, 330
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	1 cut(s)	31
AjiI	CACGTC	1 cut(s)	143
AjnI	CCWGG	2 cut(s)	91, 483
AluBI	AGCT	5 cut(s)	149, 259, 271, 284, 505
AluI	AGCT	5 cut(s)	149, 259, 271, 284, 505
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	2 cut(s)	378, 491
Alw44I	GTGCAC	1 cut(s)	208
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	68
ApaLI	GTGCAC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AseI	ATTAAT	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	65
AsuII	TTCGAA	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	293
BciT130I	CCWGG	2 cut(s)	93, 485
BcoDI	GTCTC	2 cut(s)	378, 491
BfaI	CTAG	1 cut(s)	508
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	93, 485
BmgBI	CACGTC	1 cut(s)	143
BmrFI	CCNGG	2 cut(s)	93, 485
BmsI	GCATC	2 cut(s)	220, 476
Bpu14I	TTCGAA	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	93, 485
BseGI	GGATG	2 cut(s)	328, 457
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	429
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	153
BsmAI	GTCTC	2 cut(s)	378, 491
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	212, 297
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	1 cut(s)	406
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	247
BspT104I	TTCGAA	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	369
BssMI	GATC	1 cut(s)	217
Bst2UI	CCWGG	2 cut(s)	93, 485
Bst4CI	ACNGT	2 cut(s)	49, 112
BstBAI	YACGTR	1 cut(s)	122
BstBI	TTCGAA	1 cut(s)	266
BstDEI	CTNAG	3 cut(s)	255, 384, 501
BstF5I	GGATG	2 cut(s)	328, 457
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	378, 491
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	2 cut(s)	93, 485
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	91, 483
BstSLI	GKGCMC	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	70
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	328, 457
CaiI	CAGNNNCTG	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	45, 329
CviAII	CATG	3 cut(s)	136, 227, 443
CviJI	RGCY	8 cut(s)	70, 149, 259, 271, 284, 295, 368, 505
CviKI_1	RGCY	8 cut(s)	70, 149, 259, 271, 284, 295, 368, 505
CviQI	GTAC	2 cut(s)	45, 329
DdeI	CTNAG	3 cut(s)	255, 384, 501
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	60
Eco57I	CTGAAG	2 cut(s)	293, 456
EcoRII	CCWGG	2 cut(s)	91, 483
EcoRV	GATATC	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	3 cut(s)	139, 230, 446
FaiI	YATR	9 cut(s)	137, 157, 187, 228, 357, 395, 422, 444, 494
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	3 cut(s)	135, 226, 442
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	2 cut(s)	335, 464
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	508
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	139, 230, 446
HinfI	GANTC	3 cut(s)	21, 251, 499
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	2 cut(s)	222, 256
Hpy188III	TCNNGA	2 cut(s)	298, 320
Hpy8I	GTNNAC	1 cut(s)	210
HpyCH4III	ACNGT	2 cut(s)	49, 112
HpyCH4IV	ACGT	2 cut(s)	121, 142
HpyCH4V	TGCA	7 cut(s)	4, 77, 125, 210, 233, 239, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	3 cut(s)	255, 384, 501
HpySE526I	ACGT	2 cut(s)	121, 142
Hsp92II	CATG	3 cut(s)	139, 230, 446
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	2 cut(s)	220, 476
MaeI	CTAG	1 cut(s)	508
MaeII	ACGT	2 cut(s)	121, 142
MaeIII	GTNAC	3 cut(s)	9, 100, 425
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	449
MfeI	CAATTG	2 cut(s)	126, 213
MhlI	GDGCHC	2 cut(s)	212, 297
MlsI	TGGCCA	1 cut(s)	70
MluCI	AATT	3 cut(s)	126, 161, 213
MluNI	TGGCCA	1 cut(s)	70
MlyI	GAGTC	1 cut(s)	493
MnlI	CCTC	2 cut(s)	407, 410
Mox20I	TGGCCA	1 cut(s)	70
MscI	TGGCCA	1 cut(s)	70
MseI	TTAA	2 cut(s)	338, 380
Msp20I	TGGCCA	1 cut(s)	70
MspA1I	CMGCKG	1 cut(s)	408
MspR9I	CCNGG	2 cut(s)	93, 485
MunI	CAATTG	2 cut(s)	126, 213
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	2 cut(s)	93, 485
MwoI	GCNNNNNNNGC	1 cut(s)	485
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	3 cut(s)	139, 230, 446
NmuCI	GTSAC	1 cut(s)	425
NspI	RCATGY	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	266
PciI	ACATGT	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	21, 251
PfoI	TCCNGGA	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
Ppu21I	YACGTR	1 cut(s)	122
PscI	ACATGT	1 cut(s)	442
PshBI	ATTAAT	1 cut(s)	338
Psp6I	CCWGG	2 cut(s)	91, 483
PspGI	CCWGG	2 cut(s)	91, 483
PstNI	CAGNNNCTG	1 cut(s)	314
RsaI	GTAC	2 cut(s)	46, 330
RsaNI	GTAC	2 cut(s)	45, 329
SaqAI	TTAA	2 cut(s)	338, 380
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	93, 485
SduI	GDGCHC	2 cut(s)	212, 297
SfaNI	GCATC	2 cut(s)	220, 476
SfuI	TTCGAA	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	3 cut(s)	126, 161, 213
SsiI	CCGC	1 cut(s)	406
SspMI	CTAG	1 cut(s)	508
StyD4I	CCNGG	2 cut(s)	91, 483
TaaI	ACNGT	2 cut(s)	49, 112
TaiI	ACGT	2 cut(s)	124, 145
TaqI	TCGA	3 cut(s)	62, 266, 412
TasI	AATT	3 cut(s)	126, 161, 213
TfiI	GAWTC	2 cut(s)	21, 251
Tru1I	TTAA	2 cut(s)	338, 380
Tru9I	TTAA	2 cut(s)	338, 380
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	339, 481
VneI	GTGCAC	1 cut(s)	208
VspI	ATTAAT	1 cut(s)	338
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.