Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

15628598 .. 15629228

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30149

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGATCCTTCATACCCTAGTCAATCATTTGCAGGTTTTGTTCAGGATGAAGTACCTGTATTAATGTCTGGAGCAGGACATGGTGCAATGGCTCTGTCTCATTTAACTAAGGTGGGTATGATTTTTGTCCGCTGTCGAGGAGGCATAAGTCACTCCCCTGAAGAACATGTATTGGATGATGATGTTTGGGCGTCTGGTTTGGCAATCCTGGCATTCATTGAGACATTACTGTATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

79

Amino Acids

8.49

Weight (kDa)

4.75

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	54
AflIII	ACRYGT	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	207
Alw26I	GTCTC	2 cut(s)	102, 215
AlwI	GGATC	1 cut(s)	12
AseI	ATTAAT	1 cut(s)	62
BamHI	GGATCC	1 cut(s)	4
BciT130I	CCWGG	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	102, 215
BfaI	CTAG	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	209
BseGI	GGATG	2 cut(s)	52, 181
BseMI	GCAATG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	153
BsmAI	GTCTC	2 cut(s)	102, 215
BsmI	GAATGC	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	93
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	52, 181
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	2 cut(s)	102, 215
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtsCI	GGATG	2 cut(s)	52, 181
BveI	ACCTGC	1 cut(s)	23
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	2 cut(s)	80, 167
CviJI	RGCY	1 cut(s)	92
CviKI_1	RGCY	1 cut(s)	92
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	83, 170
FaiI	YATR	8 cut(s)	13, 81, 119, 146, 168, 234, 236, 238
FatI	CATG	2 cut(s)	79, 166
FokI	GGATG	2 cut(s)	59, 188
FspBI	CTAG	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	83, 170
Hpy188III	TCNNGA	2 cut(s)	44, 69
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	32, 86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	83, 170
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	9 cut(s)	18, 29, 54, 60, 69, 171, 180, 194, 221
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	173
MflI	RGATCY	1 cut(s)	4
MnlI	CCTC	2 cut(s)	131, 134
MseI	TTAA	2 cut(s)	62, 104
MspA1I	CMGCKG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	83, 170
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	1 cut(s)	170
PciI	ACATGT	1 cut(s)	166
PctI	GAATGC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	166
PshBI	ATTAAT	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	62, 104
Sau3AI	GATC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	3 cut(s)	37, 58, 114
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	62, 104
Tru9I	TTAA	2 cut(s)	62, 104
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	63, 205
VspI	ATTAAT	1 cut(s)	62
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.