Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Reverse (-)

79110198 .. 79116689

Gene Structure 6492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTGGGGTTATGGAATGGGCGGTGGGAGAGGATCAAGAGCATATTGGAGTGATGGTGATGGTTATCTTGAGAGGATATTCTTGAGACCAGCAGCTGTGAGGGCTGGAAATCTTATCCGCGAATGGATGGAAGATGCTGTCCTTGTTCAGTGGTGTGATAGTCTTAAGAAAAACTCCATAGAAGTTACAGTGGAGCACTTGCAGCAGCTCAGATATGACCCAAAATCAGTTTGGGGTTACGTTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTTGGAGTTGTTATGGGCATAGCTGGACAGACAAGACAAAAGGTTAAGATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGCGTCATGACCCTATGGCTGCTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGACGGTCAATGCAAAAGACAGGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGACATGAAGCTGTTGTATATGAATTATCTAACCGATTGTATCAAATATGTGATAGGGGCATTCAGTTTCGTGCACAATTGATTCATGATGCAAATGCAGTCATTTGCGATTCTCAGCTGACTTCGAAGCTGAAGTCTGCGGCTTATCTTGGGGTTAAGAGAATGACAGGTTCTGTTCACGATGAAGTACCTGTATTAATTAGTGGAGCAGGACATGAAGCAATGGCTCTGTCTCATTTAACTAAGGTGGGTATGCTTTTTGTCCGCTGTCGAGGAGGCATAAGTCACTACCCTGAAGAACATGTATTGGATGATGATGTTTGGGCGTCTGGTTTGGCAATCCTGGCAGTCATTGAGACTGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

298

Amino Acids

33.06

Weight (kDa)

5.94

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	120
AciI	CCGC	5 cut(s)	21, 118, 410, 668, 793
AclWI	GGATC	1 cut(s)	40
AcuI	CTGAAG	2 cut(s)	680, 843
AcyI	GRCGYC	1 cut(s)	854
AfaI	GTAC	2 cut(s)	270, 717
AflII	CTTAAG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	829
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	2 cut(s)	351, 870
AluBI	AGCT	7 cut(s)	95, 208, 314, 539, 646, 658, 892
AluI	AGCT	7 cut(s)	95, 208, 314, 539, 646, 658, 892
Alw21I	GWGCWC	3 cut(s)	198, 604, 894
Alw26I	GTCTC	3 cut(s)	79, 765, 878
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	40
AlwNI	CAGNNNCTG	2 cut(s)	95, 701
AoxI	GGCC	1 cut(s)	263
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	6 cut(s)	92, 202, 205, 401, 404, 407
ArsI	GACNNNNNNTTYG	2 cut(s)	647, 679
AseI	ATTAAT	1 cut(s)	725
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	68
AsuII	TTCGAA	1 cut(s)	653
BaeGI	GKGCMC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	894
Bbv12I	GWGCWC	3 cut(s)	198, 604, 894
BbvI	GCAGC	6 cut(s)	104, 214, 217, 388, 391, 394
BccI	CCATC	3 cut(s)	47, 53, 121
BciT130I	CCWGG	2 cut(s)	353, 872
BcoDI	GTCTC	3 cut(s)	79, 765, 878
BfaI	CTAG	1 cut(s)	895
BfrI	CTTAAG	1 cut(s)	164
BisI	GCNGC	7 cut(s)	93, 203, 206, 402, 405, 408, 669
BlsI	GCNGC	7 cut(s)	94, 204, 207, 403, 406, 409, 670
Bme1390I	CCNGG	2 cut(s)	353, 872
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	2 cut(s)	353, 872
BmsI	GCATC	3 cut(s)	124, 454, 607
Bpu14I	TTCGAA	1 cut(s)	653
BpuEI	CTTGAG	3 cut(s)	89, 103, 435
BsaAI	YACGTR	1 cut(s)	512
BsaBI	GATNNNNATC	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	854
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	351, 352
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	756
Bse8I	GATNNNNATC	1 cut(s)	63
BseBI	CCWGG	2 cut(s)	353, 872
BseDI	CCNNGG	2 cut(s)	351, 352
BseGI	GGATG	3 cut(s)	132, 445, 844
BseJI	GATNNNNATC	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	3 cut(s)	223, 656, 879
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	816
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	6 cut(s)	104, 214, 217, 388, 391, 394
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	265
BsiHKAI	GWGCWC	3 cut(s)	198, 604, 894
BslFI	GGGAC	1 cut(s)	543
BsmAI	GTCTC	3 cut(s)	79, 765, 878
BsmFI	GGGAC	1 cut(s)	543
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	653
Bsp1286I	GDGCHC	3 cut(s)	198, 604, 894
Bsp143I	GATC	1 cut(s)	32
BspACI	CCGC	5 cut(s)	21, 118, 410, 668, 793
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	3 cut(s)	222, 655, 880
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	2 cut(s)	388, 613
BspLI	GGNNCC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	653
BspTI	CTTAAG	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	351, 352
BssMI	GATC	1 cut(s)	32
BssNI	GRCGYC	1 cut(s)	854
Bst2UI	CCWGG	2 cut(s)	353, 872
Bst4CI	ACNGT	4 cut(s)	190, 370, 473, 502
BstACI	GRCGYC	1 cut(s)	854
BstAFI	CTTAAG	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	4 cut(s)	209, 642, 771, 888
BstF5I	GGATG	3 cut(s)	132, 445, 844
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	35
BstMAI	GTCTC	3 cut(s)	79, 765, 878
BstMBI	GATC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 202, 407, 413, 872
BstNI	CCWGG	2 cut(s)	353, 872
BstNSI	RCATGY	2 cut(s)	362, 833
BstSCI	CCNGG	2 cut(s)	351, 870
BstSLI	GKGCMC	1 cut(s)	604
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	6 cut(s)	104, 214, 217, 388, 391, 394
BsuRI	GGCC	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	132, 445, 844
BtsIMutI	CAGTG	2 cut(s)	155, 195
Cac8I	GCNNGC	1 cut(s)	360
CaiI	CAGNNNCTG	2 cut(s)	95, 701
CciI	TCATGA	2 cut(s)	388, 613
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	2 cut(s)	374, 843
Csp6I	GTAC	2 cut(s)	269, 716
CviAII	CATG	8 cut(s)	359, 382, 389, 526, 533, 614, 743, 830
CviQI	GTAC	2 cut(s)	269, 716
DdeI	CTNAG	4 cut(s)	209, 642, 771, 888
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	892
Eco24I	GRGCYC	1 cut(s)	894
Eco31I	GGTCTC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	892
Eco57I	CTGAAG	2 cut(s)	680, 843
EcoICRI	GAGCTC	1 cut(s)	892
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	351, 870
EcoT38I	GRGCYC	1 cut(s)	894
FaeI	CATG	8 cut(s)	362, 385, 392, 529, 536, 617, 746, 833
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	8 cut(s)	358, 381, 388, 525, 532, 613, 742, 829
Fnu4HI	GCNGC	7 cut(s)	93, 203, 206, 402, 405, 408, 669
FokI	GGATG	3 cut(s)	139, 432, 851
FriOI	GRGCYC	1 cut(s)	894
Fsp4HI	GCNGC	7 cut(s)	93, 203, 206, 402, 405, 408, 669
FspBI	CTAG	1 cut(s)	895
GluI	GCNGC	7 cut(s)	93, 203, 206, 402, 405, 408, 669
HaeIII	GGCC	1 cut(s)	265
HgaI	GACGC	2 cut(s)	374, 843
Hin1I	GRCGYC	1 cut(s)	854
Hin1II	CATG	8 cut(s)	362, 385, 392, 529, 536, 617, 746, 833
HinfI	GANTC	3 cut(s)	247, 610, 638
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	602, 706
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	7 cut(s)	36, 68, 82, 389, 452, 614, 707
Hpy8I	GTNNAC	2 cut(s)	602, 706
HpyCH4III	ACNGT	4 cut(s)	190, 370, 473, 502
HpyCH4IV	ACGT	2 cut(s)	240, 511
HpyCH4V	TGCA	6 cut(s)	202, 480, 515, 602, 620, 626
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 202, 407, 413, 872
HpyF3I	CTNAG	4 cut(s)	209, 642, 771, 888
HpySE526I	ACGT	2 cut(s)	240, 511
Hsp92I	GRCGYC	1 cut(s)	854
Hsp92II	CATG	8 cut(s)	362, 385, 392, 529, 536, 617, 746, 833
Kzo9I	GATC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	193, 734
Lsp1109I	GCAGC	6 cut(s)	104, 214, 217, 388, 391, 394
LweI	GCATC	3 cut(s)	124, 454, 607
MaeI	CTAG	1 cut(s)	895
MaeII	ACGT	2 cut(s)	240, 511
MaeIII	GTNAC	4 cut(s)	184, 236, 490, 812
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	2 cut(s)	143, 836
MfeI	CAATTG	2 cut(s)	516, 605
MhlI	GDGCHC	3 cut(s)	198, 604, 894
MluCI	AATT	4 cut(s)	516, 551, 605, 726
MnlI	CCTC	8 cut(s)	23, 66, 93, 300, 338, 459, 794, 797
MseI	TTAA	5 cut(s)	165, 336, 684, 725, 767
MspA1I	CMGCKG	3 cut(s)	95, 646, 795
MspCI	CTTAAG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	353, 872
MunI	CAATTG	2 cut(s)	516, 605
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	2 cut(s)	353, 872
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	5 cut(s)	101, 202, 407, 413, 872
NdeII	GATC	1 cut(s)	32
NlaIII	CATG	8 cut(s)	362, 385, 392, 529, 536, 617, 746, 833
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	812
NspI	RCATGY	2 cut(s)	362, 833
NspV	TTCGAA	1 cut(s)	653
PaeI	GCATGC	1 cut(s)	362
PagI	TCATGA	2 cut(s)	388, 613
PasI	CCCWGGG	1 cut(s)	352
PciI	ACATGT	1 cut(s)	829
PctI	GAATGC	1 cut(s)	588
PfeI	GAWTC	3 cut(s)	247, 610, 638
PkrI	GCNGC	7 cut(s)	94, 204, 207, 403, 406, 409, 670
Ppu21I	YACGTR	1 cut(s)	512
PscI	ACATGT	1 cut(s)	829
PshBI	ATTAAT	1 cut(s)	725
Psp124BI	GAGCTC	1 cut(s)	894
Psp6I	CCWGG	2 cut(s)	351, 870
PspGI	CCWGG	2 cut(s)	351, 870
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	2 cut(s)	95, 701
PvuII	CAGCTG	2 cut(s)	95, 646
RsaI	GTAC	2 cut(s)	270, 717
RsaNI	GTAC	2 cut(s)	269, 716
SacI	GAGCTC	1 cut(s)	894
SaqAI	TTAA	5 cut(s)	165, 336, 684, 725, 767
SatI	GCNGC	7 cut(s)	93, 203, 206, 402, 405, 408, 669
Sau3AI	GATC	1 cut(s)	32
Sau96I	GGNCC	1 cut(s)	263
ScrFI	CCNGG	2 cut(s)	353, 872
SduI	GDGCHC	3 cut(s)	198, 604, 894
SfaNI	GCATC	3 cut(s)	124, 454, 607
SfuI	TTCGAA	1 cut(s)	653
SmlI	CTYRAG	4 cut(s)	68, 82, 164, 450
SmoI	CTYRAG	4 cut(s)	68, 82, 164, 450
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	4 cut(s)	516, 551, 605, 726
SsiI	CCGC	5 cut(s)	21, 118, 410, 668, 793
SspMI	CTAG	1 cut(s)	895
SstI	GAGCTC	1 cut(s)	894
StyD4I	CCNGG	2 cut(s)	351, 870
TaaI	ACNGT	4 cut(s)	190, 370, 473, 502
TaiI	ACGT	2 cut(s)	243, 514
TaqI	TCGA	2 cut(s)	653, 799
TasI	AATT	4 cut(s)	516, 551, 605, 726
TatI	WGTACW	1 cut(s)	268
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	3 cut(s)	247, 610, 638
Tru1I	TTAA	5 cut(s)	165, 336, 684, 725, 767
Tru9I	TTAA	5 cut(s)	165, 336, 684, 725, 767
TscAI	CASTG	2 cut(s)	155, 195
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	6 cut(s)	92, 202, 205, 401, 404, 407
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	5 cut(s)	549, 564, 602, 726, 759
TspRI	CASTG	2 cut(s)	155, 195
Vha464I	CTTAAG	1 cut(s)	164
VneI	GTGCAC	1 cut(s)	600
VspI	ATTAAT	1 cut(s)	725
XceI	RCATGY	2 cut(s)	362, 833
XcmI	CCANNNNNNNNNTGG	2 cut(s)	228, 359
XspI	CTAG	1 cut(s)	895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.